Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Reverse (-)

61046131 .. 61058038

Gene Structure 11908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3507 bp

ATGAGTTTGAATTCGTCAAAATCGTCTGGTTCAAAATCCAAGCGAAGCTTCAATTCCAACAATTCCAGTAACAACAACACCAAGAAGACGAAGATTAGCACCAATCAGAAAACCCTAGGCGGCGTCTCTTGGGGCGCCAATTCAATCTCCTCCTCTCGCTCCTCCTTCCAAAGATCCCCCTTTCCCGATTTCGGCAGTTATATGGTAGAGAAGAACAGGAAACTTCAGAATCAGTTTGATAGTGAAGCTTCGAGTTGTTTGGGGTCCGAGAGGAGTATTTTTCGTGGGGTTTCGATTTTCGTAGATGGTTTCACAGTGCCTTCTAGTCAGGAACTGAGAGCGTACATGGTGAATTATGGTGGGAGATATGAGAATTACTTTTCAAGGCGTCGTGTTACACATATCATCTGCAGTAATCTTCCTGACAGTAAAATAAAAAATCTGAGGTCTTTCAGTGGAGGGCTCCCAGTTGTGAAGCCTAACTGGATTGTAGATTCAGTTGCTGCTAACAAACTCTTGAGTTGGGTTCCTTACCAACTTGAACAGGTTTCTTGTAACCAACCAAGGTTGTCAGCCTTCTTTGCTCCGAAGATAATCCCTAACTGTGATGATGCTTTGAGAGATACTTCTGATCAAGTGAAACCTGAAAGTGAGGATACATCTTCAGTAGGAACCAGATTAGAAGATGATAACAAATCAGTATGCAGATCCACTGAACACGAACGGGAAAGTAGTGGAGAATCTGATGATATGATGTATGAAAACACCGATGGACAATTTGGTGAGGAGTTGTATACAGGTGAAAAATACTCTGAAGTTAAACAAGAAGAAACGCCTACTTCAGATGCAGAAGATAATGTCAGCATAAAGGATGAAGTTAAATCTAGTACCCACCAGCACTCTGCTTCAGTTAGCAGTAACTGCTTGCCAAGCTCAGAAAATTTTGGGTCTAATCGAAGTCATTCAACTCTTGGGGATCCCAATTTTGTGGAAAATTATTTTAAGAGCTCAAGGCTGCACTTTATAGGAACCTGGAGAAATCGGTATCGCAAGCGTTTTCCTAGTTCATCTAAAGGGTTGGACAACACAGATTCTAACCGTTGTGCTCCTGATAGTTCTCCGAAGACTCCCATTATACATATTGACATGGACTGTTTTTTTGTGTCCGTGGTCATCAGGCAACGCCCTGAACTTAAGGATAGGCCTGTAGCTGTATGTCATTCTGATAATCCAAAGGGCACTGCTGAAATTTCATCTGCAAACTACCCTGCTCGAGATTATGGAGTGAGGGCTGGGATGTTTGTCAGGGATGCTAAGGCACTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCGTATGAGGAGGTAGCTGATCAGTTCTATGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGATGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAACTGTAAGGCAAGAGATTTTTGCGACTACTGGATGCACTGCAAGTGCTGGCATAGCTAGAAATATGCTGATGGCTCGCCTTGCAACAAGAACTGCTAAACCAGATGGTCAATGCAACATTCCTCCCGAAAGGGTGGATGATTATTTATATGAACTTCCCATCAAGACTCTTCCAGGAATAGGACACGTTCTAGAGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCGTATGATTCCTAAGGACTCTCTTCAAAAGGACTTCGGAATAAAAACTGGGGAGATGTTGTGGAATCATAGTAGAGGCATAGATAATCGGCTAGTTGGGGTGATTCAGGAAAGTAAGTCTATTGGTGCTGAAGTGAATTGGGGTGTGAGATTCAAGGATTTGAAAGATAGTCATCACTTCCTTTCAAATCTTTGCAAGGAGGTTTCTTTACGCTTGCAAGGATGCACAGTGCAGGGCCGCACTTTTACCCTTAAGATTAAGAAAAGAAGAAAAGATGCACAGGAGCCTGTGAAGTATATGGGATGTGGAGACTGTGAAAACTTGAGCCACTCTGTCACGGTTCCAGTTGCTACTGATGATGTGGAAGTGCTTCAGAGAATAACAAAGCAGCTCTTTGGGTTTTTCTCTCTAGATGTCAAGGAGATTCGAGGTATTGGTTTACAAGTTTCCAAGCTTGAAAGTGTAGATGCTTCAAAGCAAGGACTTGGAAAAAACTCTTTGAAATCATGGCTCCAATCTGCCAAAGCAAGTACAGAAGAACAATCCAATACTTATTCTGTAGATGATGGGGAGAGGGTGCATGCAGATTGTGAGGGTCAGGGAACTCGTCGAACTTCAGGCCAGCTATGTGGAAATTCACTTGGTATTCAAACTCCAGTGGACAATCATCGGTGTAGTGGTGAAACTTCTGTGAACCAGGATTCAGCACCGCCACCTTTATGTCATCTTGATTTAGGAGTTATTAAAAGTCTTCCTCCAGAACTTTTTACGGAATTAAACGGGATCTATGGTGGCAAGTTGGTTGATTTTGTTGCTAAAAATAAACGAGAATTCAGTGCAACAACATCTCATGAACGAGTAGATGGTGCAAAGAATGGGAGTGTGAGTCATCTCTTCAATGATATGCACCTGCAGGATGAAAATGTACTAGAACCTAAGCATACAGTTGTAGAAAAGCAAGCAATGCCTTCTTCTGTGGGAGGGTCCAGTGATGTGGCAGCTTCAACATCAGGTCTTGGAAATACTGATATAATGCCTGCATCTTTAAGTCAAGTAGATCCCTTGGTGTTGCAACAATTACCTCAAGAACTGAGAGTTGACTTACTTGAGCAGCTTCCTGCTCACAGGAGATATGACTTAGCTTCAAGTGCTGCCTCGGACCCTCTTGCAGAGATACGTGGAGAATCAATAGGTATGAGGGACGGAAATCATTCTGGATCACATGATCTTGCATTTAACAAGCTTTGGATTGGAAATCCTCCACGGTGGGTTGGAGAGTTCAAAGCCAGCAAATGCATGATATTAAATATTCTTGCTGAGATGTATGACAAATCAGGGTCAAGTGGAAACTTATCTGTAATTCTGCGCAGTACTATCATGGAATGTCAACATCCTCTAGATTCAAGTTCTGACTGTTGGATTCAAGCTGTATACAGCTTCTCTGAGCTTCTCAGGCAGTATGTTACATTAAAGATCGACTCAGATATTGAAGAGATCTATGTTTGTTTTCAGCTTCTTAGAAGGTTTACAATGAAGTCAAAGTTTTTCTTACAAGTATATAGTGATGTCTTTCCTTACCTTCAGATTTGTGCTTCTTGTCATCTGGCTTCTCCTACTGTACTGATTTTTAACATCCAAAGAGCAATCTCTGTGGAAGGTGGAAAGCGAGATCCTAACATCAATCCCCATTCGAGTCTTTGGTATCTTGAATATGAACTTGCAAATTTACATGCGATCACAACAGGATGCACTTTGGAGCACAACTTGTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

1168

Amino Acids

129.84

Weight (kDa)

6.26

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	91 - 166	2e-09	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	93 - 178	7.1e-07	BRCT domain
LIG3_BRCT	PF16759	93 - 169	1.2e-06	DNA ligase 3 BRCT domain
IMS	PF00817	381 - 528	5.8e-45	impB/mucB/samB family
IMS_HHH	PF11798	540 - 571	1.3e-06	IMS family HHH motif
IMS_HHH_1	PF21999	554 - 605	1.5e-19	DNA polymerase-iota, thumb domain
IMS_C	PF11799	615 - 736	3.2e-18	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2649
Acc16I	TGCGCA	1 cut(s)	3098
Acc36I	ACCTGC	1 cut(s)	2649
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	794, 3162
AciI	CCGC	3 cut(s)	120, 1969, 2441
AclWI	GGATC	8 cut(s)	168, 702, 971, 984, 2522, 2783, 2956, 3395
AcsI	RAATTY	6 cut(s)	10, 940, 1248, 2365, 2561, 3454
AcuI	CTGAAG	9 cut(s)	209, 648, 825, 834, 891, 1881, 2087, 2331, 3296
AcyI	GRCGYC	3 cut(s)	123, 135, 388
AfaI	GTAC	7 cut(s)	344, 889, 1419, 2263, 2658, 3103, 3351
AfiI	CCNNNNNNNGG	2 cut(s)	191, 1673
AflII	CTTAAG	2 cut(s)	1193, 1982
AflIII	ACRYGT	2 cut(s)	1678, 1718
AjiI	CACGTC	1 cut(s)	1719
AjnI	CCWGG	3 cut(s)	1031, 1666, 2427
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
Alw21I	GWGCWC	3 cut(s)	1010, 1108, 3492
Alw26I	GTCTC	2 cut(s)	130, 2034
AlwI	GGATC	8 cut(s)	168, 702, 971, 984, 2522, 2783, 2956, 3395
AlwNI	CAGNNNCTG	3 cut(s)	334, 503, 921
Ama87I	CYCGRG	1 cut(s)	1272
AoxI	GGCC	3 cut(s)	1202, 1966, 2350
ApeKI	GCWGC	6 cut(s)	503, 1015, 2119, 2729, 2842, 2882
ApoI	RAATTY	6 cut(s)	10, 940, 1248, 2365, 2561, 3454
ArsI	GACNNNNNNTTYG	2 cut(s)	1142, 1174
Asp700I	GAANNNNTTC	3 cut(s)	961, 2100, 2941
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	137, 3099
AspS9I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
AsuHPI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
AvaI	CYCGRG	1 cut(s)	1272
AvaII	GGWCC	3 cut(s)	264, 2715, 2890
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	1743
BaeGI	GKGCMC	1 cut(s)	1241
BamHI	GGATCC	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	465, 1010
BbsI	GAAGAC	3 cut(s)	92, 1130, 2474
Bbv12I	GWGCWC	3 cut(s)	1010, 1108, 3492
BbvI	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BccI	CCATC	7 cut(s)	299, 764, 1558, 1592, 1661, 2291, 2588
BciT130I	CCWGG	3 cut(s)	1033, 1668, 2429
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	2 cut(s)	631, 1378
BcoDI	GTCTC	2 cut(s)	130, 2034
BfmI	CTRYAG	5 cut(s)	409, 1206, 1408, 2289, 2642
BfoI	RGCGCY	1 cut(s)	138
BfrI	CTTAAG	2 cut(s)	1193, 1982
BfuAI	ACCTGC	1 cut(s)	2649
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	3225
BisI	GCNGC	8 cut(s)	121, 504, 1016, 1969, 2120, 2730, 2843, 2883
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	8 cut(s)	122, 505, 1017, 1970, 2121, 2731, 2844, 2884
BmcAI	AGTACT	1 cut(s)	3103
Bme1390I	CCNGG	3 cut(s)	1033, 1668, 2429
Bme18I	GGWCC	3 cut(s)	264, 2715, 2890
BmeT110I	CYCGRG	1 cut(s)	1272
BmgBI	CACGTC	1 cut(s)	1719
BmgT120I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
BmrFI	CCNGG	3 cut(s)	1033, 1668, 2429
BmrI	ACTGGG	2 cut(s)	461, 1788
BmsI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3467
BmuI	ACTGGG	2 cut(s)	461, 1788
BpiI	GAAGAC	3 cut(s)	92, 1130, 2474
BpmI	CTGGAG	3 cut(s)	1054, 2370, 2472
Bpu10I	CCTNAGC	2 cut(s)	1314, 2667
BpuEI	CTTGAG	5 cut(s)	538, 994, 2074, 2799, 2858
BsaAI	YACGTR	1 cut(s)	2909
BsaBI	GATNNNNATC	1 cut(s)	1902
BsaHI	GRCGYC	3 cut(s)	123, 135, 388
BsaJI	CCNNGG	6 cut(s)	115, 563, 1167, 2793, 2886, 2993
BsaXI	ACNNNNNCTCC	4 cut(s)	1775, 1805, 2602, 2632
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 1673
Bse1I	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2075, 2387, 2718
Bse21I	CCTNAGG	1 cut(s)	1743
Bse3DI	GCAATG	1 cut(s)	2700
Bse8I	GATNNNNATC	1 cut(s)	1902
BseBI	CCWGG	3 cut(s)	1033, 1668, 2429
BseDI	CCNNGG	6 cut(s)	115, 563, 1167, 2793, 2886, 2993
BseJI	GATNNNNATC	1 cut(s)	1902
BseLI	CCNNNNNNNGG	2 cut(s)	191, 1673
BseMI	GCAATG	1 cut(s)	2700
BseMII	CTCAG	8 cut(s)	326, 434, 948, 2813, 3039, 3165, 3196, 3225
BseNI	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2075, 2387, 2718
BseRI	GAGGAG	7 cut(s)	139, 142, 151, 286, 800, 1382, 1703
BseSI	GKGCMC	1 cut(s)	1241
BseXI	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	2 cut(s)	1001, 1982
BshFI	GGCC	3 cut(s)	1204, 1968, 2352
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	3 cut(s)	1010, 1108, 3492
BsiHKCI	CYCGRG	1 cut(s)	1272
BslFI	GGGAC	1 cut(s)	2945
BslI	CCNNNNNNNGG	2 cut(s)	191, 1673
BsmAI	GTCTC	2 cut(s)	130, 2034
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	2945
BsnI	GGCC	3 cut(s)	1204, 1968, 2352
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	5 cut(s)	465, 1010, 1108, 1241, 3492
BspACI	CCGC	3 cut(s)	120, 1969, 2441
BspANI	GGCC	3 cut(s)	1204, 1968, 2352
BspCNI	CTCAG	8 cut(s)	327, 435, 947, 2814, 3040, 3166, 3195, 3224
BspHI	TCATGA	1 cut(s)	2581
BspMAI	CTGCAG	3 cut(s)	413, 1412, 2646
BspMI	ACCTGC	1 cut(s)	2649
BspPI	GGATC	8 cut(s)	168, 702, 971, 984, 2522, 2783, 2956, 3395
BspT107I	GGYRCC	1 cut(s)	134
BspTI	CTTAAG	2 cut(s)	1193, 1982
BsrDI	GCAATG	1 cut(s)	2700
BsrI	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2075, 2387, 2718
BssECI	CCNNGG	6 cut(s)	115, 563, 1167, 2793, 2886, 2993
BssNAI	GTATAC	2 cut(s)	795, 3163
BssNI	GRCGYC	3 cut(s)	123, 135, 388
BssT1I	CCWWGG	3 cut(s)	115, 563, 2793
Bst1107I	GTATAC	2 cut(s)	795, 3163
Bst2UI	CCWGG	3 cut(s)	1033, 1668, 2429
Bst6I	CTCTTC	4 cut(s)	1668, 1758, 2630, 3216
BstACI	GRCGYC	3 cut(s)	123, 135, 388
BstAFI	CTTAAG	2 cut(s)	1193, 1982
BstAPI	GCANNNNNTGC	2 cut(s)	921, 2695
BstBAI	YACGTR	1 cut(s)	2909
BstDSI	CCRYGG	2 cut(s)	1167, 2993
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 3099
BstMAI	GTCTC	2 cut(s)	130, 2034
BstMWI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2695, 2879, 3184
BstNI	CCWGG	3 cut(s)	1033, 1668, 2429
BstNSI	RCATGY	2 cut(s)	2315, 3464
BstSCI	CCNGG	3 cut(s)	1031, 1666, 2427
BstSFI	CTRYAG	5 cut(s)	409, 1206, 1408, 2289, 2642
BstSLI	GKGCMC	1 cut(s)	1241
BstV1I	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BstV2I	GAAGAC	3 cut(s)	92, 1130, 2474
BstX2I	RGATCY	7 cut(s)	173, 707, 976, 2514, 2788, 3225, 3400
BstXI	CCANNNNNNTGG	3 cut(s)	988, 2360, 2725
BstYI	RGATCY	7 cut(s)	173, 707, 976, 2514, 2788, 3225, 3400
BstZ17I	GTATAC	2 cut(s)	795, 3163
Bsu36I	CCTNAGG	1 cut(s)	1743
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	1204, 1968, 2352
BtgI	CCRYGG	2 cut(s)	1167, 2993
BtrI	CACGTC	1 cut(s)	1719
BtsI	GCAGTG	3 cut(s)	1239, 1405, 1530
BveI	ACCTGC	1 cut(s)	2649
CaiI	CAGNNNCTG	3 cut(s)	334, 503, 921
CciI	TCATGA	1 cut(s)	2581
CfoI	GCGC	2 cut(s)	137, 3099
Cfr13I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
CseI	GACGC	2 cut(s)	112, 377
Csp6I	GTAC	7 cut(s)	343, 888, 1418, 2262, 2657, 3102, 3350
CspCI	CAANNNNNGTGG	2 cut(s)	3363, 3398
CviAII	CATG	9 cut(s)	346, 1147, 2238, 2312, 2582, 2954, 3028, 3109, 3461
CviQI	GTAC	7 cut(s)	343, 888, 1418, 2262, 2657, 3102, 3350
DinI	GGCGCC	1 cut(s)	136
Eam1104I	CTCTTC	4 cut(s)	1668, 1758, 2630, 3216
EarI	CTCTTC	4 cut(s)	1668, 1758, 2630, 3216
Ecl136II	GAGCTC	1 cut(s)	1008
Eco130I	CCWWGG	3 cut(s)	115, 563, 2793
Eco147I	AGGCCT	1 cut(s)	1204
Eco24I	GRGCYC	2 cut(s)	465, 1010
Eco47I	GGWCC	3 cut(s)	264, 2715, 2890
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	9 cut(s)	209, 648, 825, 834, 891, 1881, 2087, 2331, 3296
Eco81I	CCTNAGG	1 cut(s)	1743
Eco88I	CYCGRG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	1008
EcoRI	GAATTC	2 cut(s)	10, 2561
EcoRII	CCWGG	3 cut(s)	1031, 1666, 2427
EcoT14I	CCWWGG	3 cut(s)	115, 563, 2793
EcoT22I	ATGCAT	1 cut(s)	3029
EcoT38I	GRGCYC	2 cut(s)	465, 1010
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	3 cut(s)	115, 563, 2793
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	9 cut(s)	349, 1150, 2241, 2315, 2585, 2957, 3031, 3112, 3464
FalI	AAGNNNNNCTT	6 cut(s)	32, 64, 2108, 2140, 3263, 3295
FaqI	GGGAC	1 cut(s)	2945
FatI	CATG	9 cut(s)	345, 1146, 2237, 2311, 2581, 2953, 3027, 3108, 3460
FbaI	TGATCA	2 cut(s)	631, 1378
FblI	GTMKAC	2 cut(s)	794, 3162
Fnu4HI	GCNGC	8 cut(s)	121, 504, 1016, 1969, 2120, 2730, 2843, 2883
FriOI	GRGCYC	2 cut(s)	465, 1010
Fsp4HI	GCNGC	8 cut(s)	121, 504, 1016, 1969, 2120, 2730, 2843, 2883
FspI	TGCGCA	1 cut(s)	3098
GlaI	GCGC	2 cut(s)	136, 3098
GluI	GCNGC	8 cut(s)	121, 504, 1016, 1969, 2120, 2730, 2843, 2883
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	3 cut(s)	1054, 2370, 2472
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	1204, 1968, 2352
HgaI	GACGC	2 cut(s)	112, 377
HhaI	GCGC	2 cut(s)	137, 3099
Hin1I	GRCGYC	3 cut(s)	123, 135, 388
Hin1II	CATG	9 cut(s)	349, 1150, 2241, 2315, 2585, 2957, 3031, 3112, 3464
Hin6I	GCGC	2 cut(s)	135, 3097
HinP1I	GCGC	2 cut(s)	135, 3097
HincII	GTYRAC	2 cut(s)	2830, 3119
HindII	GTYRAC	2 cut(s)	2830, 3119
HindIII	AAGCTT	4 cut(s)	46, 246, 2183, 2972
HphI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
Hpy99I	CGWCG	2 cut(s)	393, 2343
HpyAV	CCTTC	8 cut(s)	175, 330, 586, 1460, 2709, 3246, 3320, 3380
HpyCH4IV	ACGT	3 cut(s)	1680, 1718, 2908
HpyF10VI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2695, 2879, 3184
HpySE526I	ACGT	3 cut(s)	1680, 1718, 2908
Hsp92I	GRCGYC	3 cut(s)	123, 135, 388
Hsp92II	CATG	9 cut(s)	349, 1150, 2241, 2315, 2585, 2957, 3031, 3112, 3464
HspAI	GCGC	2 cut(s)	135, 3097
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	631, 1378
LmnI	GCTCC	7 cut(s)	164, 468, 589, 1111, 2014, 2247, 3487
Lsp1109I	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
LweI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3467
MaeII	ACGT	3 cut(s)	1680, 1718, 2908
MaeIII	GTNAC	7 cut(s)	68, 394, 554, 917, 1453, 2065, 3193
MflI	RGATCY	7 cut(s)	173, 707, 976, 2514, 2788, 3225, 3400
MhlI	GDGCHC	5 cut(s)	465, 1010, 1108, 1241, 3492
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	6 cut(s)	1120, 1654, 1742, 2626, 3203, 3433
MmeI	TCCRAC	4 cut(s)	81, 1059, 2983, 3128
Mph1103I	ATGCAT	1 cut(s)	3029
MroXI	GAANNNNTTC	3 cut(s)	961, 2100, 2941
MslI	CAYNNNNRTG	1 cut(s)	2449
MspCI	CTTAAG	2 cut(s)	1193, 1982
MspR9I	CCNGG	3 cut(s)	1033, 1668, 2429
MvaI	CCWGG	3 cut(s)	1033, 1668, 2429
MwoI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2695, 2879, 3184
NarI	GGCGCC	1 cut(s)	135
NlaIII	CATG	9 cut(s)	349, 1150, 2241, 2315, 2585, 2957, 3031, 3112, 3464
NmuCI	GTSAC	2 cut(s)	1453, 2065
NsbI	TGCGCA	1 cut(s)	3098
NsiI	ATGCAT	1 cut(s)	3029
NspI	RCATGY	2 cut(s)	2315, 3464
PaeI	GCATGC	1 cut(s)	2315
PaeR7I	CTCGAG	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	2581
PaqCI	CACCTGC	1 cut(s)	2649
PceI	AGGCCT	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	3 cut(s)	961, 2100, 2941
PfoI	TCCNGGA	1 cut(s)	1666
PkrI	GCNGC	8 cut(s)	122, 505, 1017, 1970, 2121, 2731, 2844, 2884
PleI	GAGTC	6 cut(s)	1120, 1654, 1742, 2625, 3203, 3432
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	6 cut(s)	1120, 1654, 1742, 2625, 3203, 3432
Ppu21I	YACGTR	1 cut(s)	2909
Psp124BI	GAGCTC	1 cut(s)	1010
Psp6I	CCWGG	3 cut(s)	1031, 1666, 2427
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	3 cut(s)	1031, 1666, 2427
PspPI	GGNCC	4 cut(s)	264, 1966, 2715, 2890
PstI	CTGCAG	3 cut(s)	413, 1412, 2646
PstNI	CAGNNNCTG	3 cut(s)	334, 503, 921
PsuI	RGATCY	7 cut(s)	173, 707, 976, 2514, 2788, 3225, 3400
RsaI	GTAC	7 cut(s)	344, 889, 1419, 2263, 2658, 3103, 3351
RsaNI	GTAC	7 cut(s)	343, 888, 1418, 2262, 2657, 3102, 3350
RseI	CAYNNNNRTG	1 cut(s)	2449
SacI	GAGCTC	1 cut(s)	1010
SatI	GCNGC	8 cut(s)	121, 504, 1016, 1969, 2120, 2730, 2843, 2883
Sau96I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
SbfI	CCTGCAGG	1 cut(s)	2646
ScaI	AGTACT	1 cut(s)	3103
SchI	GAGTC	6 cut(s)	1120, 1654, 1742, 2626, 3203, 3433
ScrFI	CCNGG	3 cut(s)	1033, 1668, 2429
SdaI	CCTGCAGG	1 cut(s)	2646
SduI	GDGCHC	5 cut(s)	465, 1010, 1108, 1241, 3492
SfaNI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3467
SfcI	CTRYAG	5 cut(s)	409, 1206, 1408, 2289, 2642
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	1272
SinI	GGWCC	3 cut(s)	264, 2715, 2890
SlaI	CTCGAG	1 cut(s)	1272
SmiMI	CAYNNNNRTG	1 cut(s)	2449
SmlI	CTYRAG	8 cut(s)	517, 1009, 1193, 1272, 1982, 2053, 2814, 2837
SmoI	CTYRAG	8 cut(s)	517, 1009, 1193, 1272, 1982, 2053, 2814, 2837
SphI	GCATGC	1 cut(s)	2315
Sse8387I	CCTGCAGG	1 cut(s)	2646
SseBI	AGGCCT	1 cut(s)	1204
SsiI	CCGC	3 cut(s)	120, 1969, 2441
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	1 cut(s)	3040
SstI	GAGCTC	1 cut(s)	1010
StuI	AGGCCT	1 cut(s)	1204
StyD4I	CCNGG	3 cut(s)	1031, 1666, 2427
StyI	CCWWGG	3 cut(s)	115, 563, 2793
TaiI	ACGT	3 cut(s)	1683, 1721, 2911
TaqI	TCGA	8 cut(s)	251, 293, 955, 1273, 2158, 2341, 3207, 3422
TatI	WGTACW	5 cut(s)	1417, 2261, 2656, 3101, 3349
TauI	GCSGC	2 cut(s)	123, 1971
TseFI	GTSAC	2 cut(s)	1453, 2065
TseI	GCWGC	6 cut(s)	503, 1015, 2119, 2729, 2842, 2882
Tsp45I	GTSAC	2 cut(s)	1453, 2065
TspGWI	ACGGA	3 cut(s)	1156, 2516, 2949
Vha464I	CTTAAG	2 cut(s)	1193, 1982
VpaK11BI	GGWCC	3 cut(s)	264, 2715, 2890
XapI	RAATTY	6 cut(s)	10, 940, 1248, 2365, 2561, 3454
XbaI	TCTAGA	3 cut(s)	1684, 2140, 3127
XceI	RCATGY	2 cut(s)	2315, 3464
XhoI	CTCGAG	1 cut(s)	1272
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	794, 3162
XmnI	GAANNNNTTC	3 cut(s)	961, 2100, 2941
ZrmI	AGTACT	1 cut(s)	3103
Zsp2I	ATGCAT	1 cut(s)	3029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.