Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Forward (+)

10161936 .. 10172969

Gene Structure 11034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3357 bp

ATGAGTTTGAATTCGTCAAAATCGTCTGGTTCAAAATCCAAGCGAAGCTTCAATTCCAACAATTCCACTAACAACAACAAGAAGAAGACGAAGATTAGCACCAATCAGAAAACCCTAGGCGGCGTCTCTTGGGGAGCCAATTCTCTCTCCTCCTCTCGCTCCTCCTTCCAAAGATCCCCCTTTCCCGATTTCGGCAGTTATATGGTAGAGAAGAACAGGAAACTGCAGAATCAGTTTGATAGTGAAGCTTCGAGTTGTTTGGGGTCCGAGAGGAGTATTTTTCGTGGGGTTTCGATTTTCGTAGATGGTTTCACAGTGCCTTCTAGTCAGGAACTGAGAGCGTACATGGTGAATTATGGTGGTAGATATGAGAATTACTTTTCAAGGCGTCGTGTTACACATATCATCTGCAGTAATCTTCCTGACAGTAAAATAAAAAATCTGAGGTCTTTCAGTGGAGGGCTCCCAGTTGTGAAGCCTAACTGGATTGTAGATTCAGTTGCTGCTAACAAACTCTTGAGTTGGGTTCCTTACCAACTTGAGCAGGTTTCTTGTAACCAACCAAGGTTGTCAGCCTTCTTTGCTCCGAAGATAATCCCCAACTGTGATGATGCTTTGAGAGATACATCTGATCAAGTGAAACCTGAAAGTGAGGATACATCTTTGGTAGGAACCAGATTAGAAGATGATAACAAGTCAGTATGCAGATCCACTGAACATGAACGGGAAAGTAGCGGAGAATCTGATGATATGATATATGAAAACACCGATGGACAATTTGGTGAGGAGTTGTATACAGGTGAAAAATATTCTGAAGTTAAACAAGAAGAAACGCCTACTTCAGATGCAGAAGATAATGTCAGCATAAAGGATGAATTTAAATCTAGTACCCACCAGCACTCTGCTTCAGTTAGCAGTAACTGCTTGCCAAGCTCAGAAAATTTTGGGTCTAATCGAAGTCATTCAACTCTTGGGGATCCCAATTTTGTGGAAAATTATTTTAAGAGCTCAAGGCTGCACTTTATAGGAACCTGGAGAAATCGGTATCGCAAGCGTTTTCCTAGTTCGTCTAAAGGGTTGGACAACACAGATTCTAACCGTTGTGCTCCTGATAGTTCTCTGAAGACTCCCATTATACATATTGACATGGACTGTTTTTTTGTGTCCGTGGTCATCAGGCAACGCCCTGAACTTAAGGATAGGCCTGTAGCTGTATGTCATTCTGATAATCCAAAGGGCACTGCTGAAATTTCATCTGCAAACTACCCTGCTCGAGATTATGGAGTGAGGGCTGGGATGTTTGTCAGAGATGCTAAGGCACTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCGTATGAGGAGGTAGCTGATCAGTTCTATGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGATGAAGCATTTTTAGATTTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAACTGTAAGACAAGAGATTTTTGAGACTACTGGATGCACTGCAAGTGCTGGCATAGCTAGAAATATGCTGATGGCTCGTCTTGCAACAAGAACTGCTAAACCAGATGGTCAATGCAACATTCCTCCCGAAAGGGTGGATGATTATTTATATGAACTTCCCATCAAGACGCTTCCAGGAATAGGACACGTTCTAGGGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCGGATGATTCCTAAGGACTCTCTTCAAAAGGACTTCGGAATAAAAACTGGGGAGATGTTGTGGAATCATAGTAGAGGCATAGATAATCGGCTAGTTGGGGTGATTCAGGAAAGTAAGTCTATTGGTGCTGAAGTGAATTGGGGTGTGAGATTCAAGGATTTGAAAGATAGTCATCACTTCCTTTCAAATCTTTGCAAGGAGGTTTCTTTACGCTTGCAAGGATGCACAGTGCAGGGTCGTACTTTTACCCTTAAGATTAAGAAAAGAAGAAAAGATGCACAGGAGCCTGTGAAGTATATGGGATGTGGAGACTGTGAAAACTTGAGCCACTCTGTCACGGTTCCAGTTGCTACTGATGATGTGGAAGTGCTTCAGAGAATAACAAAGCAGCTCTTTGGGTTTTTCTCTCTAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAAGCTTGAGAGTGTAGATGCTTCAAAGCAAGGACTTGGAAAAAACTCTTTGAAATCGTGGCTCCAATCTGCCAAAGCAAGTACAGAAGAACAATCCAATACTTATTCTGTAGATGATGGGAAGAGGGCGCATGCAGATTGTGAGGGTCGGGGAACTCATCGAACTTCAGGCCAGCTATGCGGAAATTCACTTGGTATTCCAACTCCAGTGGACAATCATCGGTGTAGTGGTGAAACTTCTGTGAACCAGGTTTCAGCACCACCACCTTTATGTCATCTTGATTTAGGAGTTATTGAAAGTCTTCCTCCAGAACTTTTTATGGAATTAAACGGGATCTATGGTGGCAAGTTGGTTGATTTTGTTGCTAAAAATAAACGAGAATTCAGTGCAACAACATCTCATGAACGAGTAGATGGTGCAAAGAACGGGAGTGAGAGTCATCTCTTCAATGATATGCACCTGCAGGATGAAAATGTATTAGAACCCAAGCATACAGTTGTAGAAAAACAAGCAATGCCTTCTTCTGTGGGAGGGTCCAGTGATGTGGCAGCTTCAACATCAGGTCTTGGAAATACTGATATAATGCCTGCATCTTTAAGTCAAGTAGATCCCTTGGTGTTGCAACAATTACCTCAAGAACTGAGAGTTGACTTACTTGAGCAGCTTCCTGCACACAGGAGATATGACTTAGCTTCAAGTGCTGCCTCGGACCCTCTTGCAGAGATACCTGGAGAATCAATAGGTATGAGGGACGGAAATCATTCTGGATCACATGATCTTGCATTTAACAAGCTTTGGATTGGAAATCCTCCACAGTGGGTTGAAGAGTTCAAAGCCAGCAAATGCATGATATTAAATATTCTTGCTGAGATGTATGACAAATCAGGGTCAAGTGGAAACTTATCTGTAATTCTGCGCAGTACTATCATGGAATGTCAACATCCTCTAGATTCAAGTTCTGACTGTTGGATTCAAGCTGTATACAGCTTCTCTGAGCTTCTCAGGCAGTATGTTACATTAAAGATCGACTCAGATATTGAAGAGATCTATGTTTGTTTTCGGCTTCTTAGAAGGTTTACAACGAAGTCAAAGTTTTTCTTACAAGTATATAGTGATGTCTTTCCTTACCTTCAGGCATCTTTCACTGATAGCTATGGAGGAAACTTGCACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

1118

Amino Acids

124.46

Weight (kDa)

6.22

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	91 - 166	1.9e-09	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	93 - 178	6.7e-07	BRCT domain
LIG3_BRCT	PF16759	93 - 169	1.1e-06	DNA ligase 3 BRCT domain
IMS	PF00817	381 - 528	5.2e-45	impB/mucB/samB family
IMS_HHH	PF11798	540 - 571	1.5e-06	IMS family HHH motif
POLH-Rev1_HhH	PF21704	550 - 604	1e-05	DNApol eta/Rev1, HhH motif
IMS_HHH_1	PF21999	554 - 605	4.2e-19	DNA polymerase-iota, thumb domain
IMS_C	PF11799	615 - 736	3e-18	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2649
Acc16I	TGCGCA	1 cut(s)	3098
Acc36I	ACCTGC	2 cut(s)	535, 2649
AccI	GTMKAC	2 cut(s)	794, 3162
AciI	CCGC	4 cut(s)	120, 735, 1732, 2361
AclWI	GGATC	7 cut(s)	168, 702, 971, 984, 2522, 2783, 2956
AcsI	RAATTY	6 cut(s)	10, 875, 940, 1248, 2365, 2561
AcuI	CTGAAG	8 cut(s)	825, 834, 891, 1142, 1881, 2087, 2331, 3296
AcyI	GRCGYC	2 cut(s)	123, 388
AfaI	GTAC	6 cut(s)	344, 889, 1419, 1972, 2263, 3103
AfiI	CCNNNNNNNGG	2 cut(s)	191, 1673
AflII	CTTAAG	2 cut(s)	1193, 1982
AflIII	ACRYGT	2 cut(s)	1678, 1718
AjiI	CACGTC	1 cut(s)	1719
AjnI	CCWGG	4 cut(s)	1031, 1666, 2427, 2908
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
Alw21I	GWGCWC	2 cut(s)	1010, 1108
Alw26I	GTCTC	3 cut(s)	130, 1511, 2034
AlwI	GGATC	7 cut(s)	168, 702, 971, 984, 2522, 2783, 2956
AlwNI	CAGNNNCTG	3 cut(s)	334, 503, 921
Ama87I	CYCGRG	1 cut(s)	1272
AoxI	GGCC	2 cut(s)	1202, 2350
ApeKI	GCWGC	6 cut(s)	503, 1015, 2119, 2729, 2842, 2882
ApoI	RAATTY	6 cut(s)	10, 875, 940, 1248, 2365, 2561
ArsI	GACNNNNNNTTYG	2 cut(s)	1142, 1174
Asp700I	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	2311, 3099
AspS9I	GGNCC	3 cut(s)	264, 2715, 2890
AsuHPI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
AvaI	CYCGRG	1 cut(s)	1272
AvaII	GGWCC	3 cut(s)	264, 2715, 2890
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	1743
BaeGI	GKGCMC	1 cut(s)	1241
BamHI	GGATCC	1 cut(s)	976
BanII	GRGCYC	2 cut(s)	465, 1010
BbsI	GAAGAC	3 cut(s)	92, 1130, 2474
Bbv12I	GWGCWC	2 cut(s)	1010, 1108
BbvI	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BccI	CCATC	7 cut(s)	299, 764, 1558, 1592, 1661, 2291, 2588
BciT130I	CCWGG	4 cut(s)	1033, 1668, 2429, 2910
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	2 cut(s)	631, 1378
BcoDI	GTCTC	3 cut(s)	130, 1511, 2034
BfaI	CTAG	9 cut(s)	116, 324, 885, 1062, 1551, 1685, 1823, 2141, 3128
BfmI	CTRYAG	6 cut(s)	224, 409, 1206, 1408, 2289, 2642
BfrI	CTTAAG	2 cut(s)	1193, 1982
BfuAI	ACCTGC	2 cut(s)	535, 2649
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	3225
BisI	GCNGC	7 cut(s)	121, 504, 1016, 2120, 2730, 2843, 2883
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	7 cut(s)	122, 505, 1017, 2121, 2731, 2844, 2884
BmcAI	AGTACT	1 cut(s)	3103
Bme1390I	CCNGG	4 cut(s)	1033, 1668, 2429, 2910
Bme18I	GGWCC	3 cut(s)	264, 2715, 2890
BmeT110I	CYCGRG	1 cut(s)	1272
BmgBI	CACGTC	1 cut(s)	1719
BmgT120I	GGNCC	3 cut(s)	264, 2715, 2890
BmrFI	CCNGG	4 cut(s)	1033, 1668, 2429, 2910
BmrI	ACTGGG	2 cut(s)	461, 1788
BmsI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3326
BmuI	ACTGGG	2 cut(s)	461, 1788
BpiI	GAAGAC	3 cut(s)	92, 1130, 2474
BpmI	CTGGAG	4 cut(s)	1054, 2370, 2472, 2931
Bpu10I	CCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	7 cut(s)	538, 560, 994, 2074, 2207, 2799, 2858
BsaBI	GATNNNNATC	1 cut(s)	1902
BsaHI	GRCGYC	2 cut(s)	123, 388
BsaJI	CCNNGG	5 cut(s)	115, 563, 1167, 2793, 2886
BsaXI	ACNNNNNCTCC	4 cut(s)	1775, 1805, 2602, 2632
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 1673
Bse1I	ACTGG	7 cut(s)	467, 488, 1528, 1783, 2075, 2387, 2718
Bse21I	CCTNAGG	1 cut(s)	1743
Bse3DI	GCAATG	1 cut(s)	2700
Bse8I	GATNNNNATC	1 cut(s)	1902
BseBI	CCWGG	4 cut(s)	1033, 1668, 2429, 2910
BseDI	CCNNGG	5 cut(s)	115, 563, 1167, 2793, 2886
BseGI	GGATG	9 cut(s)	877, 1302, 1532, 1636, 1740, 1958, 2039, 2653, 3121
BseJI	GATNNNNATC	1 cut(s)	1902
BseLI	CCNNNNNNNGG	2 cut(s)	191, 1673
BseMI	GCAATG	1 cut(s)	2700
BseMII	CTCAG	8 cut(s)	326, 434, 948, 2813, 3039, 3165, 3196, 3225
BseNI	ACTGG	7 cut(s)	467, 488, 1528, 1783, 2075, 2387, 2718
BseRI	GAGGAG	6 cut(s)	139, 142, 151, 286, 800, 1382
BseSI	GKGCMC	1 cut(s)	1241
BseXI	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	3 cut(s)	1001, 1982, 2835
BshFI	GGCC	2 cut(s)	1204, 2352
BsiHKAI	GWGCWC	2 cut(s)	1010, 1108
BsiHKCI	CYCGRG	1 cut(s)	1272
BslFI	GGGAC	1 cut(s)	2945
BslI	CCNNNNNNNGG	2 cut(s)	191, 1673
BsmAI	GTCTC	3 cut(s)	130, 1511, 2034
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	2945
BsnI	GGCC	2 cut(s)	1204, 2352
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
BspACI	CCGC	4 cut(s)	120, 735, 1732, 2361
BspANI	GGCC	2 cut(s)	1204, 2352
BspCNI	CTCAG	8 cut(s)	327, 435, 947, 2814, 3040, 3166, 3195, 3224
BspHI	TCATGA	1 cut(s)	2581
BspMAI	CTGCAG	4 cut(s)	228, 413, 1412, 2646
BspMI	ACCTGC	2 cut(s)	535, 2649
BspPI	GGATC	7 cut(s)	168, 702, 971, 984, 2522, 2783, 2956
BspTI	CTTAAG	2 cut(s)	1193, 1982
BsrDI	GCAATG	1 cut(s)	2700
BsrI	ACTGG	7 cut(s)	467, 488, 1528, 1783, 2075, 2387, 2718
BssECI	CCNNGG	5 cut(s)	115, 563, 1167, 2793, 2886
BssNAI	GTATAC	2 cut(s)	795, 3163
BssNI	GRCGYC	2 cut(s)	123, 388
BssT1I	CCWWGG	3 cut(s)	115, 563, 2793
Bst1107I	GTATAC	2 cut(s)	795, 3163
Bst2UI	CCWGG	4 cut(s)	1033, 1668, 2429, 2910
Bst6I	CTCTTC	5 cut(s)	1758, 2297, 2630, 3000, 3216
BstACI	GRCGYC	2 cut(s)	123, 388
BstAFI	CTTAAG	2 cut(s)	1193, 1982
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstC8I	GCNNGC	8 cut(s)	926, 1052, 1543, 1946, 2313, 2354, 2769, 3019
BstDSI	CCRYGG	1 cut(s)	1167
BstF5I	GGATG	9 cut(s)	877, 1302, 1532, 1636, 1740, 1958, 2039, 2653, 3121
BstHHI	GCGC	2 cut(s)	2311, 3099
BstMAI	GTCTC	3 cut(s)	130, 1511, 2034
BstMWI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2358, 2879, 3184
BstNI	CCWGG	4 cut(s)	1033, 1668, 2429, 2910
BstNSI	RCATGY	1 cut(s)	2315
BstSCI	CCNGG	4 cut(s)	1031, 1666, 2427, 2908
BstSFI	CTRYAG	6 cut(s)	224, 409, 1206, 1408, 2289, 2642
BstSLI	GKGCMC	1 cut(s)	1241
BstV1I	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
BstV2I	GAAGAC	3 cut(s)	92, 1130, 2474
BstX2I	RGATCY	6 cut(s)	173, 707, 976, 2514, 2788, 3225
BstXI	CCANNNNNNTGG	2 cut(s)	988, 2725
BstYI	RGATCY	6 cut(s)	173, 707, 976, 2514, 2788, 3225
BstZ17I	GTATAC	2 cut(s)	795, 3163
Bsu36I	CCTNAGG	1 cut(s)	1743
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	1204, 2352
BtgI	CCRYGG	1 cut(s)	1167
BtrI	CACGTC	1 cut(s)	1719
BtsCI	GGATG	9 cut(s)	877, 1302, 1532, 1636, 1740, 1958, 2039, 2653, 3121
BtsI	GCAGTG	3 cut(s)	1239, 1405, 1530
BveI	ACCTGC	2 cut(s)	535, 2649
Cac8I	GCNNGC	8 cut(s)	926, 1052, 1543, 1946, 2313, 2354, 2769, 3019
CaiI	CAGNNNCTG	3 cut(s)	334, 503, 921
CciI	TCATGA	1 cut(s)	2581
CfoI	GCGC	2 cut(s)	2311, 3099
Cfr13I	GGNCC	3 cut(s)	264, 2715, 2890
CseI	GACGC	3 cut(s)	112, 377, 1669
CsiI	ACCWGGT	1 cut(s)	2427
Csp6I	GTAC	6 cut(s)	343, 888, 1418, 1971, 2262, 3102
CspCI	CAANNNNNGTGG	2 cut(s)	2370, 2405
CviAII	CATG	8 cut(s)	346, 719, 1147, 2312, 2582, 2954, 3028, 3109
CviQI	GTAC	6 cut(s)	343, 888, 1418, 1971, 2262, 3102
DraI	TTTAAA	1 cut(s)	880
Eam1104I	CTCTTC	5 cut(s)	1758, 2297, 2630, 3000, 3216
EarI	CTCTTC	5 cut(s)	1758, 2297, 2630, 3000, 3216
Ecl136II	GAGCTC	1 cut(s)	1008
Eco130I	CCWWGG	3 cut(s)	115, 563, 2793
Eco147I	AGGCCT	1 cut(s)	1204
Eco24I	GRGCYC	2 cut(s)	465, 1010
Eco47I	GGWCC	3 cut(s)	264, 2715, 2890
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	8 cut(s)	825, 834, 891, 1142, 1881, 2087, 2331, 3296
Eco81I	CCTNAGG	1 cut(s)	1743
Eco88I	CYCGRG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	1008
EcoRI	GAATTC	2 cut(s)	10, 2561
EcoRII	CCWGG	4 cut(s)	1031, 1666, 2427, 2908
EcoT14I	CCWWGG	3 cut(s)	115, 563, 2793
EcoT22I	ATGCAT	1 cut(s)	3029
EcoT38I	GRGCYC	2 cut(s)	465, 1010
ErhI	CCWWGG	3 cut(s)	115, 563, 2793
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	8 cut(s)	349, 722, 1150, 2315, 2585, 2957, 3031, 3112
FalI	AAGNNNNNCTT	6 cut(s)	32, 64, 2108, 2140, 3263, 3295
FaqI	GGGAC	1 cut(s)	2945
FatI	CATG	8 cut(s)	345, 718, 1146, 2311, 2581, 2953, 3027, 3108
FbaI	TGATCA	2 cut(s)	631, 1378
FblI	GTMKAC	2 cut(s)	794, 3162
Fnu4HI	GCNGC	7 cut(s)	121, 504, 1016, 2120, 2730, 2843, 2883
FokI	GGATG	9 cut(s)	884, 1309, 1539, 1643, 1747, 1965, 2046, 2660, 3108
FriOI	GRGCYC	2 cut(s)	465, 1010
Fsp4HI	GCNGC	7 cut(s)	121, 504, 1016, 2120, 2730, 2843, 2883
FspBI	CTAG	9 cut(s)	116, 324, 885, 1062, 1551, 1685, 1823, 2141, 3128
FspI	TGCGCA	1 cut(s)	3098
GlaI	GCGC	2 cut(s)	2310, 3098
GluI	GCNGC	7 cut(s)	121, 504, 1016, 2120, 2730, 2843, 2883
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	4 cut(s)	1054, 2370, 2472, 2931
HaeIII	GGCC	2 cut(s)	1204, 2352
HgaI	GACGC	3 cut(s)	112, 377, 1669
HhaI	GCGC	2 cut(s)	2311, 3099
Hin1I	GRCGYC	2 cut(s)	123, 388
Hin1II	CATG	8 cut(s)	349, 722, 1150, 2315, 2585, 2957, 3031, 3112
Hin6I	GCGC	2 cut(s)	2309, 3097
HinP1I	GCGC	2 cut(s)	2309, 3097
HincII	GTYRAC	2 cut(s)	2830, 3119
HindII	GTYRAC	2 cut(s)	2830, 3119
HindIII	AAGCTT	4 cut(s)	46, 246, 2183, 2972
HphI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
Hpy166II	GTNNAC	9 cut(s)	795, 1328, 1724, 2392, 2425, 2830, 3119, 3163, 3258
Hpy8I	GTNNAC	9 cut(s)	795, 1328, 1724, 2392, 2425, 2830, 3119, 3163, 3258
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	7 cut(s)	175, 330, 586, 1460, 2709, 3246, 3320
HpyCH4IV	ACGT	2 cut(s)	1680, 1718
HpyF10VI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2358, 2879, 3184
HpySE526I	ACGT	2 cut(s)	1680, 1718
Hsp92I	GRCGYC	2 cut(s)	123, 388
Hsp92II	CATG	8 cut(s)	349, 722, 1150, 2315, 2585, 2957, 3031, 3112
HspAI	GCGC	2 cut(s)	2309, 3097
Ksp22I	TGATCA	2 cut(s)	631, 1378
LmnI	GCTCC	7 cut(s)	134, 164, 468, 589, 1111, 2014, 2247
Lsp1109I	GCAGC	6 cut(s)	490, 1002, 2131, 2741, 2854, 2869
LweI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3326
MabI	ACCWGGT	1 cut(s)	2427
MaeI	CTAG	9 cut(s)	116, 324, 885, 1062, 1551, 1685, 1823, 2141, 3128
MaeII	ACGT	2 cut(s)	1680, 1718
MaeIII	GTNAC	5 cut(s)	394, 554, 917, 2065, 3193
MflI	RGATCY	6 cut(s)	173, 707, 976, 2514, 2788, 3225
MhlI	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
MlyI	GAGTC	4 cut(s)	1120, 1742, 2626, 3203
MmeI	TCCRAC	4 cut(s)	81, 1059, 2405, 3128
Mph1103I	ATGCAT	1 cut(s)	3029
MroXI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
MslI	CAYNNNNRTG	1 cut(s)	2449
MspCI	CTTAAG	2 cut(s)	1193, 1982
MspR9I	CCNGG	4 cut(s)	1033, 1668, 2429, 2910
MvaI	CCWGG	4 cut(s)	1033, 1668, 2429, 2910
MwoI	GCNNNNNNNGC	8 cut(s)	581, 921, 930, 1547, 1574, 2358, 2879, 3184
NlaIII	CATG	8 cut(s)	349, 722, 1150, 2315, 2585, 2957, 3031, 3112
NmuCI	GTSAC	1 cut(s)	2065
NsbI	TGCGCA	1 cut(s)	3098
NsiI	ATGCAT	1 cut(s)	3029
NspI	RCATGY	1 cut(s)	2315
PaeI	GCATGC	1 cut(s)	2315
PaeR7I	CTCGAG	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	2581
PaqCI	CACCTGC	1 cut(s)	2649
PceI	AGGCCT	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
PfoI	TCCNGGA	1 cut(s)	1666
PkrI	GCNGC	7 cut(s)	122, 505, 1017, 2121, 2731, 2844, 2884
PleI	GAGTC	4 cut(s)	1120, 1742, 2625, 3203
PpsI	GAGTC	4 cut(s)	1120, 1742, 2625, 3203
Psp124BI	GAGCTC	1 cut(s)	1010
Psp6I	CCWGG	4 cut(s)	1031, 1666, 2427, 2908
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	4 cut(s)	1031, 1666, 2427, 2908
PspPI	GGNCC	3 cut(s)	264, 2715, 2890
PstI	CTGCAG	4 cut(s)	228, 413, 1412, 2646
PstNI	CAGNNNCTG	3 cut(s)	334, 503, 921
PsuI	RGATCY	6 cut(s)	173, 707, 976, 2514, 2788, 3225
RsaI	GTAC	6 cut(s)	344, 889, 1419, 1972, 2263, 3103
RsaNI	GTAC	6 cut(s)	343, 888, 1418, 1971, 2262, 3102
RseI	CAYNNNNRTG	1 cut(s)	2449
SacI	GAGCTC	1 cut(s)	1010
SatI	GCNGC	7 cut(s)	121, 504, 1016, 2120, 2730, 2843, 2883
Sau96I	GGNCC	3 cut(s)	264, 2715, 2890
SbfI	CCTGCAGG	1 cut(s)	2646
ScaI	AGTACT	1 cut(s)	3103
SchI	GAGTC	4 cut(s)	1120, 1742, 2626, 3203
ScrFI	CCNGG	4 cut(s)	1033, 1668, 2429, 2910
SdaI	CCTGCAGG	1 cut(s)	2646
SduI	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
SexAI	ACCWGGT	1 cut(s)	2427
SfaNI	GCATC	9 cut(s)	601, 835, 1300, 1517, 1943, 1996, 2188, 2780, 3326
SfcI	CTRYAG	6 cut(s)	224, 409, 1206, 1408, 2289, 2642
Sfr274I	CTCGAG	1 cut(s)	1272
SinI	GGWCC	3 cut(s)	264, 2715, 2890
SlaI	CTCGAG	1 cut(s)	1272
SmiI	ATTTAAAT	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	2449
SphI	GCATGC	1 cut(s)	2315
Sse8387I	CCTGCAGG	1 cut(s)	2646
SseBI	AGGCCT	1 cut(s)	1204
SsiI	CCGC	4 cut(s)	120, 735, 1732, 2361
SspI	AATATT	2 cut(s)	809, 3040
SspMI	CTAG	9 cut(s)	116, 324, 885, 1062, 1551, 1685, 1823, 2141, 3128
SstI	GAGCTC	1 cut(s)	1010
StuI	AGGCCT	1 cut(s)	1204
StyD4I	CCNGG	4 cut(s)	1031, 1666, 2427, 2908
StyI	CCWWGG	3 cut(s)	115, 563, 2793
SwaI	ATTTAAAT	1 cut(s)	880
TaiI	ACGT	2 cut(s)	1683, 1721
TaqI	TCGA	7 cut(s)	251, 293, 955, 1273, 2158, 2341, 3207
TatI	WGTACW	3 cut(s)	1417, 2261, 3101
TauI	GCSGC	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	2065
TseI	GCWGC	6 cut(s)	503, 1015, 2119, 2729, 2842, 2882
Tsp45I	GTSAC	1 cut(s)	2065
TspDTI	ATGAA	8 cut(s)	735, 774, 888, 1242, 1452, 1659, 2598, 2664
TspGWI	ACGGA	2 cut(s)	1156, 2949
Vha464I	CTTAAG	2 cut(s)	1193, 1982
VpaK11BI	GGWCC	3 cut(s)	264, 2715, 2890
XapI	RAATTY	6 cut(s)	10, 875, 940, 1248, 2365, 2561
XbaI	TCTAGA	2 cut(s)	2140, 3127
XceI	RCATGY	1 cut(s)	2315
XhoI	CTCGAG	1 cut(s)	1272
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	794, 3162
XmnI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
XspI	CTAG	9 cut(s)	116, 324, 885, 1062, 1551, 1685, 1823, 2141, 3128
ZrmI	AGTACT	1 cut(s)	3103
Zsp2I	ATGCAT	1 cut(s)	3029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.