Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Reverse (-)

19287680 .. 19290154

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGTAGAGAATAACAGAAAACTTCATAATCAGTTCGATACGAAAGCTTCAGCTTCTTCACACAGTGGTTCAAATACCGGAAAGGATACATTTCACGGGGTTTCGGTATTTGTGGATGGCTACACAGTTCCTTCCAATCAGGAACTGCAAGGCTACATGTTGAACTGTGGTGGAAAATATGAGAATTACTTTTCTAGACACCATGTCACACATATTATTTGCAGTAATCTACCCAACATCAAAACAAAAAATTTGAGGATTTCAGCCTCAAGGAATACAGAAAAGCAATCTAATCTTCATTCTATAGCTAGGGAGAATGTGACTATTGTGAGGATTGGAGGAGTGGTGGAGCTTCAGGTCCGATGGACAATGATTCACTTGGTACTCAAACTTCAATGTGCAATAGTCTGTCCAGCGCAGAACCTTCTCTGGATCAGGTTTCTGAACCACCACCTCTATGTCATCTTGATTTGGGAGTTATTGAGTCTTCCTCCAGAATTATTTACGGAACTAAATGGAATCTATGGTGGGAAGTTAGTTGATTATGTTTCCAAAAATAAACAAGAAAATACCAGTGCTACTGTACCACATGAACAAACACATGGTTCAGTTGGTCTCTTGTTCTTACGCTTCTTGTTTCGATGCCTATGTTTTTATTTCAGAAAAAAGTTGTTGTTATTGAGAATCTTTTGTTCTAGTTGTTTATTATATATCCACGTTTTGGACTTCTGCAGTTATATAATTGGTATTTCTCCTTATGTGATGCAGCATACAGTAGTAGAAAAGGAAGAAATTCCTTCTTCTGCAAGAGGGTACCATGTGGAAGTTTCTACATCAGGTCCTGGAAACACTGATATAATGCCGTCTTCTTTAAGTCAAGTAGATACCTCAGTGTTGCAACAATTGCCTCAAGAACTGAGAATTGACATACTTGGGCAGCAACCTGCACACAGGACAAATGACATATCTTCAAGTGCTTCCTTGGGCCCCCCTGCAGAAAAGCCGCCGGAATTGTTAGGTCTGAGTGACAAGGTTCATTCGGGCACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

351

Amino Acids

39.28

Weight (kDa)

8.5

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	952
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	2 cut(s)	813, 1043
AccB7I	CCANNNNNTGG	1 cut(s)	721
AciI	CCGC	1 cut(s)	1004
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	250, 792
AcuI	CTGAAG	2 cut(s)	33, 338
AdeI	CACNNNGTG	2 cut(s)	65, 1050
AfaI	GTAC	3 cut(s)	384, 585, 815
AfiI	CCNNNNNNNGG	1 cut(s)	721
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	4 cut(s)	72, 163, 395, 972
AhdI	GACNNNNNGTC	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	4 cut(s)	47, 53, 308, 352
AluI	AGCT	4 cut(s)	47, 53, 308, 352
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	2 cut(s)	145, 842
AoxI	GGCC	1 cut(s)	985
ApaI	GGGCCC	1 cut(s)	989
ApeKI	GCWGC	2 cut(s)	766, 937
ApoI	RAATTY	2 cut(s)	250, 792
Asp700I	GAANNNNTTC	1 cut(s)	792
Asp718I	GGTACC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	4 cut(s)	358, 839, 985, 986
AvaII	GGWCC	2 cut(s)	358, 839
BaeGI	GKGCMC	2 cut(s)	989, 1046
BaeI	ACNNNNGTAYC	2 cut(s)	876, 909
BanI	GGYRCC	2 cut(s)	813, 1043
BanII	GRGCYC	1 cut(s)	989
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbsI	GAAGAC	2 cut(s)	479, 858
BbvI	GCAGC	2 cut(s)	778, 949
BccI	CCATC	2 cut(s)	110, 357
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	1 cut(s)	843
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	3 cut(s)	195, 309, 696
BfmI	CTRYAG	3 cut(s)	303, 730, 993
BfuAI	ACCTGC	1 cut(s)	952
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	767, 938, 1004
BlsI	GCNGC	3 cut(s)	768, 939, 1005
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	2 cut(s)	358, 839
BmeRI	GACNNNNNGTC	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	358, 839, 985, 986
BmiI	GGNNCC	4 cut(s)	815, 987, 988, 1045
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	2 cut(s)	632, 753
BpiI	GAAGAC	2 cut(s)	479, 858
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	253, 894
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	981
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse1I	ACTGG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	981
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	903, 908, 1013
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	2 cut(s)	989, 1046
BseXI	GCAGC	2 cut(s)	778, 949
BsgI	GTGCAG	1 cut(s)	930
BshFI	GGCC	1 cut(s)	987
BshNI	GGYRCC	2 cut(s)	813, 1043
BsiSI	CCGG	2 cut(s)	78, 1007
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	987
Bso31I	GGTCTC	1 cut(s)	620
Bsp120I	GGGCCC	1 cut(s)	985
Bsp1286I	GDGCHC	2 cut(s)	989, 1046
Bsp143I	GATC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	1004
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	3 cut(s)	902, 909, 1014
BspLI	GGNNCC	4 cut(s)	815, 987, 988, 1045
BspMAI	CTGCAG	2 cut(s)	734, 997
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	2 cut(s)	813, 1043
BspTNI	GGTCTC	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	1 cut(s)	981
BssMI	GATC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	981
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	5 cut(s)	65, 127, 167, 583, 775
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstDEI	CTNAG	3 cut(s)	889, 917, 1022
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	904
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	3 cut(s)	303, 730, 993
BstSLI	GKGCMC	2 cut(s)	989, 1046
BstV1I	GCAGC	2 cut(s)	778, 949
BstV2I	GAAGAC	2 cut(s)	479, 858
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	987
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	4 cut(s)	70, 580, 849, 897
BveI	ACCTGC	1 cut(s)	952
CaiI	CAGNNNCTG	2 cut(s)	145, 842
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	4 cut(s)	358, 839, 985, 986
Csp6I	GTAC	3 cut(s)	383, 584, 814
CviAII	CATG	5 cut(s)	157, 203, 590, 602, 818
CviJI	RGCY	9 cut(s)	47, 53, 120, 153, 266, 308, 352, 987, 1003
CviKI_1	RGCY	9 cut(s)	47, 53, 120, 153, 266, 308, 352, 987, 1003
CviQI	GTAC	3 cut(s)	383, 584, 814
DdeI	CTNAG	3 cut(s)	889, 917, 1022
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
DraIII	CACNNNGTG	2 cut(s)	65, 1050
DriI	GACNNNNNGTC	1 cut(s)	203
Eam1105I	GACNNNNNGTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	981
Eco24I	GRGCYC	1 cut(s)	989
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	358, 839
Eco57I	CTGAAG	2 cut(s)	33, 338
EcoO109I	RGGNCCY	2 cut(s)	839, 986
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	981
EcoT38I	GRGCYC	1 cut(s)	989
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	5 cut(s)	160, 206, 593, 605, 821
FatI	CATG	5 cut(s)	156, 202, 589, 601, 817
Fnu4HI	GCNGC	3 cut(s)	767, 938, 1004
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	989
Fsp4HI	GCNGC	3 cut(s)	767, 938, 1004
FspBI	CTAG	3 cut(s)	195, 309, 696
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	3 cut(s)	767, 938, 1004
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	2 cut(s)	78, 1007
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	5 cut(s)	160, 206, 593, 605, 821
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	4 cut(s)	373, 484, 519, 684
HpaII	CCGG	2 cut(s)	78, 1007
Hpy188I	TCNGA	4 cut(s)	362, 444, 662, 1023
Hpy188III	TCNNGA	6 cut(s)	140, 195, 430, 466, 494, 911
HpyAV	CCTTC	3 cut(s)	141, 434, 807
HpyCH4III	ACNGT	5 cut(s)	65, 127, 167, 583, 775
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	9 cut(s)	148, 222, 401, 732, 766, 806, 898, 947, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	904
HpyF3I	CTNAG	3 cut(s)	889, 917, 1022
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	160, 206, 593, 605, 821
HspAI	GCGC	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	817
Kzo9I	GATC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	778, 949
LweI	GCATC	2 cut(s)	632, 753
MaeI	CTAG	3 cut(s)	195, 309, 696
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	205, 319, 1025
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	7 cut(s)	48, 287, 479, 792, 800, 858, 960
MfeI	CAATTG	1 cut(s)	902
MhlI	GDGCHC	2 cut(s)	989, 1046
MluCI	AATT	8 cut(s)	184, 250, 497, 741, 792, 902, 921, 1010
MlyI	GAGTC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	249, 277, 324, 332, 464, 501, 803, 898, 918
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	1 cut(s)	872
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	2 cut(s)	78, 1007
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	1 cut(s)	904
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	5 cut(s)	160, 206, 593, 605, 821
NlaIV	GGNNCC	4 cut(s)	815, 987, 988, 1045
NmuCI	GTSAC	3 cut(s)	205, 319, 1025
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	373, 519, 684
PflMI	CCANNNNNTGG	1 cut(s)	721
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	3 cut(s)	768, 939, 1005
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	839
PscI	ACATGT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	4 cut(s)	815, 987, 988, 1045
PspOMI	GGGCCC	1 cut(s)	985
PspPI	GGNCC	4 cut(s)	358, 839, 985, 986
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	2 cut(s)	734, 997
PstNI	CAGNNNCTG	2 cut(s)	145, 842
RsaI	GTAC	3 cut(s)	384, 585, 815
RsaNI	GTAC	3 cut(s)	383, 584, 814
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	872
SatI	GCNGC	3 cut(s)	767, 938, 1004
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	4 cut(s)	358, 839, 985, 986
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	2 cut(s)	989, 1046
SfaNI	GCATC	2 cut(s)	632, 753
SfcI	CTRYAG	3 cut(s)	303, 730, 993
SinI	GGWCC	2 cut(s)	358, 839
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	268, 909
SmoI	CTYRAG	2 cut(s)	268, 909
Sse9I	AATT	8 cut(s)	184, 250, 497, 741, 792, 902, 921, 1010
SsiI	CCGC	1 cut(s)	1004
SspMI	CTAG	3 cut(s)	195, 309, 696
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	5 cut(s)	65, 127, 167, 583, 775
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	2 cut(s)	36, 640
TasI	AATT	8 cut(s)	184, 250, 497, 741, 792, 902, 921, 1010
TauI	GCSGC	1 cut(s)	1006
TfiI	GAWTC	3 cut(s)	373, 519, 684
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TscAI	CASTG	4 cut(s)	70, 580, 856, 897
TseFI	GTSAC	3 cut(s)	205, 319, 1025
TseI	GCWGC	2 cut(s)	766, 937
Tsp45I	GTSAC	3 cut(s)	205, 319, 1025
TspDTI	ATGAA	4 cut(s)	14, 287, 606, 1025
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	4 cut(s)	70, 580, 856, 897
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	2 cut(s)	358, 839
XapI	RAATTY	2 cut(s)	250, 792
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	3 cut(s)	195, 309, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.