Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Reverse (-)

16043921 .. 16053370

Gene Structure 9450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24180.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGAAATCCCTACTGGTCTTAAACCCTCTTCAGCTCCCCAAACCCTTCCCTTGCCCTAAAACCCTATACCCTATCCAATTCCCGCAACCTTCAATTCACGGCCATGGCTGCCGCTCCAGAACCAAGCACGGCGCCATTTCTCTCCGCCAGCTCAGAATTCGCTCCGCTTCTTCCAACTCCGTTGCAGCTCTCACCACCGCAGACGGAGACGCCGAGTCCGCTCAGCTCTTCGAGAAATTGAAGGATGCAGAGAGACAAAGGATTAATGAGTTGGAAGAACTTGAGAAGAAGGCGAATATACAATTAGAGAGGCAGCTTGTCATGGCTTCATATTGGAGCAGGGCCTTATTGACTATGCGTGGCAAGTTGAAGGGGACAGAGTGGGATCCTGAAAATTCACATAGGATTGATTTTAGTGACTTTTTGAGACTGCTTAACTCAAACAATGTCCAGTTTATGGAGTACTCAAACTATGTGATCCTGCCTTACTACAAAGATGAGAAAATGGGAGAAGTGGATGGGAATTCAAAAAAGGAGATTATTTTTAGGCGTCATGTGGTTGACCGAATGCCAATAGATTGTTGGAATGATGTTTGGCAGAAATTGCATCAGCAAATAGTAAATGTTGAAGTATATAATGTGGATACAGTACCTGCAGAAGTCTATTCTACTGTCGCAACTGCAGTCATATGGTCCATGCGGCTTGCCTTGTCTATTGTATTATATCTGTGGATTGATAACATGATGCGACCAATTTATGCGAAGTTGATACCTACTGATCTAGGAACTCCTAGCAAAAAAACAAGAAAACCACTCAAGCGCCGTGCCCTCGGATCATTAGGAAAGAGCCGGGCCAAATTCATATCTGCAGAAGAATCTACTGGGATTACCTTTGATGATTTTGCTGGCCAGGAGTATATAAAGAGGGAGCTGCAAGAGATTGTACGAATTCTAAAGAATGATGAAGAGTTTCAGGACAAAGGCATCTATTGCCCGAAAGGTGTGCTTCTCCATGGACCTCCCGGAACAGGAAAAACACTGCTGGCCAAAGCTATTGCTGGTGAAGCAGGCCTGCCATTTTTTGCAGCAAATGGCACAGATTTTGTAGAGATGTTTGTCGGTGTTGCAGCATCTCGTGTGAAGGATCTATTTGCTAGTGCCAGATCCTTCACACCCTCCATTATATTTATTGATGAGATAGATGCCATTGGTAGCAAACGTGGTGGACCAGATATTGGTGGGGGTGGTGCAGAACGAGAACAAGGCCTACTTCAGATACTGACAGAGATGGATGGATTTAAAGTTGCTACCTCACAGGTCCTTGTGATAGGTGCAACAAATAGGCTAGATATCCTAGATCCTGCTTTGTTGAGGAAAGGTCGTTTTGACAAGATTATAAGAGTCGGTTTGCCGTCAAAGGATGGTAGATATGCTATATTGAAGGTGCATGCAAGAAATAAGTTTTTTCGTTCTGAAGAGGAGAAGGAGACTCTTCTTCAGGAAATTGCAGAGCTTACAGAAGATTTTACTGGTGCAGAGCTGCAGAACATACTGAATGAAGCTGGTATTTTGACTGCCAGGAAGGACTTAGATTACATTGGACGAGAAGAGCTACTAGAGGCTTTGAAAAGGCAAAAGGGCACATTTGAAACCGGTCAGGAAGACAGTACTGAAATGCCAGAAGAATTAAGATTGAGATTGGCGTATAGAGAAGCAGCTGTTGCTGTCCTGGCGTGCTACTTTCCAGATCCATATCGTCCTATCAGTGAGACAGATATCAAATCCATTAGTAGTCAGCCAAATATGCGCTACACTGAGATATCTGGCAAGGTCTTCTCAAGAAAATCAGATTTCGTAAATGCGATAGTGCGCGCATGTGCTCCTAGAGTAATTGAGGAGGAGATGTTTGGGGTTGACAATTTATGTTGGATCTCTGCAAAAGCTACACTGGAAGCCTCGAGGCGTGCAGAATTTCTTATTCTTCAGACAGGAATGACAGCATATGGGAAAGCATACTACAGAAACCAAAGTGATCTTGTGCCAAATCTTGCAGCTAAGCTTGAAGCACTCCGTGATGAATATATGCGTTATGCTGTTGACAAGTGTTCATCTGTGTTAAGGGAGTACCATTCAGCAGTAGAAACAATCACAGATATTTTACTTGACAAGGGAGAAATCAAAGCCGAGGAAATTTGGGACATATACAAAAGGGCACCTCGAATACCTCAGCCTGCAGTGAATGCAGTTGATGAATACGGAGCCCTAGTTTATGCTGGGCGGTGGGGAATACATGGGATTACACTTCCAGGAAGAGTTACATTTTCACCTGGAAATGTTGGTTTTTCAACCTTCGGTGCTCCCCGGCCTATGGAGACCCAAAGAGTTAATGATGAAACCTGGGAGCTAATCGATGACATCTGGGATAAAAGGGTTCAAGAAATTAAAGCTGAAGCTTCTGCAGAGGTTGAAGAAGACAAAGAGAGACCACAACTTTTGATGGCCGGCCATTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

839

Amino Acids

94.57

Weight (kDa)

6.06

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	302 - 408	1.1e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	340 - 474	1.4e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	504 - 543	2.8e-09	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1397
AbsI	CCTCGAGG	1 cut(s)	1957
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	2 cut(s)	131, 2212
AccB7I	CCANNNNNTGG	2 cut(s)	457, 1235
AccBSI	CCGCTC	2 cut(s)	114, 221
AccII	CGCG	1 cut(s)	1872
AciI	CCGC	8 cut(s)	83, 112, 145, 165, 198, 219, 700, 2278
AclWI	GGATC	9 cut(s)	380, 393, 472, 841, 1152, 1158, 1352, 1742, 1937
AcoI	YGGCCR	5 cut(s)	100, 907, 1044, 2499, 2503
AcsI	RAATTY	7 cut(s)	156, 394, 523, 857, 948, 1970, 2190
AcuI	CTGAAG	6 cut(s)	14, 1256, 1481, 1494, 1967, 2469
AcyI	GRCGYC	3 cut(s)	132, 210, 550
AdeI	CACNNNGTG	1 cut(s)	2072
AfaI	GTAC	5 cut(s)	464, 651, 945, 1669, 2126
AfiI	CCNNNNNNNGG	4 cut(s)	457, 1028, 1235, 2368
AgeI	ACCGGT	1 cut(s)	1652
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	6 cut(s)	909, 1577, 1728, 2305, 2326, 2396
Alw21I	GWGCWC	2 cut(s)	1882, 2359
Alw26I	GTCTC	7 cut(s)	201, 247, 421, 1481, 1763, 2366, 2476
AlwI	GGATC	9 cut(s)	380, 393, 472, 841, 1152, 1158, 1352, 1742, 1937
AlwNI	CAGNNNCTG	2 cut(s)	653, 1279
Ama87I	CYCGRG	1 cut(s)	1957
ApeKI	GCWGC	9 cut(s)	108, 185, 313, 931, 1085, 1127, 1540, 1715, 2051
ApoI	RAATTY	7 cut(s)	156, 394, 523, 857, 948, 1970, 2190
AseI	ATTAAT	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	1652
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	5 cut(s)	134, 822, 1809, 1872, 1874
AspS9I	GGNCC	6 cut(s)	342, 693, 852, 1016, 1226, 1318
AsuC2I	CCSGG	3 cut(s)	851, 1023, 2362
AsuHPI	GGTGA	3 cut(s)	184, 1073, 2316
AvaI	CYCGRG	1 cut(s)	1957
AvaII	GGWCC	4 cut(s)	693, 1016, 1226, 1318
BaeGI	GKGCMC	3 cut(s)	829, 1643, 2215
BalI	TGGCCA	2 cut(s)	909, 1046
BamHI	GGATCC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	131, 2212
BanII	GRGCYC	1 cut(s)	2263
BauI	CACGAG	1 cut(s)	1134
BbsI	GAAGAC	3 cut(s)	1668, 1825, 2478
Bbv12I	GWGCWC	2 cut(s)	1882, 2359
BbvCI	CCTCAGC	1 cut(s)	2226
BbvI	GCAGC	9 cut(s)	95, 197, 325, 918, 1097, 1139, 1527, 1727, 2063
BccI	CCATC	5 cut(s)	512, 1282, 1286, 1415, 2491
BceAI	ACGGC	4 cut(s)	115, 145, 807, 1396
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciT130I	CCWGG	6 cut(s)	911, 1579, 1730, 2307, 2328, 2398
BciVI	GTATCC	1 cut(s)	637
BcnI	CCSGG	3 cut(s)	851, 1023, 2362
BcoDI	GTCTC	7 cut(s)	201, 247, 421, 1481, 1763, 2366, 2476
BfaI	CTAG	8 cut(s)	782, 792, 1155, 1346, 1355, 1616, 1884, 2264
BfmI	CTRYAG	7 cut(s)	654, 681, 867, 1541, 2017, 2232, 2457
BfoI	RGCGCY	2 cut(s)	135, 823
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	637
BlpI	GCTNAGC	2 cut(s)	222, 2055
BmcAI	AGTACT	2 cut(s)	464, 1669
Bme1390I	CCNGG	9 cut(s)	851, 911, 1023, 1579, 1730, 2307, 2328, 2362, 2398
Bme18I	GGWCC	4 cut(s)	693, 1016, 1226, 1318
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	1957
BmgT120I	GGNCC	6 cut(s)	342, 693, 852, 1016, 1226, 1318
BmiI	GGNNCC	4 cut(s)	133, 387, 2214, 2260
BmrFI	CCNGG	9 cut(s)	851, 911, 1023, 1579, 1730, 2307, 2328, 2362, 2398
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	6 cut(s)	235, 616, 735, 993, 1139, 1192
BmuI	ACTGGG	1 cut(s)	891
BpiI	GAAGAC	3 cut(s)	1668, 1825, 2478
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	2226
Bpu1102I	GCTNAGC	2 cut(s)	222, 2055
BpuEI	CTTGAG	3 cut(s)	302, 800, 1822
BpuMI	CCSGG	3 cut(s)	851, 1023, 2362
Bsa29I	ATCGAT	1 cut(s)	2409
BsaBI	GATNNNNATC	1 cut(s)	1752
BsaHI	GRCGYC	3 cut(s)	132, 210, 550
BsaI	GGTCTC	2 cut(s)	2366, 2476
BsaJI	CCNNGG	6 cut(s)	103, 829, 1012, 2184, 2360, 2397
BsaWI	WCCGGW	1 cut(s)	1652
BsaXI	ACNNNNNCTCC	4 cut(s)	1889, 1919, 2250, 2280
Bsc4I	CCNNNNNNNGG	4 cut(s)	457, 1028, 1235, 2368
Bse118I	RCCGGY	2 cut(s)	1652, 2501
Bse1I	ACTGG	5 cut(s)	18, 451, 886, 1534, 1953
Bse8I	GATNNNNATC	1 cut(s)	1752
BseBI	CCWGG	6 cut(s)	911, 1579, 1730, 2307, 2328, 2398
BseCI	ATCGAT	1 cut(s)	2409
BseDI	CCNNGG	6 cut(s)	103, 829, 1012, 2184, 2360, 2397
BseGI	GGATG	4 cut(s)	250, 523, 1297, 1426
BseJI	GATNNNNATC	1 cut(s)	1752
BseLI	CCNNNNNNNGG	4 cut(s)	457, 1028, 1235, 2368
BseMII	CTCAG	4 cut(s)	166, 236, 1806, 2240
BseNI	ACTGG	5 cut(s)	18, 451, 886, 1534, 1953
BsePI	GCGCGC	1 cut(s)	1870
BseRI	GAGGAG	3 cut(s)	1493, 1910, 1913
BseSI	GKGCMC	3 cut(s)	829, 1643, 2215
BseXI	GCAGC	9 cut(s)	95, 197, 325, 918, 1097, 1139, 1527, 1727, 2063
BseYI	CCCAGC	1 cut(s)	2273
BsgI	GTGCAG	3 cut(s)	1269, 1554, 1986
Bsh1236I	CGCG	1 cut(s)	1872
BshNI	GGYRCC	2 cut(s)	131, 2212
BshTI	ACCGGT	1 cut(s)	1652
BshVI	ATCGAT	1 cut(s)	2409
BsiHKAI	GWGCWC	2 cut(s)	1882, 2359
BsiHKCI	CYCGRG	1 cut(s)	1957
BsiSI	CCGG	5 cut(s)	850, 1023, 1653, 2362, 2502
BslFI	GGGAC	2 cut(s)	388, 2210
BslI	CCNNNNNNNGG	4 cut(s)	457, 1028, 1235, 2368
BsmAI	GTCTC	7 cut(s)	201, 247, 421, 1481, 1763, 2366, 2476
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	388, 2210
BsmI	GAATGC	2 cut(s)	573, 2245
Bso31I	GGTCTC	2 cut(s)	2366, 2476
BsoBI	CYCGRG	1 cut(s)	1957
Bsp1286I	GDGCHC	6 cut(s)	829, 1643, 1882, 2215, 2263, 2359
Bsp1720I	GCTNAGC	2 cut(s)	222, 2055
Bsp19I	CCATGG	2 cut(s)	103, 1012
BspACI	CCGC	8 cut(s)	83, 112, 145, 165, 198, 219, 700, 2278
BspCNI	CTCAG	4 cut(s)	165, 235, 1807, 2239
BspDI	ATCGAT	1 cut(s)	2409
BspFNI	CGCG	1 cut(s)	1872
BspLI	GGNNCC	4 cut(s)	133, 387, 2214, 2260
BspMAI	CTGCAG	6 cut(s)	658, 685, 871, 1545, 2236, 2461
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	9 cut(s)	380, 393, 472, 841, 1152, 1158, 1352, 1742, 1937
BspQI	GCTCTTC	2 cut(s)	233, 1602
BspT107I	GGYRCC	2 cut(s)	131, 2212
BspTNI	GGTCTC	2 cut(s)	2366, 2476
BsrBI	CCGCTC	2 cut(s)	114, 221
BsrFI	RCCGGY	2 cut(s)	1652, 2501
BsrI	ACTGG	5 cut(s)	18, 451, 886, 1534, 1953
BssAI	RCCGGY	2 cut(s)	1652, 2501
BssECI	CCNNGG	6 cut(s)	103, 829, 1012, 2184, 2360, 2397
BssHII	GCGCGC	1 cut(s)	1870
BssNI	GRCGYC	3 cut(s)	132, 210, 550
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	2 cut(s)	103, 1012
Bst2BI	CACGAG	1 cut(s)	1134
Bst2UI	CCWGG	6 cut(s)	911, 1579, 1730, 2307, 2328, 2398
Bst4CI	ACNGT	3 cut(s)	649, 673, 1667
Bst6I	CTCTTC	7 cut(s)	33, 233, 960, 1470, 1497, 1602, 2305
BstACI	GRCGYC	3 cut(s)	132, 210, 550
BstAPI	GCANNNNNTGC	4 cut(s)	604, 990, 1721, 2240
BstDEI	CTNAG	6 cut(s)	152, 222, 1588, 1815, 2055, 2226
BstDSI	CCRYGG	2 cut(s)	103, 1012
BstF5I	GGATG	4 cut(s)	250, 523, 1297, 1426
BstFNI	CGCG	1 cut(s)	1872
BstH2I	RGCGCY	2 cut(s)	135, 823
BstHHI	GCGC	5 cut(s)	134, 822, 1809, 1872, 1874
BstMAI	GTCTC	7 cut(s)	201, 247, 421, 1481, 1763, 2366, 2476
BstMWI	GCNNNNNNNGC	9 cut(s)	108, 218, 604, 990, 1064, 1721, 1730, 1804, 2240
BstNI	CCWGG	6 cut(s)	911, 1579, 1730, 2307, 2328, 2398
BstNSI	RCATGY	2 cut(s)	1451, 1878
BstSCI	CCNGG	9 cut(s)	849, 909, 1021, 1577, 1728, 2305, 2326, 2360, 2396
BstSFI	CTRYAG	7 cut(s)	654, 681, 867, 1541, 2017, 2232, 2457
BstSLI	GKGCMC	3 cut(s)	829, 1643, 2215
BstUI	CGCG	1 cut(s)	1872
BstV1I	GCAGC	9 cut(s)	95, 197, 325, 918, 1097, 1139, 1527, 1727, 2063
BstV2I	GAAGAC	3 cut(s)	1668, 1825, 2478
BstX2I	RGATCY	6 cut(s)	385, 1144, 1163, 1357, 1747, 1929
BstYI	RGATCY	6 cut(s)	385, 1144, 1163, 1357, 1747, 1929
Bsu15I	ATCGAT	1 cut(s)	2409
BsuI	GTATCC	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	2409
BtgI	CCRYGG	2 cut(s)	103, 1012
BtsCI	GGATG	4 cut(s)	250, 523, 1297, 1426
BtsI	GCAGTG	2 cut(s)	1037, 2241
BtsIMutI	CAGTG	5 cut(s)	1037, 1771, 1812, 1946, 2241
BveI	ACCTGC	1 cut(s)	661
CaiI	CAGNNNCTG	2 cut(s)	653, 1279
CfoI	GCGC	5 cut(s)	134, 822, 1809, 1872, 1874
Cfr10I	RCCGGY	2 cut(s)	1652, 2501
Cfr13I	GGNCC	6 cut(s)	342, 693, 852, 1016, 1226, 1318
ClaI	ATCGAT	1 cut(s)	2409
CseI	GACGC	2 cut(s)	218, 539
Csp6I	GTAC	5 cut(s)	463, 650, 944, 1668, 2125
CspAI	ACCGGT	1 cut(s)	1652
CspCI	CAANNNNNGTGG	4 cut(s)	1204, 1239, 2475, 2510
CviAII	CATG	9 cut(s)	104, 322, 554, 697, 742, 1013, 1448, 1875, 2291
CviQI	GTAC	5 cut(s)	463, 650, 944, 1668, 2125
DdeI	CTNAG	6 cut(s)	152, 222, 1588, 1815, 2055, 2226
DinI	GGCGCC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	1300
DraIII	CACNNNGTG	1 cut(s)	2072
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	5 cut(s)	100, 907, 1044, 2499, 2503
Eam1104I	CTCTTC	7 cut(s)	33, 233, 960, 1470, 1497, 1602, 2305
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	7 cut(s)	33, 233, 960, 1470, 1497, 1602, 2305
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	103, 1012
Eco147I	AGGCCT	2 cut(s)	1071, 1266
Eco24I	GRGCYC	1 cut(s)	2263
Eco31I	GGTCTC	2 cut(s)	2366, 2476
Eco32I	GATATC	3 cut(s)	1351, 1777, 1821
Eco47I	GGWCC	4 cut(s)	693, 1016, 1226, 1318
Eco57I	CTGAAG	6 cut(s)	14, 1256, 1481, 1494, 1967, 2469
Eco88I	CYCGRG	1 cut(s)	1957
EcoO109I	RGGNCCY	2 cut(s)	342, 1318
EcoRI	GAATTC	3 cut(s)	156, 523, 948
EcoRII	CCWGG	6 cut(s)	909, 1577, 1728, 2305, 2326, 2396
EcoRV	GATATC	3 cut(s)	1351, 1777, 1821
EcoT14I	CCWWGG	2 cut(s)	103, 1012
EcoT38I	GRGCYC	1 cut(s)	2263
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	2 cut(s)	103, 1012
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	9 cut(s)	107, 325, 557, 700, 745, 1016, 1451, 1878, 2294
FalI	AAGNNNNNCTT	4 cut(s)	990, 1022, 1254, 1286
FaqI	GGGAC	2 cut(s)	388, 2210
FatI	CATG	9 cut(s)	103, 321, 553, 696, 741, 1012, 1447, 1874, 2290
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	2 cut(s)	689, 2002
FokI	GGATG	4 cut(s)	257, 530, 1304, 1433
FriOI	GRGCYC	1 cut(s)	2263
FseI	GGCCGGCC	1 cut(s)	2505
FspBI	CTAG	8 cut(s)	782, 792, 1155, 1346, 1355, 1616, 1884, 2264
GlaI	GCGC	5 cut(s)	133, 821, 1808, 1871, 1873
GsaI	CCCAGC	1 cut(s)	2277
GsuI	CTGGAG	1 cut(s)	100
HaeII	RGCGCY	2 cut(s)	135, 823
HapII	CCGG	5 cut(s)	850, 1023, 1653, 2362, 2502
HgaI	GACGC	2 cut(s)	218, 539
HhaI	GCGC	5 cut(s)	134, 822, 1809, 1872, 1874
Hin1I	GRCGYC	3 cut(s)	132, 210, 550
Hin1II	CATG	9 cut(s)	107, 325, 557, 700, 745, 1016, 1451, 1878, 2294
Hin6I	GCGC	5 cut(s)	132, 820, 1807, 1870, 1872
HinP1I	GCGC	5 cut(s)	132, 820, 1807, 1870, 1872
HincII	GTYRAC	3 cut(s)	562, 1915, 2098
HindII	GTYRAC	3 cut(s)	562, 1915, 2098
HindIII	AAGCTT	2 cut(s)	2057, 2451
HinfI	GANTC	4 cut(s)	215, 875, 1401, 1489
HpaII	CCGG	5 cut(s)	850, 1023, 1653, 2362, 2502
HphI	GGTGA	3 cut(s)	184, 1073, 2316
Hpy166II	GTNNAC	4 cut(s)	562, 1226, 1915, 2098
Hpy188I	TCNGA	6 cut(s)	155, 833, 1275, 1474, 1849, 1986
Hpy188III	TCNNGA	9 cut(s)	117, 232, 389, 974, 1499, 1658, 1745, 1839, 2435
Hpy8I	GTNNAC	4 cut(s)	562, 1226, 1915, 2098
HpyCH4III	ACNGT	3 cut(s)	649, 673, 1667
HpyCH4IV	ACGT	1 cut(s)	1219
HpyF10VI	GCNNNNNNNGC	9 cut(s)	108, 218, 604, 990, 1064, 1721, 1730, 1804, 2240
HpyF3I	CTNAG	6 cut(s)	152, 222, 1588, 1815, 2055, 2226
HpySE526I	ACGT	1 cut(s)	1219
Hsp92I	GRCGYC	3 cut(s)	132, 210, 550
Hsp92II	CATG	9 cut(s)	107, 325, 557, 700, 745, 1016, 1451, 1878, 2294
HspAI	GCGC	5 cut(s)	132, 820, 1807, 1870, 1872
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	2501
KroNI	GCCGGC	1 cut(s)	2503
LguI	GCTCTTC	2 cut(s)	233, 1602
LmnI	GCTCC	9 cut(s)	39, 119, 167, 336, 928, 1885, 2258, 2362, 2401
Lsp1109I	GCAGC	9 cut(s)	95, 197, 325, 918, 1097, 1139, 1527, 1727, 2063
LweI	GCATC	6 cut(s)	235, 616, 735, 993, 1139, 1192
MaeI	CTAG	8 cut(s)	782, 792, 1155, 1346, 1355, 1616, 1884, 2264
MaeII	ACGT	1 cut(s)	1219
MaeIII	GTNAC	2 cut(s)	416, 2314
MbiI	CCGCTC	2 cut(s)	114, 221
MflI	RGATCY	6 cut(s)	385, 1144, 1163, 1357, 1747, 1929
MhlI	GDGCHC	6 cut(s)	829, 1643, 1882, 2215, 2263, 2359
MlsI	TGGCCA	2 cut(s)	909, 1046
MluNI	TGGCCA	2 cut(s)	909, 1046
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	224, 1410, 1483
MmeI	TCCRAC	4 cut(s)	198, 252, 563, 1907
Mox20I	TGGCCA	2 cut(s)	909, 1046
MroNI	GCCGGC	1 cut(s)	2501
MroXI	GAANNNNTTC	1 cut(s)	969
MscI	TGGCCA	2 cut(s)	909, 1046
MseI	TTAA	9 cut(s)	20, 264, 435, 1299, 1688, 2117, 2385, 2442, 2515
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	909, 1046
MspA1I	CMGCKG	1 cut(s)	1718
MspI	CCGG	5 cut(s)	850, 1023, 1653, 2362, 2502
MspR9I	CCNGG	9 cut(s)	851, 911, 1023, 1579, 1730, 2307, 2328, 2362, 2398
Mva1269I	GAATGC	2 cut(s)	573, 2245
MvaI	CCWGG	6 cut(s)	911, 1579, 1730, 2307, 2328, 2398
MvnI	CGCG	1 cut(s)	1872
MwoI	GCNNNNNNNGC	9 cut(s)	108, 218, 604, 990, 1064, 1721, 1730, 1804, 2240
NaeI	GCCGGC	1 cut(s)	2503
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	3 cut(s)	851, 1023, 2362
NcoI	CCATGG	2 cut(s)	103, 1012
NdeI	CATATG	2 cut(s)	689, 2002
NgoMIV	GCCGGC	1 cut(s)	2501
NlaIII	CATG	9 cut(s)	107, 325, 557, 700, 745, 1016, 1451, 1878, 2294
NlaIV	GGNNCC	4 cut(s)	133, 387, 2214, 2260
NmeAIII	GCCGAG	2 cut(s)	238, 2209
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	2 cut(s)	1451, 1878
PaeI	GCATGC	1 cut(s)	1451
PaeR7I	CTCGAG	1 cut(s)	1957
PauI	GCGCGC	1 cut(s)	1870
PceI	AGGCCT	2 cut(s)	1071, 1266
PciSI	GCTCTTC	2 cut(s)	233, 1602
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	2 cut(s)	573, 2245
PdiI	GCCGGC	1 cut(s)	2503
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	1 cut(s)	875
PflMI	CCANNNNNTGG	2 cut(s)	457, 1235
PfoI	TCCNGGA	2 cut(s)	1021, 2305
PinAI	ACCGGT	1 cut(s)	1652
PleI	GAGTC	3 cut(s)	223, 1409, 1483
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	3 cut(s)	223, 1409, 1483
PpuMI	RGGWCCY	1 cut(s)	1318
PshBI	ATTAAT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	1397
Psp5II	RGGWCCY	1 cut(s)	1318
Psp6I	CCWGG	6 cut(s)	909, 1577, 1728, 2305, 2326, 2396
PspFI	CCCAGC	1 cut(s)	2273
PspGI	CCWGG	6 cut(s)	909, 1577, 1728, 2305, 2326, 2396
PspN4I	GGNNCC	4 cut(s)	133, 387, 2214, 2260
PspPI	GGNCC	6 cut(s)	342, 693, 852, 1016, 1226, 1318
PspPPI	RGGWCCY	1 cut(s)	1318
PspXI	VCTCGAGB	1 cut(s)	1957
PsrI	GAACNNNNNNTAC	2 cut(s)	1251, 1283
PstI	CTGCAG	6 cut(s)	658, 685, 871, 1545, 2236, 2461
PstNI	CAGNNNCTG	2 cut(s)	653, 1279
PsuI	RGATCY	6 cut(s)	385, 1144, 1163, 1357, 1747, 1929
PteI	GCGCGC	1 cut(s)	1870
PvuII	CAGCTG	1 cut(s)	1718
RigI	GGCCGGCC	1 cut(s)	2505
RsaI	GTAC	5 cut(s)	464, 651, 945, 1669, 2126
RsaNI	GTAC	5 cut(s)	463, 650, 944, 1668, 2125
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	2 cut(s)	233, 1602
SaqAI	TTAA	9 cut(s)	20, 264, 435, 1299, 1688, 2117, 2385, 2442, 2515
Sau96I	GGNCC	6 cut(s)	342, 693, 852, 1016, 1226, 1318
ScaI	AGTACT	2 cut(s)	464, 1669
SchI	GAGTC	3 cut(s)	224, 1410, 1483
ScrFI	CCNGG	9 cut(s)	851, 911, 1023, 1579, 1730, 2307, 2328, 2362, 2398
SduI	GDGCHC	6 cut(s)	829, 1643, 1882, 2215, 2263, 2359
SfaNI	GCATC	6 cut(s)	235, 616, 735, 993, 1139, 1192
SfcI	CTRYAG	7 cut(s)	654, 681, 867, 1541, 2017, 2232, 2457
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	1957
SinI	GGWCC	4 cut(s)	693, 1016, 1226, 1318
SlaI	CTCGAG	1 cut(s)	1957
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	4 cut(s)	281, 815, 1837, 1957
SmoI	CTYRAG	4 cut(s)	281, 815, 1837, 1957
SphI	GCATGC	1 cut(s)	1451
SseBI	AGGCCT	2 cut(s)	1071, 1266
SsiI	CCGC	8 cut(s)	83, 112, 145, 165, 198, 219, 700, 2278
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	8 cut(s)	782, 792, 1155, 1346, 1355, 1616, 1884, 2264
StuI	AGGCCT	2 cut(s)	1071, 1266
StyD4I	CCNGG	9 cut(s)	849, 909, 1021, 1577, 1728, 2305, 2326, 2360, 2396
StyI	CCWWGG	2 cut(s)	103, 1012
TaaI	ACNGT	3 cut(s)	649, 673, 1667
TaiI	ACGT	1 cut(s)	1222
TaqI	TCGA	4 cut(s)	231, 1958, 2218, 2409
TaqII	GACCGA	1 cut(s)	579
TatI	WGTACW	2 cut(s)	462, 1667
TauI	GCSGC	2 cut(s)	114, 703
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	9 cut(s)	20, 264, 435, 1299, 1688, 2117, 2385, 2442, 2515
Tru9I	TTAA	9 cut(s)	20, 264, 435, 1299, 1688, 2117, 2385, 2442, 2515
TscAI	CASTG	5 cut(s)	1044, 1771, 1819, 1953, 2241
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	9 cut(s)	108, 185, 313, 931, 1085, 1127, 1540, 1715, 2051
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	9 cut(s)	17, 318, 850, 978, 1572, 2091, 2097, 2265, 2406
TspGWI	ACGGA	4 cut(s)	169, 219, 2060, 2271
TspRI	CASTG	5 cut(s)	1044, 1771, 1819, 1953, 2241
Van91I	CCANNNNNTGG	2 cut(s)	457, 1235
VpaK11BI	GGWCC	4 cut(s)	693, 1016, 1226, 1318
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	7 cut(s)	156, 394, 523, 857, 948, 1970, 2190
XceI	RCATGY	2 cut(s)	1451, 1878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XhoI	CTCGAG	1 cut(s)	1957
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	8 cut(s)	782, 792, 1155, 1346, 1355, 1616, 1884, 2264
ZrmI	AGTACT	2 cut(s)	464, 1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.