Rmu_sc0001844.1_g000028

ATP-dependent zinc metalloprotease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001844.1
Physical Location & Seq
Forward (+)
150425 .. 154404
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001844.1_g000028.1.cds

Sequence Viewer

Length: 1116 bp
atgaaatccctactggtcttaaacccacttcccttgagccctaaaacccttgctctccaattcccacgtccttcaattaccaaccatggctgctctttcagaaccataaagcacggcgccatttctctcaggcagctcagaattctctccgctgcttccaactcagttgcagctttcgctaacgccgacgaagaagccgagtccgctcagctctttgagaaattgaaggatgcagagagacaaaggataaatgagttggaagaacttgagaagaaggcaaatatacagttagagaggcagcttgtcatggcttcatattggagcagggccttattgactatgcgtggcaagttaagggggacagagtgggatcctgaaaattcacataggattaattttagtgactttttgagactgcttaactcaaacaatgtccagtttatggagtattcaaactatggtcaaacaatatcagtgatcctaccttactacaaagatgagaaaatgggaggagtggatgggaattcaaaaaaggaaattatttttaggcgtcacgtggttgaccgaatgccaatagattgttggaatgatgtttggcagaagttgcatcagcaaatagtaaatgttgaagtttataatgtggatacagtacctgcagaagtctattctactgttgcaactgcagtcatatggtccatgcggcttgccttgtctattgtattatatctgtggattgataatatgatgagaccgatttatgcgaagttgataccttctgatttaggaactcctagcaaaaaaaccagacaaccactcaagcgccgtgcccttggatcattaggaaagagccgggccaaatttatatctgcagaagaatctactgggattacctttgatgattttgctggccaggagtatataaagagggagctgcaagagattgtacggattttaaagaatgatgaagagtttcaggacaaaggcatctattgcccgaaaggtgtacttctccatggacctccgggaactggtaaaacactgctggctaaagctattgctggtgaagcaggcctgccattctttgcagcaaatggcactgattttgtagaggtatga

Protein Analysis

371

Amino Acids

41.98

Weight (kDa)

8.9

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 3 cut(s) 150, 204, 700
AclWI GGATC 4 cut(s) 365, 378, 472, 841
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 4 cut(s) 141, 379, 523, 857
AcvI CACGTG 1 cut(s) 556
AcyI GRCGYC 2 cut(s) 117, 550
AfaI GTAC 3 cut(s) 651, 945, 1005
AfiI CCNNNNNNNGG 2 cut(s) 442, 1028
AgsI TTSAA 5 cut(s) 75, 226, 453, 528, 629
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 909
AluBI AGCT 6 cut(s) 136, 173, 211, 301, 931, 1052
AluI AGCT 6 cut(s) 136, 173, 211, 301, 931, 1052
Alw26I GTCTC 3 cut(s) 232, 406, 742
AlwI GGATC 4 cut(s) 365, 378, 472, 841
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 4 cut(s) 327, 852, 907, 1069
ApeKI GCWGC 7 cut(s) 90, 133, 152, 170, 298, 931, 1085
ApoI RAATTY 4 cut(s) 141, 379, 523, 857
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 2 cut(s) 119, 822
AspS9I GGNCC 4 cut(s) 327, 693, 852, 1016
AsuC2I CCSGG 2 cut(s) 851, 1023
AsuHPI GGTGA 1 cut(s) 1073
AvaII GGWCC 2 cut(s) 693, 1016
BaeGI GKGCMC 1 cut(s) 829
BalI TGGCCA 1 cut(s) 909
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 41
BbrPI CACGTG 1 cut(s) 556
BbvI GCAGC 7 cut(s) 77, 139, 145, 182, 310, 918, 1097
BccI CCATC 1 cut(s) 512
BceAI ACGGC 2 cut(s) 130, 807
BciT130I CCWGG 1 cut(s) 911
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 2 cut(s) 851, 1023
BcoDI GTCTC 3 cut(s) 232, 406, 742
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 3 cut(s) 654, 681, 867
BfoI RGCGCY 2 cut(s) 120, 823
BfuAI ACCTGC 1 cut(s) 661
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 8 cut(s) 91, 134, 153, 171, 299, 701, 932, 1086
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 8 cut(s) 92, 135, 154, 172, 300, 702, 933, 1087
Bme1390I CCNGG 3 cut(s) 851, 911, 1023
Bme18I GGWCC 2 cut(s) 693, 1016
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 327, 693, 852, 1016
BmiI GGNNCC 2 cut(s) 118, 372
BmrFI CCNGG 3 cut(s) 851, 911, 1023
BmrI ACTGGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 220, 616, 993
BmuI ACTGGG 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 3 cut(s) 55, 287, 800
BpuMI CCSGG 2 cut(s) 851, 1023
BsaAI YACGTR 1 cut(s) 556
BsaHI GRCGYC 2 cut(s) 117, 550
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 3 cut(s) 85, 829, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1028
Bse1I ACTGG 4 cut(s) 18, 436, 886, 1033
BseBI CCWGG 1 cut(s) 911
BseDI CCNNGG 3 cut(s) 85, 829, 1012
BseGI GGATG 2 cut(s) 235, 523
BseLI CCNNNNNNNGG 2 cut(s) 442, 1028
BseMII CTCAG 4 cut(s) 142, 151, 177, 221
BseNI ACTGG 4 cut(s) 18, 436, 886, 1033
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 7 cut(s) 77, 139, 145, 182, 310, 918, 1097
BshFI GGCC 4 cut(s) 329, 854, 909, 1071
BshNI GGYRCC 1 cut(s) 116
BsiSI CCGG 2 cut(s) 850, 1022
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 442, 1028
BsmAI GTCTC 3 cut(s) 232, 406, 742
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 4 cut(s) 329, 854, 909, 1071
Bso31I GGTCTC 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 41, 829
Bsp143I GATC 3 cut(s) 370, 477, 833
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp19I CCATGG 2 cut(s) 85, 1012
BspACI CCGC 3 cut(s) 150, 204, 700
BspANI GGCC 4 cut(s) 329, 854, 909, 1071
BspCNI CTCAG 4 cut(s) 141, 150, 176, 220
BspLI GGNNCC 2 cut(s) 118, 372
BspMAI CTGCAG 3 cut(s) 658, 685, 871
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 4 cut(s) 365, 378, 472, 841
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 742
BsrBI CCGCTC 1 cut(s) 206
BsrI ACTGG 4 cut(s) 18, 436, 886, 1033
BssECI CCNNGG 3 cut(s) 85, 829, 1012
BssMI GATC 3 cut(s) 370, 477, 833
BssNI GRCGYC 2 cut(s) 117, 550
BssT1I CCWWGG 3 cut(s) 85, 829, 1012
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 3 cut(s) 288, 649, 673
Bst6I CTCTTC 1 cut(s) 960
BstACI GRCGYC 2 cut(s) 117, 550
BstAPI GCANNNNNTGC 2 cut(s) 604, 990
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 5 cut(s) 705, 907, 1044, 1069, 1073
BstDEI CTNAG 4 cut(s) 128, 137, 163, 207
BstDSI CCRYGG 2 cut(s) 85, 1012
BstF5I GGATG 2 cut(s) 235, 523
BstH2I RGCGCY 2 cut(s) 120, 823
BstHHI GCGC 2 cut(s) 119, 822
BstKTI GATC 3 cut(s) 373, 480, 836
BstMAI GTCTC 3 cut(s) 232, 406, 742
BstMBI GATC 3 cut(s) 370, 477, 833
BstMWI GCNNNNNNNGC 5 cut(s) 176, 203, 604, 990, 1064
BstNI CCWGG 1 cut(s) 911
BstSCI CCNGG 3 cut(s) 849, 909, 1021
BstSFI CTRYAG 3 cut(s) 654, 681, 867
BstSLI GKGCMC 1 cut(s) 829
BstV1I GCAGC 7 cut(s) 77, 139, 145, 182, 310, 918, 1097
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 4 cut(s) 329, 854, 909, 1071
BtgI CCRYGG 2 cut(s) 85, 1012
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 235, 523
BtsI GCAGTG 1 cut(s) 1037
BtsIMutI CAGTG 3 cut(s) 480, 1037, 1095
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 5 cut(s) 705, 907, 1044, 1069, 1073
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 119, 822
Cfr13I GGNCC 4 cut(s) 327, 693, 852, 1016
CseI GACGC 1 cut(s) 539
Csp6I GTAC 3 cut(s) 650, 944, 1004
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 4 cut(s) 86, 307, 697, 1013
CviQI GTAC 3 cut(s) 650, 944, 1004
DdeI CTNAG 4 cut(s) 128, 137, 163, 207
DinI GGCGCC 1 cut(s) 118
DpnI GATC 3 cut(s) 372, 479, 835
DpnII GATC 3 cut(s) 370, 477, 833
DraI TTTAAA 1 cut(s) 954
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Eco130I CCWWGG 3 cut(s) 85, 829, 1012
Eco147I AGGCCT 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 742
Eco47I GGWCC 2 cut(s) 693, 1016
Eco72I CACGTG 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 2 cut(s) 141, 523
EcoRII CCWGG 1 cut(s) 909
EcoT14I CCWWGG 3 cut(s) 85, 829, 1012
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 3 cut(s) 85, 829, 1012
FaeI CATG 4 cut(s) 89, 310, 700, 1016
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 85, 306, 696, 1012
FauNDI CATATG 1 cut(s) 689
Fnu4HI GCNGC 8 cut(s) 91, 134, 153, 171, 299, 701, 932, 1086
FokI GGATG 2 cut(s) 242, 530
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 8 cut(s) 91, 134, 153, 171, 299, 701, 932, 1086
FspBI CTAG 1 cut(s) 792
GlaI GCGC 2 cut(s) 118, 821
GluI GCNGC 8 cut(s) 91, 134, 153, 171, 299, 701, 932, 1086
HaeII RGCGCY 2 cut(s) 120, 823
HaeIII GGCC 4 cut(s) 329, 854, 909, 1071
HapII CCGG 2 cut(s) 850, 1022
HgaI GACGC 1 cut(s) 539
HhaI GCGC 2 cut(s) 119, 822
Hin1I GRCGYC 2 cut(s) 117, 550
Hin1II CATG 4 cut(s) 89, 310, 700, 1016
Hin6I GCGC 2 cut(s) 117, 820
HinP1I GCGC 2 cut(s) 117, 820
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 2 cut(s) 200, 875
HpaII CCGG 2 cut(s) 850, 1022
HphI GGTGA 1 cut(s) 1073
Hpy166II GTNNAC 2 cut(s) 562, 1004
Hpy188I TCNGA 3 cut(s) 101, 140, 778
Hpy188III TCNNGA 2 cut(s) 374, 974
Hpy8I GTNNAC 2 cut(s) 562, 1004
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 81, 220, 268, 783
HpyCH4III ACNGT 3 cut(s) 288, 649, 673
HpyCH4IV ACGT 2 cut(s) 67, 555
HpyCH4V TGCA 9 cut(s) 170, 233, 607, 656, 677, 683, 869, 934, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 203, 604, 990, 1064
HpyF3I CTNAG 4 cut(s) 128, 137, 163, 207
HpySE526I ACGT 2 cut(s) 67, 555
Hsp92I GRCGYC 2 cut(s) 117, 550
Hsp92II CATG 4 cut(s) 89, 310, 700, 1016
HspAI GCGC 2 cut(s) 117, 820
KasI GGCGCC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 370, 477, 833
LmnI GCTCC 2 cut(s) 321, 928
Lsp1109I GCAGC 7 cut(s) 77, 139, 145, 182, 310, 918, 1097
LweI GCATC 3 cut(s) 220, 616, 993
MaeI CTAG 1 cut(s) 792
MaeII ACGT 2 cut(s) 67, 555
MaeIII GTNAC 2 cut(s) 401, 551
MalI GATC 3 cut(s) 372, 479, 835
MbiI CCGCTC 1 cut(s) 206
MboI GATC 3 cut(s) 370, 477, 833
MboII GAAGA 5 cut(s) 203, 272, 283, 884, 977
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 41, 829
MlsI TGGCCA 1 cut(s) 909
MluCI AATT 9 cut(s) 59, 75, 141, 221, 379, 394, 523, 537, 857
MluNI TGGCCA 1 cut(s) 909
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 183, 237, 563
MnlI CCTC 5 cut(s) 288, 503, 918, 1029, 1102
Mox20I TGGCCA 1 cut(s) 909
MroXI GAANNNNTTC 1 cut(s) 969
MscI TGGCCA 1 cut(s) 909
MseI TTAA 5 cut(s) 20, 353, 393, 420, 953
Msp20I TGGCCA 1 cut(s) 909
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 850, 1022
MspR9I CCNGG 3 cut(s) 851, 911, 1023
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 911
MwoI GCNNNNNNNGC 5 cut(s) 176, 203, 604, 990, 1064
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 2 cut(s) 851, 1023
NcoI CCATGG 2 cut(s) 85, 1012
NdeI CATATG 1 cut(s) 689
NdeII GATC 3 cut(s) 370, 477, 833
NlaIII CATG 4 cut(s) 89, 310, 700, 1016
NlaIV GGNNCC 2 cut(s) 118, 372
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 401, 551
PceI AGGCCT 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 195
PctI GAATGC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 1 cut(s) 875
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 8 cut(s) 92, 135, 154, 172, 300, 702, 933, 1087
PleI GAGTC 1 cut(s) 208
PluTI GGCGCC 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 556
PmlI CACGTG 1 cut(s) 556
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 393
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 909
PspCI CACGTG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 2 cut(s) 118, 372
PspPI GGNCC 4 cut(s) 327, 693, 852, 1016
PstI CTGCAG 3 cut(s) 658, 685, 871
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 3 cut(s) 651, 945, 1005
RsaNI GTAC 3 cut(s) 650, 944, 1004
SaqAI TTAA 5 cut(s) 20, 353, 393, 420, 953
SatI GCNGC 8 cut(s) 91, 134, 153, 171, 299, 701, 932, 1086
Sau3AI GATC 3 cut(s) 370, 477, 833
Sau96I GGNCC 4 cut(s) 327, 693, 852, 1016
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 851, 911, 1023
SduI GDGCHC 2 cut(s) 41, 829
SfaNI GCATC 3 cut(s) 220, 616, 993
SfcI CTRYAG 3 cut(s) 654, 681, 867
SfoI GGCGCC 1 cut(s) 118
SinI GGWCC 2 cut(s) 693, 1016
SmlI CTYRAG 3 cut(s) 34, 266, 815
SmoI CTYRAG 3 cut(s) 34, 266, 815
Sse9I AATT 9 cut(s) 59, 75, 141, 221, 379, 394, 523, 537, 857
SseBI AGGCCT 1 cut(s) 1071
SsiI CCGC 3 cut(s) 150, 204, 700
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 792
StuI AGGCCT 1 cut(s) 1071
StyD4I CCNGG 3 cut(s) 849, 909, 1021
StyI CCWWGG 3 cut(s) 85, 829, 1012
TaaI ACNGT 3 cut(s) 288, 649, 673
TaiI ACGT 2 cut(s) 70, 558
TaqII GACCGA 2 cut(s) 579, 766
TasI AATT 9 cut(s) 59, 75, 141, 221, 379, 394, 523, 537, 857
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 5 cut(s) 20, 353, 393, 420, 953
Tru9I TTAA 5 cut(s) 20, 353, 393, 420, 953
TscAI CASTG 3 cut(s) 480, 1044, 1102
TseFI GTSAC 2 cut(s) 401, 551
TseI GCWGC 7 cut(s) 90, 133, 152, 170, 298, 931, 1085
Tsp45I GTSAC 2 cut(s) 401, 551
TspDTI ATGAA 3 cut(s) 17, 303, 978
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 3 cut(s) 480, 1044, 1102
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 693, 1016
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 4 cut(s) 141, 379, 523, 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.