Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081184.1

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 494

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 317 bp

atgaagggtggcgcagaacgagaacaaggcctgcttcagatactgacagagatggatggattcaaagtagctacctcacaggtgctggttataggtgcaacaaataggctagatatcctagatcctgctctattgaggaagggtcgttttgacaagattataagagttggtttgccatcaaaggatggtagatatgccatattgaaggtgcatgcaaggaataaatttttccgttctgaagaggagaaggagactcttcttcaggaaattgcggaacttaccgaagattttactggagcagagctgcagaacatact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

5.86

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	3 cut(s)	20, 245, 258
AgsI	TTSAA	2 cut(s)	64, 205
AluBI	AGCT	2 cut(s)	71, 304
AluI	AGCT	2 cut(s)	71, 304
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	2 cut(s)	43, 85
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	4 cut(s)	46, 50, 179, 184
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	110, 119
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	61, 190
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	234, 261
BstC8I	GCNNGC	2 cut(s)	32, 213
BstF5I	GGATG	2 cut(s)	61, 190
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	61, 190
Cac8I	GCNNGC	2 cut(s)	32, 213
CaiI	CAGNNNCTG	2 cut(s)	43, 85
CfoI	GCGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	30, 71, 109, 304
CviKI_1	RGCY	4 cut(s)	30, 71, 109, 304
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	234, 261
EarI	CTCTTC	2 cut(s)	234, 261
Eco147I	AGGCCT	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	20, 245, 258
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	92, 161, 195, 200, 213, 314
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	68, 197
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	110, 119
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	2 cut(s)	60, 253
Hpy188I	TCNGA	2 cut(s)	39, 238
Hpy188III	TCNNGA	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	133, 199, 241
HpyCH4V	TGCA	4 cut(s)	98, 211, 215, 307
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	44, 65, 71, 138, 248, 279
Lsp1109I	GCAGC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	110, 119
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	248, 251, 251, 296
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	224, 267
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	85, 129, 235
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	215
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	2 cut(s)	43, 85
PsuI	RGATCY	1 cut(s)	121
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	247
SetI	ASST	6 cut(s)	73, 77, 84, 97, 210, 306
SfcI	CTRYAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	224, 267
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	2 cut(s)	110, 119
StuI	AGGCCT	1 cut(s)	30
TasI	AATT	2 cut(s)	224, 267
TfiI	GAWTC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	221
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	2 cut(s)	110, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.