Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Forward (+)

585314 .. 588500

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1006000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTTCATACTTTAGCAGGGCCATGTTGACTCTGCGTGGAAAGTTAAGGGGAACAGAGTGGGATCCTGAGAACTCACACAGGATTGGTTTTAGTGACTTTTGGAGACTCCTTAACTCAAATAATGTCCAGCATATGGAGTACTCAAACTATGGTAAAAAAATATCAGTGATTCTACCTTACTACAAGGATGAGAAAATGGAAGGAGCGAAAGGGAATTTGAAGGAGGTTATTTTTCGGCGTCATGTGGTTGACCGAATGCCAATATATAGCTGGAATGATGTATGGCAGAAGTTGCATCAGCAAATAGAGAATGTTGAGGTTCTGAATGTGGATATAGTACCTGCACAAGTATATTCTACTGTGGCAACTGCAGTCATATGGTCTATGCGGCTTGCGTTGTCTATTGTACTGTATCTCTGGATTGGCAACTTGACTGTTGAGAATAAGTCTCACATTGATGGGAGGAGGGATTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

161

Amino Acids

18.78

Weight (kDa)

9.12

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	136
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	59, 72
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	3 cut(s)	143, 342, 411
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	100, 456
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	64
BccI	CCATC	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	100, 456
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmcAI	AGTACT	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	100, 456
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	59, 72
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	364, 414, 439
BstACI	GRCGYC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	100, 456
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	3 cut(s)	142, 341, 410
CviAII	CATG	3 cut(s)	25, 245, 480
CviJI	RGCY	4 cut(s)	5, 23, 273, 394
CviKI_1	RGCY	4 cut(s)	5, 23, 273, 394
CviQI	GTAC	3 cut(s)	142, 341, 410
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
FaeI	CATG	3 cut(s)	28, 248, 483
FatI	CATG	3 cut(s)	24, 244, 479
FauNDI	CATATG	2 cut(s)	135, 380
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	28, 248, 483
HincII	GTYRAC	2 cut(s)	30, 253
HindII	GTYRAC	2 cut(s)	30, 253
HinfI	GANTC	3 cut(s)	31, 108, 172
Hpy166II	GTNNAC	2 cut(s)	30, 253
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	68, 421
Hpy8I	GTNNAC	2 cut(s)	30, 253
HpyAV	CCTTC	2 cut(s)	197, 217
HpyCH4III	ACNGT	3 cut(s)	364, 414, 439
HpyCH4V	TGCA	4 cut(s)	298, 347, 374, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	28, 248, 483
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	4, 67, 81, 143, 259, 357, 406
LweI	GCATC	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	25, 102
MnlI	CCTC	4 cut(s)	220, 313, 459, 462
MseI	TTAA	2 cut(s)	47, 114
MslI	CAYNNNNRTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeI	CATATG	2 cut(s)	135, 380
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	28, 248, 483
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	2 cut(s)	25, 102
PpsI	GAGTC	2 cut(s)	25, 102
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	143, 342, 411
RsaNI	GTAC	3 cut(s)	142, 341, 410
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	47, 114
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	21
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	2 cut(s)	25, 102
SetI	ASST	5 cut(s)	181, 231, 275, 324, 346
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	364, 414, 439
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	217
TatI	WGTACW	2 cut(s)	141, 409
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	47, 114
Tru9I	TTAA	2 cut(s)	47, 114
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.