Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Reverse (-)

33284234 .. 33300142

Gene Structure 15909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGAAATCCCTACTGGTCTTAAACCCACTTCCCTTGAGCCCTAAAACCCTTGCTCTCCAATTCCCAAATCCTTCAATTACCAACCGTTTCAGAACCATAAAGCACGGCGCCATTTCTCTCAGGCAGCTCAGAATTCGCTCCGCTGCTTCCAACTCAGTTGCAGCTTTCGCTAACGCCGACGAAGAAGCCGAGTCCGCTCAGCTCTTTGAGAAATTGAAGGATGCAGAGAGACAAAGGATAAATGAGTTGGAAGAACTTGAGAAGAAGGCAAATATACAGTTAGAGAGGCAGCTTGTCATGGCTTCATATTGGAGCAGGGCCTTATTGACTATGCGTGGCAAGTTAAGGGGGACAGAGTGGGATCCTGAAAATTCACATAGGATTAATTTTAGTGACTTTTTGAGACTGCTTAACTCAAACAATGTCCAGTTTATGGAGTATTCAAACTATGGTCAAACAATATCAGTGATCCTACCTTACTACAAAGATGAGAAAATGGGAGGAGTGGATGGGAATTCAAAAAAGGAAATTATTTTTAGGCGTCACGTGGTTGACCGAATGCCAATAGATTGTTGGAATGATGTTTGGCAGAAGTTGCATCAGCAAATAGTAAATGTTGAAGTTTATAATGTGGATACAGTACCTGCAGAAGTCTATTCTACTGTTGCAACTGCAGTCATATGGTCCATGCGGCTTGCCTTGTCTATTGTATTGTATCTGTGGATTGATAACATGATGAGACCGATTTATGCGAAGTTGATACCTTCTGATTTAGGAACTCCTAGCAAAAAAACCAGGCAACCACTCAAGCGCCGTGCCCTTGGATCATTAGGAAAGAGCCGGGCCAAATTTATATCTGCAGAAGAATCTACTGGGATTACCTTTGATGATTTTGCTGGCCAGGAGTATATAAAGAGGGAGCTGCAAGAGATTGTACGGATTTTAAAGAATGATGAAGAGTTTCAGGACAAAGGCATCTATTGCCCAAAAGGTGTACTTCTCCATGGACCTCCTGGAACTGGTAAAACACTGCTGGCTAAAGCTATTGCTGGTGAAGCAGGCCTGCCATTCTTTGCAGCAAATGGCACTGATTTTGTAGAGATGTTTGTTGGTGTTGCAGCATCTCGTGTGAAGGATCTATTTGCTAGTGCCAGATCCTTCACACCCTCCATTATATTTATTGATGAGATAGATGCCATTGGTAGCAAGCGTGGTGGACCGGATATTGGTGGGGGTGGTGCAGAACGAGAACAAGGCCTGCTTCAGATACTGACAGAGATGGATGGATTTAAAGTAGCTACCTCACAGGTGCTGGTTATAGGTGCAACAAATAGGCTAGATATCCTAGATCCTGCTCTATTGAGGAAGGGTCGTTTTGACAAGATTATAAGAGTTGGTTTGCCATCAAAGGATGGTAGATATGCCATATTGAAGGTGCATGCAAGGAATAAATTTTTCCGTTCTGAAGAGGAGAAGGAGACTCTTCTTCAGGAAATTGCGGAACTTACAGAAGATTTTACTGGAGCAGAGCTGCAGAACATACTGAACGAAGCTGGTATTTTGACTGCCAGGAAAGACTTAGATTACATTGGACAAGAAGAGCTACTTGAGGCTTTGAAAAGGCAAAAGGGCACTTTTGAAACCGGCCAAGAAGACAGTACTGCAATGCCAGAAGAATTAAAACTGAGATTGGCGTATAGAGAAGCAGCTGTTGCTGTCCTGGCATGCTACTTTCCAGATCCATATCGTCCTTTTACTGAGACAGATATCAAATCCATTAATAGTCAGCCCAATATGCGCTACACTGAAATATCTGGCAAGGTCTTCTCAAGAAAATCAGATTTCGTAAACGCAATAGTGCGTGCATGTGCTCCTAGAGTAATTGAGGAGGAGATGTTTGGGGTTGACAATTTATGTTGGATCTCTGCAAAAGCTACATTGGAAGCCTCAAGGCGTGCAGAATTTCTGATTCTTCAGACAGGAATGACAGCATACGGGAAAGCATACTATAGAAATCAAAGTGATCTTGTGCCAAATCTTGCAGCTAAGCTTGAAGCACTTCGTGATGAATATATGCGTTATGCTGTTGACAAGTGTTCATCCGTGTTAAGGGAGTACCATTCAGCTGTAGAATCAATCACAGATATTTTACTTGACAAGGGAGAGATCAAAGCTGAGGAAATTTGGGACATATACAAAAGGGCTCCTCGAATACCTCAGCCTGCAGTGAATGTAGTTGATGAATACGGAGCCCTAGTTTATGCGGGGCGTTGGGGAATACATGGGATTACACTTCCGGGAAGAGTTACATTTTCACCTGGAAATGTTGGGTTTTCAACCTTTGGTGCACCCAGGCCTATGGAGACCCAAAGAGTCAATGATGAAACATGGGAGCTGATCGATAACATCTGGGATAAAAGGGTTCAAGAAATTAAAGCTGAAGCTTCCGCTGAGGTTGAAGAAGACAAAGAAAGGCCACAACTTTTGATGGCCAGCCATTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

835

Amino Acids

94.16

Weight (kDa)

5.98

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	294 - 400	1.6e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	332 - 466	2.2e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	496 - 536	1.4e-09	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 1388
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	6 cut(s)	141, 195, 691, 1499, 2264, 2448
AclWI	GGATC	9 cut(s)	356, 369, 463, 832, 1143, 1149, 1343, 1733, 1928
AcoI	YGGCCR	3 cut(s)	898, 1645, 2490
AcsI	RAATTY	7 cut(s)	132, 370, 514, 848, 1451, 1961, 2181
AcuI	CTGAAG	5 cut(s)	1247, 1472, 1485, 1958, 2460
AcvI	CACGTG	1 cut(s)	547
AcyI	GRCGYC	2 cut(s)	108, 541
AdeI	CACNNNGTG	1 cut(s)	2063
AfaI	GTAC	5 cut(s)	642, 936, 996, 1660, 2117
AfiI	CCNNNNNNNGG	4 cut(s)	433, 1019, 1226, 2109
AjnI	CCWGG	7 cut(s)	794, 900, 1012, 1568, 1719, 2317, 2351
Alw21I	GWGCWC	2 cut(s)	1873, 2350
Alw26I	GTCTC	6 cut(s)	223, 397, 733, 1472, 1754, 2357
Alw44I	GTGCAC	1 cut(s)	2346
AlwI	GGATC	9 cut(s)	356, 369, 463, 832, 1143, 1149, 1343, 1733, 1928
AlwNI	CAGNNNCTG	3 cut(s)	644, 1270, 1312
AoxI	GGCC	9 cut(s)	318, 843, 898, 1060, 1255, 1645, 2354, 2474, 2490
ApaLI	GTGCAC	1 cut(s)	2346
ApoI	RAATTY	7 cut(s)	132, 370, 514, 848, 1451, 1961, 2181
AseI	ATTAAT	2 cut(s)	384, 1779
Asp700I	GAANNNNTTC	2 cut(s)	960, 2058
AspLEI	GCGC	3 cut(s)	110, 813, 1800
AspS9I	GGNCC	5 cut(s)	318, 684, 843, 1007, 1217
AsuC2I	CCSGG	2 cut(s)	842, 2298
AsuHPI	GGTGA	2 cut(s)	1064, 2307
AvaII	GGWCC	3 cut(s)	684, 1007, 1217
BaeGI	GKGCMC	3 cut(s)	820, 1634, 2350
BalI	TGGCCA	2 cut(s)	900, 2492
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	3 cut(s)	41, 2206, 2254
BauI	CACGAG	1 cut(s)	1125
BbrPI	CACGTG	1 cut(s)	547
BbsI	GAAGAC	3 cut(s)	1659, 1816, 2469
Bbv12I	GWGCWC	2 cut(s)	1873, 2350
BbvCI	CCTCAGC	3 cut(s)	2175, 2217, 2451
BccI	CCATC	6 cut(s)	503, 1273, 1277, 1406, 1411, 2482
BceAI	ACGGC	2 cut(s)	121, 798
BciT130I	CCWGG	7 cut(s)	796, 902, 1014, 1570, 1721, 2319, 2353
BciVI	GTATCC	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	842, 2298
BcoDI	GTCTC	6 cut(s)	223, 397, 733, 1472, 1754, 2357
BfaI	CTAG	6 cut(s)	783, 1146, 1337, 1346, 1875, 2255
BfmI	CTRYAG	7 cut(s)	645, 672, 858, 1532, 2008, 2127, 2223
BfoI	RGCGCY	2 cut(s)	111, 814
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	628
BlpI	GCTNAGC	2 cut(s)	198, 2046
BmcAI	AGTACT	1 cut(s)	1660
Bme1390I	CCNGG	9 cut(s)	796, 842, 902, 1014, 1570, 1721, 2298, 2319, 2353
Bme18I	GGWCC	3 cut(s)	684, 1007, 1217
BmgT120I	GGNCC	5 cut(s)	318, 684, 843, 1007, 1217
BmiI	GGNNCC	4 cut(s)	109, 363, 2205, 2251
BmrFI	CCNGG	9 cut(s)	796, 842, 902, 1014, 1570, 1721, 2298, 2319, 2353
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	5 cut(s)	211, 607, 984, 1130, 1183
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	3 cut(s)	1659, 1816, 2469
BpmI	CTGGAG	1 cut(s)	1542
Bpu10I	CCTNAGC	3 cut(s)	2175, 2217, 2451
Bpu1102I	GCTNAGC	2 cut(s)	198, 2046
BpuEI	CTTGAG	6 cut(s)	55, 278, 791, 1628, 1813, 1933
BpuMI	CCSGG	2 cut(s)	842, 2298
Bsa29I	ATCGAT	1 cut(s)	2400
BsaAI	YACGTR	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	1743
BsaHI	GRCGYC	2 cut(s)	108, 541
BsaI	GGTCTC	2 cut(s)	733, 2357
BsaJI	CCNNGG	3 cut(s)	820, 1003, 2351
BsaWI	WCCGGW	1 cut(s)	1219
BsaXI	ACNNNNNCTCC	4 cut(s)	1880, 1910, 2241, 2271
Bsc4I	CCNNNNNNNGG	4 cut(s)	433, 1019, 1226, 2109
Bse118I	RCCGGY	1 cut(s)	1643
Bse1I	ACTGG	5 cut(s)	18, 427, 877, 1024, 1525
Bse3DI	GCAATG	1 cut(s)	1671
Bse8I	GATNNNNATC	1 cut(s)	1743
BseBI	CCWGG	7 cut(s)	796, 902, 1014, 1570, 1721, 2319, 2353
BseCI	ATCGAT	1 cut(s)	2400
BseDI	CCNNGG	3 cut(s)	820, 1003, 2351
BseGI	GGATG	5 cut(s)	226, 514, 1288, 1417, 2099
BseJI	GATNNNNATC	1 cut(s)	1743
BseLI	CCNNNNNNNGG	4 cut(s)	433, 1019, 1226, 2109
BseMI	GCAATG	1 cut(s)	1671
BseMII	CTCAG	9 cut(s)	133, 142, 168, 212, 1676, 1749, 2166, 2231, 2442
BseNI	ACTGG	5 cut(s)	18, 427, 877, 1024, 1525
BseRI	GAGGAG	5 cut(s)	516, 1484, 1901, 1904, 2196
BseSI	GKGCMC	3 cut(s)	820, 1634, 2350
BsgI	GTGCAG	2 cut(s)	1260, 1977
BshFI	GGCC	9 cut(s)	320, 845, 900, 1062, 1257, 1647, 2356, 2476, 2492
BshNI	GGYRCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	2400
BsiHKAI	GWGCWC	2 cut(s)	1873, 2350
BsiSI	CCGG	4 cut(s)	841, 1220, 1644, 2297
BslFI	GGGAC	2 cut(s)	364, 2201
BslI	CCNNNNNNNGG	4 cut(s)	433, 1019, 1226, 2109
BsmAI	GTCTC	6 cut(s)	223, 397, 733, 1472, 1754, 2357
BsmFI	GGGAC	2 cut(s)	364, 2201
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	9 cut(s)	320, 845, 900, 1062, 1257, 1647, 2356, 2476, 2492
Bso31I	GGTCTC	2 cut(s)	733, 2357
Bsp1286I	GDGCHC	7 cut(s)	41, 820, 1634, 1873, 2206, 2254, 2350
Bsp1720I	GCTNAGC	2 cut(s)	198, 2046
Bsp19I	CCATGG	1 cut(s)	1003
BspACI	CCGC	6 cut(s)	141, 195, 691, 1499, 2264, 2448
BspANI	GGCC	9 cut(s)	320, 845, 900, 1062, 1257, 1647, 2356, 2476, 2492
BspCNI	CTCAG	9 cut(s)	132, 141, 167, 211, 1677, 1750, 2167, 2230, 2443
BspDI	ATCGAT	1 cut(s)	2400
BspLI	GGNNCC	4 cut(s)	109, 363, 2205, 2251
BspMAI	CTGCAG	5 cut(s)	649, 676, 862, 1536, 2227
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	9 cut(s)	356, 369, 463, 832, 1143, 1149, 1343, 1733, 1928
BspQI	GCTCTTC	1 cut(s)	1593
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	2 cut(s)	733, 2357
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	1671
BsrFI	RCCGGY	1 cut(s)	1643
BsrI	ACTGG	5 cut(s)	18, 427, 877, 1024, 1525
BssAI	RCCGGY	1 cut(s)	1643
BssECI	CCNNGG	3 cut(s)	820, 1003, 2351
BssNI	GRCGYC	2 cut(s)	108, 541
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	2 cut(s)	820, 1003
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	7 cut(s)	796, 902, 1014, 1570, 1721, 2319, 2353
Bst4CI	ACNGT	5 cut(s)	86, 279, 640, 664, 1658
Bst6I	CTCTTC	5 cut(s)	951, 1461, 1488, 1593, 2296
BstACI	GRCGYC	2 cut(s)	108, 541
BstAPI	GCANNNNNTGC	3 cut(s)	595, 981, 1712
BstBAI	YACGTR	1 cut(s)	547
BstDSI	CCRYGG	1 cut(s)	1003
BstF5I	GGATG	5 cut(s)	226, 514, 1288, 1417, 2099
BstH2I	RGCGCY	2 cut(s)	111, 814
BstHHI	GCGC	3 cut(s)	110, 813, 1800
BstMAI	GTCTC	6 cut(s)	223, 397, 733, 1472, 1754, 2357
BstMWI	GCNNNNNNNGC	8 cut(s)	167, 194, 595, 981, 1055, 1712, 1721, 1795
BstNI	CCWGG	7 cut(s)	796, 902, 1014, 1570, 1721, 2319, 2353
BstNSI	RCATGY	3 cut(s)	1442, 1728, 1869
BstSCI	CCNGG	9 cut(s)	794, 840, 900, 1012, 1568, 1719, 2296, 2317, 2351
BstSFI	CTRYAG	7 cut(s)	645, 672, 858, 1532, 2008, 2127, 2223
BstSLI	GKGCMC	3 cut(s)	820, 1634, 2350
BstV2I	GAAGAC	3 cut(s)	1659, 1816, 2469
BstX2I	RGATCY	6 cut(s)	361, 1135, 1154, 1348, 1738, 1920
BstXI	CCANNNNNNTGG	1 cut(s)	2359
BstYI	RGATCY	6 cut(s)	361, 1135, 1154, 1348, 1738, 1920
Bsu15I	ATCGAT	1 cut(s)	2400
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	9 cut(s)	320, 845, 900, 1062, 1257, 1647, 2356, 2476, 2492
BsuTUI	ATCGAT	1 cut(s)	2400
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	5 cut(s)	226, 514, 1288, 1417, 2099
BtsI	GCAGTG	2 cut(s)	1028, 2232
BtsIMutI	CAGTG	5 cut(s)	471, 1028, 1086, 1803, 2232
BveI	ACCTGC	1 cut(s)	652
CaiI	CAGNNNCTG	3 cut(s)	644, 1270, 1312
CfoI	GCGC	3 cut(s)	110, 813, 1800
Cfr10I	RCCGGY	1 cut(s)	1643
Cfr13I	GGNCC	5 cut(s)	318, 684, 843, 1007, 1217
ClaI	ATCGAT	1 cut(s)	2400
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	5 cut(s)	641, 935, 995, 1659, 2116
CspCI	CAANNNNNGTGG	6 cut(s)	15, 50, 1195, 1230, 2466, 2501
CviAII	CATG	9 cut(s)	298, 688, 733, 1004, 1439, 1725, 1866, 2282, 2388
CviQI	GTAC	5 cut(s)	641, 935, 995, 1659, 2116
DinI	GGCGCC	1 cut(s)	109
DraI	TTTAAA	2 cut(s)	945, 1291
DraIII	CACNNNGTG	1 cut(s)	2063
EaeI	YGGCCR	3 cut(s)	898, 1645, 2490
Eam1104I	CTCTTC	5 cut(s)	951, 1461, 1488, 1593, 2296
EarI	CTCTTC	5 cut(s)	951, 1461, 1488, 1593, 2296
Eco130I	CCWWGG	2 cut(s)	820, 1003
Eco147I	AGGCCT	3 cut(s)	1062, 1257, 2356
Eco24I	GRGCYC	3 cut(s)	41, 2206, 2254
Eco31I	GGTCTC	2 cut(s)	733, 2357
Eco32I	GATATC	2 cut(s)	1342, 1768
Eco47I	GGWCC	3 cut(s)	684, 1007, 1217
Eco57I	CTGAAG	5 cut(s)	1247, 1472, 1485, 1958, 2460
Eco72I	CACGTG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRI	GAATTC	2 cut(s)	132, 514
EcoRII	CCWGG	7 cut(s)	794, 900, 1012, 1568, 1719, 2317, 2351
EcoRV	GATATC	2 cut(s)	1342, 1768
EcoT14I	CCWWGG	2 cut(s)	820, 1003
EcoT38I	GRGCYC	3 cut(s)	41, 2206, 2254
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	820, 1003
FaeI	CATG	9 cut(s)	301, 691, 736, 1007, 1442, 1728, 1869, 2285, 2391
FalI	AAGNNNNNCTT	6 cut(s)	981, 1013, 1245, 1277, 1590, 1622
FaqI	GGGAC	2 cut(s)	364, 2201
FatI	CATG	9 cut(s)	297, 687, 732, 1003, 1438, 1724, 1865, 2281, 2387
FauI	CCCGC	1 cut(s)	2257
FauNDI	CATATG	1 cut(s)	680
FokI	GGATG	5 cut(s)	233, 521, 1295, 1424, 2086
FriOI	GRGCYC	3 cut(s)	41, 2206, 2254
FspBI	CTAG	6 cut(s)	783, 1146, 1337, 1346, 1875, 2255
GlaI	GCGC	3 cut(s)	109, 812, 1799
GsuI	CTGGAG	1 cut(s)	1542
HaeII	RGCGCY	2 cut(s)	111, 814
HaeIII	GGCC	9 cut(s)	320, 845, 900, 1062, 1257, 1647, 2356, 2476, 2492
HapII	CCGG	4 cut(s)	841, 1220, 1644, 2297
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	3 cut(s)	110, 813, 1800
Hin1I	GRCGYC	2 cut(s)	108, 541
Hin1II	CATG	9 cut(s)	301, 691, 736, 1007, 1442, 1728, 1869, 2285, 2391
Hin6I	GCGC	3 cut(s)	108, 811, 1798
HinP1I	GCGC	3 cut(s)	108, 811, 1798
HincII	GTYRAC	3 cut(s)	553, 1906, 2089
HindII	GTYRAC	3 cut(s)	553, 1906, 2089
HindIII	AAGCTT	2 cut(s)	2048, 2442
HinfI	GANTC	6 cut(s)	191, 866, 1480, 1969, 2132, 2373
HpaII	CCGG	4 cut(s)	841, 1220, 1644, 2297
HphI	GGTGA	2 cut(s)	1064, 2307
Hpy166II	GTNNAC	7 cut(s)	553, 995, 1217, 1849, 1906, 2089, 2348
Hpy188I	TCNGA	8 cut(s)	92, 131, 769, 1266, 1465, 1840, 1968, 1977
Hpy188III	TCNNGA	7 cut(s)	365, 965, 1490, 1736, 1830, 2063, 2426
Hpy8I	GTNNAC	7 cut(s)	553, 995, 1217, 1849, 1906, 2089, 2348
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	9 cut(s)	81, 211, 259, 774, 1126, 1168, 1360, 1426, 1468
HpyCH4III	ACNGT	5 cut(s)	86, 279, 640, 664, 1658
HpyCH4IV	ACGT	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	8 cut(s)	167, 194, 595, 981, 1055, 1712, 1721, 1795
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	2 cut(s)	108, 541
Hsp92II	CATG	9 cut(s)	301, 691, 736, 1007, 1442, 1728, 1869, 2285, 2391
HspAI	GCGC	3 cut(s)	108, 811, 1798
KasI	GGCGCC	1 cut(s)	107
LguI	GCTCTTC	1 cut(s)	1593
LmnI	GCTCC	8 cut(s)	143, 312, 919, 1523, 1876, 2209, 2249, 2392
LweI	GCATC	5 cut(s)	211, 607, 984, 1130, 1183
MaeI	CTAG	6 cut(s)	783, 1146, 1337, 1346, 1875, 2255
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	392, 542, 2305
MbiI	CCGCTC	1 cut(s)	197
MflI	RGATCY	6 cut(s)	361, 1135, 1154, 1348, 1738, 1920
MhlI	GDGCHC	7 cut(s)	41, 820, 1634, 1873, 2206, 2254, 2350
MlsI	TGGCCA	2 cut(s)	900, 2492
MluNI	TGGCCA	2 cut(s)	900, 2492
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	200, 1474, 2382
MmeI	TCCRAC	4 cut(s)	174, 228, 554, 1898
Mox20I	TGGCCA	2 cut(s)	900, 2492
MroXI	GAANNNNTTC	2 cut(s)	960, 2058
MscI	TGGCCA	2 cut(s)	900, 2492
Msp20I	TGGCCA	2 cut(s)	900, 2492
MspA1I	CMGCKG	4 cut(s)	143, 1709, 2126, 2450
MspI	CCGG	4 cut(s)	841, 1220, 1644, 2297
MspR9I	CCNGG	9 cut(s)	796, 842, 902, 1014, 1570, 1721, 2298, 2319, 2353
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	7 cut(s)	796, 902, 1014, 1570, 1721, 2319, 2353
MwoI	GCNNNNNNNGC	8 cut(s)	167, 194, 595, 981, 1055, 1712, 1721, 1795
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	2 cut(s)	842, 2298
NcoI	CCATGG	1 cut(s)	1003
NdeI	CATATG	1 cut(s)	680
NlaIII	CATG	9 cut(s)	301, 691, 736, 1007, 1442, 1728, 1869, 2285, 2391
NlaIV	GGNNCC	4 cut(s)	109, 363, 2205, 2251
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	392, 542
NspI	RCATGY	3 cut(s)	1442, 1728, 1869
PaeI	GCATGC	2 cut(s)	1442, 1728
PceI	AGGCCT	3 cut(s)	1062, 1257, 2356
PciSI	GCTCTTC	1 cut(s)	1593
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 186
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	2 cut(s)	960, 2058
PfeI	GAWTC	3 cut(s)	866, 1969, 2132
PflMI	CCANNNNNTGG	1 cut(s)	433
PfoI	TCCNGGA	2 cut(s)	1012, 2296
PleI	GAGTC	3 cut(s)	199, 1474, 2381
PluTI	GGCGCC	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	3 cut(s)	199, 1474, 2381
Ppu21I	YACGTR	1 cut(s)	547
PshBI	ATTAAT	2 cut(s)	384, 1779
PsiI	TTATAA	2 cut(s)	627, 1388
Psp6I	CCWGG	7 cut(s)	794, 900, 1012, 1568, 1719, 2317, 2351
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	7 cut(s)	794, 900, 1012, 1568, 1719, 2317, 2351
PspN4I	GGNNCC	4 cut(s)	109, 363, 2205, 2251
PspPI	GGNCC	5 cut(s)	318, 684, 843, 1007, 1217
PstI	CTGCAG	5 cut(s)	649, 676, 862, 1536, 2227
PstNI	CAGNNNCTG	3 cut(s)	644, 1270, 1312
PsuI	RGATCY	6 cut(s)	361, 1135, 1154, 1348, 1738, 1920
PvuII	CAGCTG	2 cut(s)	1709, 2126
RsaI	GTAC	5 cut(s)	642, 936, 996, 1660, 2117
RsaNI	GTAC	5 cut(s)	641, 935, 995, 1659, 2116
SapI	GCTCTTC	1 cut(s)	1593
Sau96I	GGNCC	5 cut(s)	318, 684, 843, 1007, 1217
ScaI	AGTACT	1 cut(s)	1660
SchI	GAGTC	3 cut(s)	200, 1474, 2382
ScrFI	CCNGG	9 cut(s)	796, 842, 902, 1014, 1570, 1721, 2298, 2319, 2353
SduI	GDGCHC	7 cut(s)	41, 820, 1634, 1873, 2206, 2254, 2350
SfaNI	GCATC	5 cut(s)	211, 607, 984, 1130, 1183
SfcI	CTRYAG	7 cut(s)	645, 672, 858, 1532, 2008, 2127, 2223
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	3 cut(s)	684, 1007, 1217
SmlI	CTYRAG	6 cut(s)	34, 257, 806, 1607, 1828, 1948
SmoI	CTYRAG	6 cut(s)	34, 257, 806, 1607, 1828, 1948
SphI	GCATGC	2 cut(s)	1442, 1728
SseBI	AGGCCT	3 cut(s)	1062, 1257, 2356
SsiI	CCGC	6 cut(s)	141, 195, 691, 1499, 2264, 2448
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	6 cut(s)	783, 1146, 1337, 1346, 1875, 2255
StuI	AGGCCT	3 cut(s)	1062, 1257, 2356
StyD4I	CCNGG	9 cut(s)	794, 840, 900, 1012, 1568, 1719, 2296, 2317, 2351
StyI	CCWWGG	2 cut(s)	820, 1003
TaaI	ACNGT	5 cut(s)	86, 279, 640, 664, 1658
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	2209, 2400
TaqII	GACCGA	2 cut(s)	570, 757
TatI	WGTACW	2 cut(s)	994, 1658
TauI	GCSGC	1 cut(s)	694
TfiI	GAWTC	3 cut(s)	866, 1969, 2132
TscAI	CASTG	5 cut(s)	471, 1035, 1093, 1810, 2232
TseFI	GTSAC	2 cut(s)	392, 542
Tsp45I	GTSAC	2 cut(s)	392, 542
TspDTI	ATGAA	7 cut(s)	17, 294, 969, 2082, 2088, 2256, 2397
TspGWI	ACGGA	4 cut(s)	952, 1448, 2092, 2262
TspRI	CASTG	5 cut(s)	471, 1035, 1093, 1810, 2232
Van91I	CCANNNNNTGG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	2346
VpaK11BI	GGWCC	3 cut(s)	684, 1007, 1217
VspI	ATTAAT	2 cut(s)	384, 1779
XapI	RAATTY	7 cut(s)	132, 370, 514, 848, 1451, 1961, 2181
XceI	RCATGY	3 cut(s)	1442, 1728, 1869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	570, 1010
XmnI	GAANNNNTTC	2 cut(s)	960, 2058
XspI	CTAG	6 cut(s)	783, 1146, 1337, 1346, 1875, 2255
ZrmI	AGTACT	1 cut(s)	1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.