Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Reverse (-)

38185922 .. 38198887

Gene Structure 12966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGGATGCTGGACCTCTGGACAGTAAATTGAAGGATGCAGAGAGACAAAGGATAAATGAGTTGGAAGAACTTGAGAAGAAGGCAAATATACAGTTAGAGAGGCAGCTTGTCATGGCTTCATATTGGAGCAGGGCCTTATTGACTATGCGTGGCAAGTTAAGGGGGACAGAGTGGGATCCTGAAAATTCACATAGGATTAATTTTAGCGACTTTTTGAGACTGCTTAACTCAAACAATGTCCAGTTTATGGAGTATTCAAACTATGGTCAAACAATATCAGTGATCCTACCTTACTACAAAGATGAGAAAATGGGAGGAGTGGATGGGAATTCAAAAAAGGAAATTATTTTTAGGCGTCACGTGGTTGACCGAATGCCAATAGATTGTTGGAATGATGTTTGGCAGAAGTTGCATCAGCAAATAGTAAATGTTGAAGTTTATAATGTGGATACAGTACCTGCAGAAGTCTATTCTACTGTTGCAACTGCAGTCATATGGTCCATGCGGCTTGCCTTGTCTATTGTATTGTATCTGTGGATTGATAACATGATGAGACCGATTTATGCGAAGTTGATACCTTCTGATTTAGGAACTCCTAGCAAAAAAACCAGGCAACCACTCAAGCGCCGTGCCCTTGGATCATTAGGAAAGAGCCGGGCCAAATTTATATCTGCAGAAGAATCTACTGGGATTACCTTTGATGATTTTGCTGGCCAGGAGTATATAAAGAGGGAGCTGCAAGAGATTGTACGGATTTTAAAGAATGATGAAGAGTTTCAGGACAAAGGCATCTATTGCCCGAAAGGTGTACTTCTCCATGGACCTCCTGGAACTGGTAAAACACTGCTGGCTAAAGCTATTGCTGGTGAAGCAGGCCTGCCATTCTTTGCAGCAAATGGCACTGATTTTGTAGAGATGTTTGTTGGTGTTGCAGCATCTCGTGTGAAGGATCTATTTGCTAGTGCCAGATCCTTCACACCCTCCATTATATTTATTGATGAGATAGATGCCATTGGTAGCAAACGTGGTGGACCGGATATTGGTGGGGGTGGTGCAGAACGAGAACAAGGCCTGCTTCAGATACTGACAGAGATGGATGGATTTAAAGTAGCTACCTCACAGGTGCTGGTTATAGGTGCAACAAATAGGCTAGATATCCTAGATCCTGCTCTATTGAGGAAGGGTCGTTTTGACAAGATTATAAGAGTTGGTTTGCCATCAAAGGATGGTAGATATGCCATATTGAAGGTGCATGCAAGGAATAAATTTTTCCGTTCTGAAGAGGAGAAGGAGACTCTTCTTCAGGAAATTGCGGAACTTACAGAAGATTTTACTGGAGCAGAGCTGCAGAACATACTGAACGAAGCTGGTATTTTGACTGCCAGGAAAGACTTAGATTACATTGGACAAGAAGAGCTACTTGAGGCTTTGAAAAGGCAAAAGGGCACTTTTGAAACCGGCCAAGAAGACAGTACTGCAATGCCAGAAGAATTAAAACTGAGATTGGCGTATAGAGAAGCAGCTGTAGCTGTCCTGGCATGCTACTTTCCAGATCCATATCGTCCTTTTACTGAGACAGATATCAAATCCATTAATAGTCAGCCCAATATGCGCTACACTGAAATATCTGGCAAGGTCTTCTCAAGAAAATCAGATTTCGTAAACGCAATAGTGCGTGCATGTGCTCCTAGAGTAATTGAGGAGGAGATGTTTGGGGTTGACAATTTATGTTGGATCTCTGCAAAAGCTACATTGGAAGCCTCGAGGCGTGCAGAATTTCTGATTCTTCAGACAGGAATGACAGCATACGGGAAAGCATACTATAGAAATCAAAGTGATCTTGTGCCAAATCTTGCAGCTAAGCTTGAAGCACTTCGTGATGAATATATGCGTTATGCTGTTGAAAAGTGTTCATCCGTGTTAAGGGAGTACCATTCAGCTGTAGAAACAATCACAGATATTTTACTTGACAAGGGAGAGATCAAAGCTGAGGAAATTTGGGACATATACAAAAGGGCTCCTCGAATACCTCAGTCTGCAGTGAATGCAGTTGATGAATACGGAGCCCTAGTTTATGCGGGGCGTTGGGGAATACATGGGATTACACTTCCGGGAAGAGTTACATTTTCACCTGGAAATGTTGGGTTTTCAACCTTTGGTGCACCCAGGCCTATGGAGACCCAAAGAGTCAATGATGAAACATGGGAGCTGATCGATAACATCTGGGATAAAAGGGTTCAAGAAATTAAAGCTGAAGCTTCCGCTGAGGTTGAAGAAGACAAAGAAAGGCCACAACTTTTGATGGCCAGCCATTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

773

Amino Acids

87.3

Weight (kDa)

5.56

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	232 - 338	1.4e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	270 - 404	1.9e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	434 - 474	1.2e-09	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	441, 1202
AbsI	CCTCGAGG	1 cut(s)	1762
Acc36I	ACCTGC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	4 cut(s)	505, 1313, 2078, 2262
AclWI	GGATC	9 cut(s)	170, 183, 277, 646, 957, 963, 1157, 1547, 1742
AcoI	YGGCCR	3 cut(s)	712, 1459, 2304
AcsI	RAATTY	6 cut(s)	184, 328, 662, 1265, 1775, 1995
AcuI	CTGAAG	5 cut(s)	1061, 1286, 1299, 1772, 2274
AcvI	CACGTG	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	355
AdeI	CACNNNGTG	1 cut(s)	1877
AfaI	GTAC	5 cut(s)	456, 750, 810, 1474, 1931
AfiI	CCNNNNNNNGG	4 cut(s)	247, 833, 1040, 1923
AjnI	CCWGG	7 cut(s)	608, 714, 826, 1382, 1533, 2131, 2165
Alw21I	GWGCWC	2 cut(s)	1687, 2164
Alw26I	GTCTC	6 cut(s)	37, 211, 547, 1286, 1568, 2171
Alw44I	GTGCAC	1 cut(s)	2160
AlwI	GGATC	9 cut(s)	170, 183, 277, 646, 957, 963, 1157, 1547, 1742
AlwNI	CAGNNNCTG	3 cut(s)	458, 1084, 1126
Ama87I	CYCGRG	1 cut(s)	1762
AoxI	GGCC	9 cut(s)	132, 657, 712, 874, 1069, 1459, 2168, 2288, 2304
ApaLI	GTGCAC	1 cut(s)	2160
ApeKI	GCWGC	7 cut(s)	103, 736, 890, 932, 1345, 1520, 1856
ApoI	RAATTY	6 cut(s)	184, 328, 662, 1265, 1775, 1995
AseI	ATTAAT	2 cut(s)	198, 1593
Asp700I	GAANNNNTTC	2 cut(s)	774, 1872
AspLEI	GCGC	2 cut(s)	627, 1614
AspS9I	GGNCC	6 cut(s)	11, 132, 498, 657, 821, 1031
AsuC2I	CCSGG	2 cut(s)	656, 2112
AsuHPI	GGTGA	2 cut(s)	878, 2121
AvaI	CYCGRG	1 cut(s)	1762
AvaII	GGWCC	4 cut(s)	11, 498, 821, 1031
BaeGI	GKGCMC	3 cut(s)	634, 1448, 2164
BalI	TGGCCA	2 cut(s)	714, 2306
BamHI	GGATCC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	2020, 2068
BauI	CACGAG	1 cut(s)	939
BbrPI	CACGTG	1 cut(s)	361
BbsI	GAAGAC	3 cut(s)	1473, 1630, 2283
Bbv12I	GWGCWC	2 cut(s)	1687, 2164
BbvCI	CCTCAGC	2 cut(s)	1989, 2265
BbvI	GCAGC	7 cut(s)	115, 723, 902, 944, 1332, 1532, 1868
BccI	CCATC	6 cut(s)	317, 1087, 1091, 1220, 1225, 2296
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	7 cut(s)	610, 716, 828, 1384, 1535, 2133, 2167
BciVI	GTATCC	1 cut(s)	442
BcnI	CCSGG	2 cut(s)	656, 2112
BcoDI	GTCTC	6 cut(s)	37, 211, 547, 1286, 1568, 2171
BfaI	CTAG	6 cut(s)	597, 960, 1151, 1160, 1689, 2069
BfmI	CTRYAG	8 cut(s)	459, 486, 672, 1346, 1524, 1822, 1941, 2037
BfoI	RGCGCY	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	8 cut(s)	104, 506, 737, 891, 933, 1346, 1521, 1857
BlpI	GCTNAGC	1 cut(s)	1860
BlsI	GCNGC	8 cut(s)	105, 507, 738, 892, 934, 1347, 1522, 1858
BmcAI	AGTACT	1 cut(s)	1474
Bme1390I	CCNGG	9 cut(s)	610, 656, 716, 828, 1384, 1535, 2112, 2133, 2167
Bme18I	GGWCC	4 cut(s)	11, 498, 821, 1031
BmeT110I	CYCGRG	1 cut(s)	1762
BmgT120I	GGNCC	6 cut(s)	11, 132, 498, 657, 821, 1031
BmiI	GGNNCC	3 cut(s)	177, 2019, 2065
BmrFI	CCNGG	9 cut(s)	610, 656, 716, 828, 1384, 1535, 2112, 2133, 2167
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	5 cut(s)	25, 421, 798, 944, 997
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	3 cut(s)	1473, 1630, 2283
BpmI	CTGGAG	1 cut(s)	1356
Bpu10I	CCTNAGC	2 cut(s)	1989, 2265
Bpu1102I	GCTNAGC	1 cut(s)	1860
BpuEI	CTTGAG	4 cut(s)	92, 605, 1442, 1627
BpuMI	CCSGG	2 cut(s)	656, 2112
Bsa29I	ATCGAT	1 cut(s)	2214
BsaAI	YACGTR	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	1557
BsaHI	GRCGYC	1 cut(s)	355
BsaI	GGTCTC	2 cut(s)	547, 2171
BsaJI	CCNNGG	3 cut(s)	634, 817, 2165
BsaWI	WCCGGW	1 cut(s)	1033
BsaXI	ACNNNNNCTCC	4 cut(s)	1694, 1724, 2055, 2085
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 833, 1040, 1923
Bse118I	RCCGGY	1 cut(s)	1457
Bse1I	ACTGG	4 cut(s)	241, 691, 838, 1339
Bse3DI	GCAATG	1 cut(s)	1485
Bse8I	GATNNNNATC	1 cut(s)	1557
BseBI	CCWGG	7 cut(s)	610, 716, 828, 1384, 1535, 2133, 2167
BseCI	ATCGAT	1 cut(s)	2214
BseDI	CCNNGG	3 cut(s)	634, 817, 2165
BseGI	GGATG	6 cut(s)	10, 40, 328, 1102, 1231, 1913
BseJI	GATNNNNATC	1 cut(s)	1557
BseLI	CCNNNNNNNGG	4 cut(s)	247, 833, 1040, 1923
BseMI	GCAATG	1 cut(s)	1485
BseMII	CTCAG	5 cut(s)	1490, 1563, 1980, 2045, 2256
BseNI	ACTGG	4 cut(s)	241, 691, 838, 1339
BseRI	GAGGAG	5 cut(s)	330, 1298, 1715, 1718, 2010
BseSI	GKGCMC	3 cut(s)	634, 1448, 2164
BseXI	GCAGC	7 cut(s)	115, 723, 902, 944, 1332, 1532, 1868
BsgI	GTGCAG	2 cut(s)	1074, 1791
BshFI	GGCC	9 cut(s)	134, 659, 714, 876, 1071, 1461, 2170, 2290, 2306
BshVI	ATCGAT	1 cut(s)	2214
BsiHKAI	GWGCWC	2 cut(s)	1687, 2164
BsiHKCI	CYCGRG	1 cut(s)	1762
BsiSI	CCGG	4 cut(s)	655, 1034, 1458, 2111
BslFI	GGGAC	2 cut(s)	178, 2015
BslI	CCNNNNNNNGG	4 cut(s)	247, 833, 1040, 1923
BsmAI	GTCTC	6 cut(s)	37, 211, 547, 1286, 1568, 2171
BsmFI	GGGAC	2 cut(s)	178, 2015
BsmI	GAATGC	2 cut(s)	378, 2050
BsnI	GGCC	9 cut(s)	134, 659, 714, 876, 1071, 1461, 2170, 2290, 2306
Bso31I	GGTCTC	2 cut(s)	547, 2171
BsoBI	CYCGRG	1 cut(s)	1762
Bsp1286I	GDGCHC	6 cut(s)	634, 1448, 1687, 2020, 2068, 2164
Bsp1720I	GCTNAGC	1 cut(s)	1860
Bsp19I	CCATGG	1 cut(s)	817
BspACI	CCGC	4 cut(s)	505, 1313, 2078, 2262
BspANI	GGCC	9 cut(s)	134, 659, 714, 876, 1071, 1461, 2170, 2290, 2306
BspCNI	CTCAG	5 cut(s)	1491, 1564, 1981, 2044, 2257
BspDI	ATCGAT	1 cut(s)	2214
BspLI	GGNNCC	3 cut(s)	177, 2019, 2065
BspMAI	CTGCAG	5 cut(s)	463, 490, 676, 1350, 2041
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	9 cut(s)	170, 183, 277, 646, 957, 963, 1157, 1547, 1742
BspQI	GCTCTTC	1 cut(s)	1407
BspTNI	GGTCTC	2 cut(s)	547, 2171
BsrDI	GCAATG	1 cut(s)	1485
BsrFI	RCCGGY	1 cut(s)	1457
BsrI	ACTGG	4 cut(s)	241, 691, 838, 1339
BssAI	RCCGGY	1 cut(s)	1457
BssECI	CCNNGG	3 cut(s)	634, 817, 2165
BssNI	GRCGYC	1 cut(s)	355
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	2 cut(s)	634, 817
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	7 cut(s)	610, 716, 828, 1384, 1535, 2133, 2167
Bst4CI	ACNGT	5 cut(s)	23, 93, 454, 478, 1472
Bst6I	CTCTTC	5 cut(s)	765, 1275, 1302, 1407, 2110
BstACI	GRCGYC	1 cut(s)	355
BstAPI	GCANNNNNTGC	3 cut(s)	409, 795, 2045
BstBAI	YACGTR	1 cut(s)	361
BstDEI	CTNAG	7 cut(s)	1393, 1499, 1572, 1860, 1989, 2031, 2265
BstDSI	CCRYGG	1 cut(s)	817
BstF5I	GGATG	6 cut(s)	10, 40, 328, 1102, 1231, 1913
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	627, 1614
BstMAI	GTCTC	6 cut(s)	37, 211, 547, 1286, 1568, 2171
BstMWI	GCNNNNNNNGC	7 cut(s)	409, 795, 869, 1526, 1535, 1609, 2045
BstNI	CCWGG	7 cut(s)	610, 716, 828, 1384, 1535, 2133, 2167
BstNSI	RCATGY	3 cut(s)	1256, 1542, 1683
BstSCI	CCNGG	9 cut(s)	608, 654, 714, 826, 1382, 1533, 2110, 2131, 2165
BstSFI	CTRYAG	8 cut(s)	459, 486, 672, 1346, 1524, 1822, 1941, 2037
BstSLI	GKGCMC	3 cut(s)	634, 1448, 2164
BstV1I	GCAGC	7 cut(s)	115, 723, 902, 944, 1332, 1532, 1868
BstV2I	GAAGAC	3 cut(s)	1473, 1630, 2283
BstX2I	RGATCY	6 cut(s)	175, 949, 968, 1162, 1552, 1734
BstXI	CCANNNNNNTGG	1 cut(s)	2173
BstYI	RGATCY	6 cut(s)	175, 949, 968, 1162, 1552, 1734
Bsu15I	ATCGAT	1 cut(s)	2214
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	9 cut(s)	134, 659, 714, 876, 1071, 1461, 2170, 2290, 2306
BsuTUI	ATCGAT	1 cut(s)	2214
BtgI	CCRYGG	1 cut(s)	817
BtsCI	GGATG	6 cut(s)	10, 40, 328, 1102, 1231, 1913
BtsI	GCAGTG	2 cut(s)	842, 2046
BtsIMutI	CAGTG	5 cut(s)	285, 842, 900, 1617, 2046
BveI	ACCTGC	1 cut(s)	466
CaiI	CAGNNNCTG	3 cut(s)	458, 1084, 1126
CfoI	GCGC	2 cut(s)	627, 1614
Cfr10I	RCCGGY	1 cut(s)	1457
Cfr13I	GGNCC	6 cut(s)	11, 132, 498, 657, 821, 1031
ClaI	ATCGAT	1 cut(s)	2214
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	455, 749, 809, 1473, 1930
CspCI	CAANNNNNGTGG	4 cut(s)	1009, 1044, 2280, 2315
CviAII	CATG	9 cut(s)	112, 502, 547, 818, 1253, 1539, 1680, 2096, 2202
CviQI	GTAC	5 cut(s)	455, 749, 809, 1473, 1930
DdeI	CTNAG	7 cut(s)	1393, 1499, 1572, 1860, 1989, 2031, 2265
DraI	TTTAAA	2 cut(s)	759, 1105
DraIII	CACNNNGTG	1 cut(s)	1877
EaeI	YGGCCR	3 cut(s)	712, 1459, 2304
Eam1104I	CTCTTC	5 cut(s)	765, 1275, 1302, 1407, 2110
EarI	CTCTTC	5 cut(s)	765, 1275, 1302, 1407, 2110
Eco130I	CCWWGG	2 cut(s)	634, 817
Eco147I	AGGCCT	3 cut(s)	876, 1071, 2170
Eco24I	GRGCYC	2 cut(s)	2020, 2068
Eco31I	GGTCTC	2 cut(s)	547, 2171
Eco32I	GATATC	2 cut(s)	1156, 1582
Eco47I	GGWCC	4 cut(s)	11, 498, 821, 1031
Eco57I	CTGAAG	5 cut(s)	1061, 1286, 1299, 1772, 2274
Eco72I	CACGTG	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	1762
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	7 cut(s)	608, 714, 826, 1382, 1533, 2131, 2165
EcoRV	GATATC	2 cut(s)	1156, 1582
EcoT14I	CCWWGG	2 cut(s)	634, 817
EcoT38I	GRGCYC	2 cut(s)	2020, 2068
ErhI	CCWWGG	2 cut(s)	634, 817
FaeI	CATG	9 cut(s)	115, 505, 550, 821, 1256, 1542, 1683, 2099, 2205
FalI	AAGNNNNNCTT	6 cut(s)	795, 827, 1059, 1091, 1404, 1436
FaqI	GGGAC	2 cut(s)	178, 2015
FatI	CATG	9 cut(s)	111, 501, 546, 817, 1252, 1538, 1679, 2095, 2201
FauI	CCCGC	1 cut(s)	2071
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	8 cut(s)	104, 506, 737, 891, 933, 1346, 1521, 1857
FokI	GGATG	6 cut(s)	17, 47, 335, 1109, 1238, 1900
FriOI	GRGCYC	2 cut(s)	2020, 2068
Fsp4HI	GCNGC	8 cut(s)	104, 506, 737, 891, 933, 1346, 1521, 1857
FspBI	CTAG	6 cut(s)	597, 960, 1151, 1160, 1689, 2069
GlaI	GCGC	2 cut(s)	626, 1613
GluI	GCNGC	8 cut(s)	104, 506, 737, 891, 933, 1346, 1521, 1857
GsuI	CTGGAG	1 cut(s)	1356
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	9 cut(s)	134, 659, 714, 876, 1071, 1461, 2170, 2290, 2306
HapII	CCGG	4 cut(s)	655, 1034, 1458, 2111
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	627, 1614
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	9 cut(s)	115, 505, 550, 821, 1256, 1542, 1683, 2099, 2205
Hin6I	GCGC	2 cut(s)	625, 1612
HinP1I	GCGC	2 cut(s)	625, 1612
HincII	GTYRAC	2 cut(s)	367, 1720
HindII	GTYRAC	2 cut(s)	367, 1720
HindIII	AAGCTT	2 cut(s)	1862, 2256
HinfI	GANTC	4 cut(s)	680, 1294, 1783, 2187
HpaII	CCGG	4 cut(s)	655, 1034, 1458, 2111
HphI	GGTGA	2 cut(s)	878, 2121
Hpy166II	GTNNAC	6 cut(s)	367, 809, 1031, 1663, 1720, 2162
Hpy188I	TCNGA	6 cut(s)	583, 1080, 1279, 1654, 1782, 1791
Hpy188III	TCNNGA	8 cut(s)	17, 179, 779, 1304, 1550, 1644, 1877, 2240
Hpy8I	GTNNAC	6 cut(s)	367, 809, 1031, 1663, 1720, 2162
HpyAV	CCTTC	8 cut(s)	25, 73, 588, 940, 982, 1174, 1240, 1282
HpyCH4III	ACNGT	5 cut(s)	23, 93, 454, 478, 1472
HpyCH4IV	ACGT	2 cut(s)	360, 1024
HpyF10VI	GCNNNNNNNGC	7 cut(s)	409, 795, 869, 1526, 1535, 1609, 2045
HpyF3I	CTNAG	7 cut(s)	1393, 1499, 1572, 1860, 1989, 2031, 2265
HpySE526I	ACGT	2 cut(s)	360, 1024
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	9 cut(s)	115, 505, 550, 821, 1256, 1542, 1683, 2099, 2205
HspAI	GCGC	2 cut(s)	625, 1612
LguI	GCTCTTC	1 cut(s)	1407
LmnI	GCTCC	7 cut(s)	126, 733, 1337, 1690, 2023, 2063, 2206
Lsp1109I	GCAGC	7 cut(s)	115, 723, 902, 944, 1332, 1532, 1868
LweI	GCATC	5 cut(s)	25, 421, 798, 944, 997
MaeI	CTAG	6 cut(s)	597, 960, 1151, 1160, 1689, 2069
MaeII	ACGT	2 cut(s)	360, 1024
MaeIII	GTNAC	2 cut(s)	356, 2119
MflI	RGATCY	6 cut(s)	175, 949, 968, 1162, 1552, 1734
MhlI	GDGCHC	6 cut(s)	634, 1448, 1687, 2020, 2068, 2164
MlsI	TGGCCA	2 cut(s)	714, 2306
MluNI	TGGCCA	2 cut(s)	714, 2306
MlyI	GAGTC	2 cut(s)	1288, 2196
MmeI	TCCRAC	3 cut(s)	42, 368, 1712
Mox20I	TGGCCA	2 cut(s)	714, 2306
MroXI	GAANNNNTTC	2 cut(s)	774, 1872
MscI	TGGCCA	2 cut(s)	714, 2306
MseI	TTAA	9 cut(s)	158, 198, 225, 758, 1104, 1493, 1593, 1922, 2247
Msp20I	TGGCCA	2 cut(s)	714, 2306
MspA1I	CMGCKG	3 cut(s)	1523, 1940, 2264
MspI	CCGG	4 cut(s)	655, 1034, 1458, 2111
MspR9I	CCNGG	9 cut(s)	610, 656, 716, 828, 1384, 1535, 2112, 2133, 2167
Mva1269I	GAATGC	2 cut(s)	378, 2050
MvaI	CCWGG	7 cut(s)	610, 716, 828, 1384, 1535, 2133, 2167
MwoI	GCNNNNNNNGC	7 cut(s)	409, 795, 869, 1526, 1535, 1609, 2045
NciI	CCSGG	2 cut(s)	656, 2112
NcoI	CCATGG	1 cut(s)	817
NdeI	CATATG	1 cut(s)	494
NlaIII	CATG	9 cut(s)	115, 505, 550, 821, 1256, 1542, 1683, 2099, 2205
NlaIV	GGNNCC	3 cut(s)	177, 2019, 2065
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	3 cut(s)	1256, 1542, 1683
PaeI	GCATGC	2 cut(s)	1256, 1542
PaeR7I	CTCGAG	1 cut(s)	1762
PceI	AGGCCT	3 cut(s)	876, 1071, 2170
PciSI	GCTCTTC	1 cut(s)	1407
PctI	GAATGC	2 cut(s)	378, 2050
PdmI	GAANNNNTTC	2 cut(s)	774, 1872
PfeI	GAWTC	2 cut(s)	680, 1783
PflMI	CCANNNNNTGG	1 cut(s)	247
PfoI	TCCNGGA	2 cut(s)	826, 2110
PkrI	GCNGC	8 cut(s)	105, 507, 738, 892, 934, 1347, 1522, 1858
PleI	GAGTC	2 cut(s)	1288, 2195
PmaCI	CACGTG	1 cut(s)	361
PmlI	CACGTG	1 cut(s)	361
PpsI	GAGTC	2 cut(s)	1288, 2195
Ppu21I	YACGTR	1 cut(s)	361
PshBI	ATTAAT	2 cut(s)	198, 1593
PsiI	TTATAA	2 cut(s)	441, 1202
Psp6I	CCWGG	7 cut(s)	608, 714, 826, 1382, 1533, 2131, 2165
PspCI	CACGTG	1 cut(s)	361
PspGI	CCWGG	7 cut(s)	608, 714, 826, 1382, 1533, 2131, 2165
PspN4I	GGNNCC	3 cut(s)	177, 2019, 2065
PspPI	GGNCC	6 cut(s)	11, 132, 498, 657, 821, 1031
PspXI	VCTCGAGB	1 cut(s)	1762
PstI	CTGCAG	5 cut(s)	463, 490, 676, 1350, 2041
PstNI	CAGNNNCTG	3 cut(s)	458, 1084, 1126
PsuI	RGATCY	6 cut(s)	175, 949, 968, 1162, 1552, 1734
PvuII	CAGCTG	2 cut(s)	1523, 1940
RsaI	GTAC	5 cut(s)	456, 750, 810, 1474, 1931
RsaNI	GTAC	5 cut(s)	455, 749, 809, 1473, 1930
SapI	GCTCTTC	1 cut(s)	1407
SaqAI	TTAA	9 cut(s)	158, 198, 225, 758, 1104, 1493, 1593, 1922, 2247
SatI	GCNGC	8 cut(s)	104, 506, 737, 891, 933, 1346, 1521, 1857
Sau96I	GGNCC	6 cut(s)	11, 132, 498, 657, 821, 1031
ScaI	AGTACT	1 cut(s)	1474
SchI	GAGTC	2 cut(s)	1288, 2196
ScrFI	CCNGG	9 cut(s)	610, 656, 716, 828, 1384, 1535, 2112, 2133, 2167
SduI	GDGCHC	6 cut(s)	634, 1448, 1687, 2020, 2068, 2164
SfaNI	GCATC	5 cut(s)	25, 421, 798, 944, 997
SfcI	CTRYAG	8 cut(s)	459, 486, 672, 1346, 1524, 1822, 1941, 2037
Sfr274I	CTCGAG	1 cut(s)	1762
SinI	GGWCC	4 cut(s)	11, 498, 821, 1031
SlaI	CTCGAG	1 cut(s)	1762
SmlI	CTYRAG	5 cut(s)	71, 620, 1421, 1642, 1762
SmoI	CTYRAG	5 cut(s)	71, 620, 1421, 1642, 1762
SphI	GCATGC	2 cut(s)	1256, 1542
SseBI	AGGCCT	3 cut(s)	876, 1071, 2170
SsiI	CCGC	4 cut(s)	505, 1313, 2078, 2262
SspMI	CTAG	6 cut(s)	597, 960, 1151, 1160, 1689, 2069
StuI	AGGCCT	3 cut(s)	876, 1071, 2170
StyD4I	CCNGG	9 cut(s)	608, 654, 714, 826, 1382, 1533, 2110, 2131, 2165
StyI	CCWWGG	2 cut(s)	634, 817
TaaI	ACNGT	5 cut(s)	23, 93, 454, 478, 1472
TaiI	ACGT	2 cut(s)	363, 1027
TaqI	TCGA	3 cut(s)	1763, 2023, 2214
TaqII	GACCGA	2 cut(s)	384, 571
TatI	WGTACW	2 cut(s)	808, 1472
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	680, 1783
Tru1I	TTAA	9 cut(s)	158, 198, 225, 758, 1104, 1493, 1593, 1922, 2247
Tru9I	TTAA	9 cut(s)	158, 198, 225, 758, 1104, 1493, 1593, 1922, 2247
TscAI	CASTG	5 cut(s)	285, 849, 907, 1624, 2046
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	7 cut(s)	103, 736, 890, 932, 1345, 1520, 1856
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	6 cut(s)	108, 783, 1896, 1902, 2070, 2211
TspGWI	ACGGA	4 cut(s)	766, 1262, 1906, 2076
TspRI	CASTG	5 cut(s)	285, 849, 907, 1624, 2046
Van91I	CCANNNNNTGG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	2160
VpaK11BI	GGWCC	4 cut(s)	11, 498, 821, 1031
VspI	ATTAAT	2 cut(s)	198, 1593
XapI	RAATTY	6 cut(s)	184, 328, 662, 1265, 1775, 1995
XceI	RCATGY	3 cut(s)	1256, 1542, 1683
XcmI	CCANNNNNNNNNTGG	2 cut(s)	384, 824
XhoI	CTCGAG	1 cut(s)	1762
XmnI	GAANNNNTTC	2 cut(s)	774, 1872
XspI	CTAG	6 cut(s)	597, 960, 1151, 1160, 1689, 2069
ZrmI	AGTACT	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.