Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Reverse (-)

37044907 .. 37055288

Gene Structure 10382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1315900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGCTTCCCCCGCGGCTCAAATCAATGTCCTGTGCAGTTCGCGTGGTTCTTCAATCAAGACCCCCGATTTCACAACCCCTAAGACTTTGTTTTTAGGTCAGAGGCTGGGCCAAACGACGCCGTCCAATGGCTTTATCTTTATTAGCCGAAGAATCGACGGCGTTAGAAGAGTCGGGCCGCTTCGTATAGTCAACGAGAAAGTTGAAGTTGTCGATTTGGGGACGACGAACAACTCGGCCGTTGCGGCTTTTGAGAAACTGAAGGATGCTGAGAAAAAGAGGATAAATGACTTAGAAGAACTTGAGAACAAGGCAAATTTGCAGTTAGAGAGACAGCTTGTCATGGCTTCATACTGGAGCAGGTCCTTGTTGACTATGCGCGGAAAGTTAAGGGGAACAGAGTGGGATCCTGAGAACTCACACAGGATTGATTTTAGTGACTTTTGGAGACTCCTTAACTCAAATAAAGTCCAGTATATGGAGTACTCCAACTATGGTCAAACAATATCAGTGATTCTACCTTACTACAAAGATGAGAAAATGGAAGAAGCAAAAGGAAATTCTAAGGAGGTTATTTTTCGGCGTCATGTGGTTGACCGAATGCCAATAGATAGCTGGAATGATGTTTGGCAGAAGTTGCATCAGCAAATAGTGAATGTTGAGGTTCTGAATGTGGATACAGTACCCGCAGAAGTATATTCTACTGTGGCAACTGCAGTCATATGGTCTATGCGGCTTGCATTGTCCATTGTATTGTATCTCTGGATTGACAACTTGACGAGACCCATTTATGCAAAGTTAATACCATCTGATTTAGGAAGTCCTAGCAAAAAAACCAGGCAGCCACTCAAGCGCCGTGCGCTTGGATCATTAGGCAAGAGCCGGGCAAAATTTATATCAGCAGAAGAATCTACTGGTGTTACCTTTGATGATTTTGCTGGCCAGGAATATATAAAGCGGGAACTGCAGGAGATAGTACGAATTTTAAAGAACGATGAAGAGTTCCAAGATAAAGGCATCTATTGCCCAAAAGGCGTACTCCTTCATGGACCTCCTGGAACTGGAAAAACTCTGCTGGCTAAAGCTATTGCTGGCGAAGCAGGACTGCCTTTCTTTGCAGCAAACGGCACTGATTTTGTAGAGATGTTTGTAGGTGTTGCAGCATCACGTGTGAAGGATCTATTTGCTAGTTCCAGAAACTTCGCACCGTCCATTATATTTATTGATGAGATAGATGCCATTGGTAGCAAACGTGGTGGACCTGATATTGGTGGGGGTGGTGCAGAAAGGGAACAAGGTCTGCTTCAGATACTGACAGAGATGGATGGATTTAAAGTTTCTACTTCACAGGTGTTAGTCATAGGTGCAACAAATAGACTGGATATCCTTGATCCTGCTCTATTGAGAAAGGGCCGCTTTGACAAGATTATTAGAGTTGGTTTGCCATCAAAGGATGGTAGACTAGCCATACTGAAGGTGCATGCTAGAAATAAATTTTTCCGCTCTGAAGAGGAGAAGGAGGTTCTCCTTAATGAAATTGCTGAGCTTACTGAGGATTTTACCGGTGCAGAGTTGCAGAACATACTGAATGAAGCTGGAATTTTGACGGCAAGGAAGGACTTAGATTACATCGGACGGGAAGAGCTTCTAGAGGCTTTGAAACGGCAAAAGGGCACGTTTGAAACAGGTCAGGAAGATAGTTCCGAAATTCCAGAGGAACTGAAACTTAGATTGGCATATCGAGAAGCAGCTGTTGCTGTCCTTGCGTGCTACTTTCCTGATCCATACCGGCCTTTTGCTGAGACAGATATAAAATCCATTCGTAGTCAGCCAAATATGCGCTACACTGAAATACCGGGGAAGGTCTTCTCAAGAAAATCAGATTTTATAAACTCTATAGTGCGTGCATGTGCTCCTAGAGTTATTGAGGAGGAGATGTTTGGGGCTGACAACTTGTGTTGGATCTCTGCAAAGGCCACATTGGAGGCTTCAAGGCTTGCAGAATTTCTGATTCTACAAACAGGAATGACAGCTTATGGGAAAGCATACTACCGAAATCAAAATGATCTTGTGCCAAATCTTGCAGCCAAGCTTGAAGCACTTCGAGATGAATATATGCGTTATGCTGAGGACAAGTGTTTATCTGTATTAAGGGAGTACCATTCAACTGTAGAGACAATTACAGATATTTTACTTGACCATGGAGAGATTAAAGCTGAAGAAATTTGGGACATATATAAACGGTCTCCTCGAGTACCACAGCCTGAAGTGAACCCGGTTGATGAATATGGTGCCCTAATTTATGCGGGGAGGTGGGGAATTCATGGGATTACACTTCCTGGGAGAGTTACGTTTTCACCTGGGAATGCTGGATTTTCAACCTTTGGTGCACCCCGCCCTATGGAGGTATCTGAAGATTTATGCTTACTGGGACCCAAAGGGTCAATGATGAAACTTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

822

Amino Acids

92.03

Weight (kDa)

6.24

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	308 - 414	1.2e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	346 - 480	4.2e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	508 - 549	1.4e-09	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1889
Acc36I	ACCTGC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	2291
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccBSI	CCGCTC	1 cut(s)	1503
AccI	GTMKAC	1 cut(s)	1459
AccII	CGCG	3 cut(s)	14, 43, 381
AclWI	GGATC	7 cut(s)	401, 414, 874, 1185, 1385, 1775, 1970
AcoI	YGGCCR	2 cut(s)	237, 940
AcuI	CTGAAG	7 cut(s)	281, 1289, 1493, 1527, 2238, 2286, 2433
AcvI	CACGTG	1 cut(s)	1169
AcyI	GRCGYC	2 cut(s)	119, 583
AfaI	GTAC	6 cut(s)	485, 684, 978, 1038, 2159, 2256
AfiI	CCNNNNNNNGG	6 cut(s)	128, 478, 1061, 1268, 2401, 2404
AflIII	ACRYGT	1 cut(s)	1168
AgeI	ACCGGT	1 cut(s)	1562
AgsI	TTSAA	8 cut(s)	54, 206, 1660, 1682, 1992, 2096, 2166, 2379
AhdI	GACNNNNNGTC	1 cut(s)	338
AjnI	CCWGG	5 cut(s)	836, 942, 1054, 2338, 2359
AjuI	GAANNNNNNNTTGG	2 cut(s)	1715, 1747
Alw21I	GWGCWC	2 cut(s)	1915, 2392
Alw26I	GTCTC	6 cut(s)	325, 442, 775, 1796, 2168, 2250
Alw44I	GTGCAC	1 cut(s)	2388
AlwI	GGATC	7 cut(s)	401, 414, 874, 1185, 1385, 1775, 1970
AlwNI	CAGNNNCTG	2 cut(s)	106, 1312
Ama87I	CYCGRG	1 cut(s)	2250
AoxI	GGCC	7 cut(s)	109, 176, 237, 940, 1411, 1790, 1974
ApaLI	GTGCAC	1 cut(s)	2388
ApeKI	GCWGC	5 cut(s)	841, 1118, 1160, 1748, 2084
AsiGI	ACCGGT	1 cut(s)	1562
Asp700I	GAANNNNTTC	3 cut(s)	1644, 1865, 2100
AspLEI	GCGC	4 cut(s)	381, 855, 862, 1842
AspS9I	GGNCC	7 cut(s)	109, 176, 363, 1049, 1259, 1411, 2432
AsuC2I	CCSGG	3 cut(s)	884, 1857, 2276
AsuHPI	GGTGA	1 cut(s)	2349
AvaI	CYCGRG	1 cut(s)	2250
AvaII	GGWCC	4 cut(s)	363, 1049, 1259, 2432
BaeGI	GKGCMC	3 cut(s)	1676, 2296, 2392
BalI	TGGCCA	1 cut(s)	942
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	2291
BbrPI	CACGTG	1 cut(s)	1169
BbsI	GAAGAC	1 cut(s)	1858
Bbv12I	GWGCWC	2 cut(s)	1915, 2392
BbvCI	CCTCAGC	1 cut(s)	2127
BbvI	GCAGC	5 cut(s)	853, 1130, 1172, 1760, 2096
BccI	CCATC	5 cut(s)	814, 1315, 1319, 1448, 1453
BceAI	ACGGC	7 cut(s)	106, 175, 224, 840, 1141, 1623, 1679
BciT130I	CCWGG	5 cut(s)	838, 944, 1056, 2340, 2361
BciVI	GTATCC	1 cut(s)	670
BcnI	CCSGG	3 cut(s)	884, 1857, 2276
BcoDI	GTCTC	6 cut(s)	325, 442, 775, 1796, 2168, 2250
BfaI	CTAG	6 cut(s)	825, 1188, 1463, 1485, 1649, 1917
BfmI	CTRYAG	4 cut(s)	714, 965, 1896, 2169
BfoI	RGCGCY	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	670
BglI	GCCNNNNNGGC	2 cut(s)	245, 1032
BlpI	GCTNAGC	1 cut(s)	1542
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	8 cut(s)	838, 884, 944, 1056, 1857, 2276, 2340, 2361
Bme18I	GGWCC	4 cut(s)	363, 1049, 1259, 2432
BmeRI	GACNNNNNGTC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	2250
BmgT120I	GGNCC	7 cut(s)	109, 176, 363, 1049, 1259, 1411, 2432
BmiI	GGNNCC	4 cut(s)	408, 2293, 2433, 2434
BmrFI	CCNGG	8 cut(s)	838, 884, 944, 1056, 1857, 2276, 2340, 2361
BmrI	ACTGGG	1 cut(s)	2438
BmsI	GCATC	5 cut(s)	256, 649, 1026, 1172, 1225
BmuI	ACTGGG	1 cut(s)	2438
BpiI	GAAGAC	1 cut(s)	1858
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	2127
Bpu1102I	GCTNAGC	1 cut(s)	1542
BpuEI	CTTGAG	3 cut(s)	323, 833, 1855
BpuMI	CCSGG	3 cut(s)	884, 1857, 2276
BsaAI	YACGTR	1 cut(s)	1169
BsaHI	GRCGYC	2 cut(s)	119, 583
BsaI	GGTCTC	2 cut(s)	775, 2250
BsaJI	CCNNGG	5 cut(s)	12, 1856, 2200, 2339, 2360
BsaWI	WCCGGW	1 cut(s)	1562
BsaXI	ACNNNNNCTCC	2 cut(s)	1922, 1952
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 478, 1061, 1268, 2401, 2404
Bse118I	RCCGGY	2 cut(s)	1562, 1788
Bse1I	ACTGG	6 cut(s)	359, 472, 919, 1066, 1383, 2433
BseBI	CCWGG	5 cut(s)	838, 944, 1056, 2340, 2361
BseDI	CCNNGG	5 cut(s)	12, 1856, 2200, 2339, 2360
BseGI	GGATG	3 cut(s)	271, 1330, 1459
BseLI	CCNNNNNNNGG	6 cut(s)	128, 478, 1061, 1268, 2401, 2404
BseMII	CTCAG	6 cut(s)	261, 402, 1533, 1542, 1791, 2118
BseNI	ACTGG	6 cut(s)	359, 472, 919, 1066, 1383, 2433
BseRI	GAGGAG	4 cut(s)	1526, 1943, 1946, 2238
BseSI	GKGCMC	3 cut(s)	1676, 2296, 2392
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	853, 1130, 1172, 1760, 2096
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	3 cut(s)	55, 1302, 1587
Bsh1236I	CGCG	3 cut(s)	14, 43, 381
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	7 cut(s)	111, 178, 239, 942, 1413, 1792, 1976
BshNI	GGYRCC	1 cut(s)	2291
BshTI	ACCGGT	1 cut(s)	1562
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	1915, 2392
BsiHKCI	CYCGRG	1 cut(s)	2250
BsiSI	CCGG	5 cut(s)	883, 1563, 1789, 1856, 2276
BslFI	GGGAC	3 cut(s)	235, 2243, 2445
BslI	CCNNNNNNNGG	6 cut(s)	128, 478, 1061, 1268, 2401, 2404
BsmAI	GTCTC	6 cut(s)	325, 442, 775, 1796, 2168, 2250
BsmFI	GGGAC	3 cut(s)	235, 2243, 2445
BsmI	GAATGC	2 cut(s)	606, 2371
BsnI	GGCC	7 cut(s)	111, 178, 239, 942, 1413, 1792, 1976
Bso31I	GGTCTC	2 cut(s)	775, 2250
BsoBI	CYCGRG	1 cut(s)	2250
Bsp1286I	GDGCHC	4 cut(s)	1676, 1915, 2296, 2392
Bsp143I	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
Bsp1720I	GCTNAGC	1 cut(s)	1542
Bsp19I	CCATGG	1 cut(s)	2200
BspANI	GGCC	7 cut(s)	111, 178, 239, 942, 1413, 1792, 1976
BspCNI	CTCAG	6 cut(s)	262, 403, 1534, 1543, 1792, 2119
BspFNI	CGCG	3 cut(s)	14, 43, 381
BspLI	GGNNCC	4 cut(s)	408, 2293, 2433, 2434
BspMAI	CTGCAG	2 cut(s)	718, 969
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	7 cut(s)	401, 414, 874, 1185, 1385, 1775, 1970
BspQI	GCTCTTC	1 cut(s)	1635
BspT107I	GGYRCC	1 cut(s)	2291
BspTNI	GGTCTC	2 cut(s)	775, 2250
BsrBI	CCGCTC	1 cut(s)	1503
BsrFI	RCCGGY	2 cut(s)	1562, 1788
BsrI	ACTGG	6 cut(s)	359, 472, 919, 1066, 1383, 2433
BssAI	RCCGGY	2 cut(s)	1562, 1788
BssECI	CCNNGG	5 cut(s)	12, 1856, 2200, 2339, 2360
BssMI	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
BssNI	GRCGYC	2 cut(s)	119, 583
BssT1I	CCWWGG	1 cut(s)	2200
Bst2UI	CCWGG	5 cut(s)	838, 944, 1056, 2340, 2361
Bst4CI	ACNGT	5 cut(s)	682, 706, 1209, 2170, 2244
Bst6I	CTCTTC	4 cut(s)	163, 993, 1503, 1635
BstACI	GRCGYC	2 cut(s)	119, 583
BstAPI	GCANNNNNTGC	3 cut(s)	637, 1023, 1754
BstBAI	YACGTR	1 cut(s)	1169
BstC8I	GCNNGC	8 cut(s)	738, 940, 1077, 1093, 1482, 1768, 1905, 1998
BstDSI	CCRYGG	2 cut(s)	12, 2200
BstF5I	GGATG	3 cut(s)	271, 1330, 1459
BstFNI	CGCG	3 cut(s)	14, 43, 381
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	4 cut(s)	381, 855, 862, 1842
BstKTI	GATC	7 cut(s)	409, 869, 1180, 1393, 1783, 1965, 2068
BstMAI	GTCTC	6 cut(s)	325, 442, 775, 1796, 2168, 2250
BstMBI	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
BstMCI	CGRYCG	1 cut(s)	240
BstNI	CCWGG	5 cut(s)	838, 944, 1056, 2340, 2361
BstNSI	RCATGY	2 cut(s)	1484, 1911
BstSCI	CCNGG	8 cut(s)	836, 882, 942, 1054, 1855, 2274, 2338, 2359
BstSFI	CTRYAG	4 cut(s)	714, 965, 1896, 2169
BstSLI	GKGCMC	3 cut(s)	1676, 2296, 2392
BstUI	CGCG	3 cut(s)	14, 43, 381
BstV1I	GCAGC	5 cut(s)	853, 1130, 1172, 1760, 2096
BstV2I	GAAGAC	1 cut(s)	1858
BstX2I	RGATCY	3 cut(s)	406, 1177, 1962
BstYI	RGATCY	3 cut(s)	406, 1177, 1962
BstZI	CGGCCG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	7 cut(s)	111, 178, 239, 942, 1413, 1792, 1976
BtgI	CCRYGG	2 cut(s)	12, 2200
BtsCI	GGATG	3 cut(s)	271, 1330, 1459
BtsIMutI	CAGTG	3 cut(s)	516, 1128, 1845
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	8 cut(s)	738, 940, 1077, 1093, 1482, 1768, 1905, 1998
CaiI	CAGNNNCTG	2 cut(s)	106, 1312
CfoI	GCGC	4 cut(s)	381, 855, 862, 1842
Cfr10I	RCCGGY	2 cut(s)	1562, 1788
Cfr13I	GGNCC	7 cut(s)	109, 176, 363, 1049, 1259, 1411, 2432
Cfr42I	CCGCGG	1 cut(s)	15
CseI	GACGC	2 cut(s)	127, 572
Csp6I	GTAC	6 cut(s)	484, 683, 977, 1037, 2158, 2255
CspAI	ACCGGT	1 cut(s)	1562
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviAII	CATG	7 cut(s)	343, 587, 1046, 1481, 1908, 2201, 2324
CviQI	GTAC	6 cut(s)	484, 683, 977, 1037, 2158, 2255
DpnI	GATC	7 cut(s)	408, 868, 1179, 1392, 1782, 1964, 2067
DpnII	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
DraI	TTTAAA	2 cut(s)	987, 1333
DriI	GACNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	237, 940
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	4 cut(s)	163, 993, 1503, 1635
Eam1105I	GACNNNNNGTC	1 cut(s)	338
EarI	CTCTTC	4 cut(s)	163, 993, 1503, 1635
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	2200
Eco31I	GGTCTC	2 cut(s)	775, 2250
Eco32I	GATATC	1 cut(s)	1384
Eco47I	GGWCC	4 cut(s)	363, 1049, 1259, 2432
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	7 cut(s)	281, 1289, 1493, 1527, 2238, 2286, 2433
Eco72I	CACGTG	1 cut(s)	1169
Eco88I	CYCGRG	1 cut(s)	2250
EcoO109I	RGGNCCY	2 cut(s)	363, 2432
EcoRI	GAATTC	1 cut(s)	2319
EcoRII	CCWGG	5 cut(s)	836, 942, 1054, 2338, 2359
EcoRV	GATATC	1 cut(s)	1384
EcoT14I	CCWWGG	1 cut(s)	2200
ErhI	CCWWGG	1 cut(s)	2200
FaeI	CATG	7 cut(s)	346, 590, 1049, 1484, 1911, 2204, 2327
FalI	AAGNNNNNCTT	4 cut(s)	1287, 1319, 1400, 1432
FaqI	GGGAC	3 cut(s)	235, 2243, 2445
FatI	CATG	7 cut(s)	342, 586, 1045, 1480, 1907, 2200, 2323
FauI	CCCGC	5 cut(s)	19, 694, 951, 2299, 2402
FauNDI	CATATG	1 cut(s)	722
FblI	GTMKAC	1 cut(s)	1459
FokI	GGATG	3 cut(s)	278, 1337, 1466
FspBI	CTAG	6 cut(s)	825, 1188, 1463, 1485, 1649, 1917
GlaI	GCGC	4 cut(s)	380, 854, 861, 1841
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	7 cut(s)	111, 178, 239, 942, 1413, 1792, 1976
HapII	CCGG	5 cut(s)	883, 1563, 1789, 1856, 2276
HgaI	GACGC	2 cut(s)	127, 572
HhaI	GCGC	4 cut(s)	381, 855, 862, 1842
Hin1I	GRCGYC	2 cut(s)	119, 583
Hin1II	CATG	7 cut(s)	346, 590, 1049, 1484, 1911, 2204, 2327
Hin6I	GCGC	4 cut(s)	379, 853, 860, 1840
HinP1I	GCGC	4 cut(s)	379, 853, 860, 1840
HincII	GTYRAC	3 cut(s)	193, 372, 595
HindII	GTYRAC	3 cut(s)	193, 372, 595
HindIII	AAGCTT	1 cut(s)	2090
HinfI	GANTC	6 cut(s)	153, 171, 450, 514, 908, 2011
HpaII	CCGG	5 cut(s)	883, 1563, 1789, 1856, 2276
HphI	GGTGA	1 cut(s)	2349
Hpy166II	GTNNAC	7 cut(s)	193, 372, 595, 1259, 1460, 2272, 2390
Hpy8I	GTNNAC	7 cut(s)	193, 372, 595, 1259, 1460, 2272, 2390
Hpy99I	CGWCG	3 cut(s)	121, 161, 229
HpyAV	CCTTC	7 cut(s)	256, 1052, 1168, 1468, 1510, 1609, 1855
HpyCH4III	ACNGT	5 cut(s)	682, 706, 1209, 2170, 2244
HpyCH4IV	ACGT	4 cut(s)	1168, 1252, 1676, 2351
HpySE526I	ACGT	4 cut(s)	1168, 1252, 1676, 2351
Hsp92I	GRCGYC	2 cut(s)	119, 583
Hsp92II	CATG	7 cut(s)	346, 590, 1049, 1484, 1911, 2204, 2327
HspAI	GCGC	4 cut(s)	379, 853, 860, 1840
KflI	GGGWCCC	1 cut(s)	2432
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
LguI	GCTCTTC	1 cut(s)	1635
LmnI	GCTCC	2 cut(s)	357, 1918
Lsp1109I	GCAGC	5 cut(s)	853, 1130, 1172, 1760, 2096
LweI	GCATC	5 cut(s)	256, 649, 1026, 1172, 1225
MaeI	CTAG	6 cut(s)	825, 1188, 1463, 1485, 1649, 1917
MaeII	ACGT	4 cut(s)	1168, 1252, 1676, 2351
MaeIII	GTNAC	3 cut(s)	437, 919, 2347
MalI	GATC	7 cut(s)	408, 868, 1179, 1392, 1782, 1964, 2067
MbiI	CCGCTC	1 cut(s)	1503
MboI	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
MflI	RGATCY	3 cut(s)	406, 1177, 1962
MhlI	GDGCHC	4 cut(s)	1676, 1915, 2296, 2392
MlsI	TGGCCA	1 cut(s)	942
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	2 cut(s)	180, 444
MmeI	TCCRAC	2 cut(s)	513, 1940
Mox20I	TGGCCA	1 cut(s)	942
MroXI	GAANNNNTTC	3 cut(s)	1644, 1865, 2100
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	8 cut(s)	389, 456, 800, 986, 1332, 1530, 2150, 2211
Msp20I	TGGCCA	1 cut(s)	942
MspA1I	CMGCKG	2 cut(s)	14, 1751
MspI	CCGG	5 cut(s)	883, 1563, 1789, 1856, 2276
MspR9I	CCNGG	8 cut(s)	838, 884, 944, 1056, 1857, 2276, 2340, 2361
Mva1269I	GAATGC	2 cut(s)	606, 2371
MvaI	CCWGG	5 cut(s)	838, 944, 1056, 2340, 2361
MvnI	CGCG	3 cut(s)	14, 43, 381
NciI	CCSGG	3 cut(s)	884, 1857, 2276
NcoI	CCATGG	1 cut(s)	2200
NdeI	CATATG	1 cut(s)	722
NdeII	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
NlaIII	CATG	7 cut(s)	346, 590, 1049, 1484, 1911, 2204, 2327
NlaIV	GGNNCC	4 cut(s)	408, 2293, 2433, 2434
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	2 cut(s)	1484, 1911
PaeI	GCATGC	1 cut(s)	1484
PaeR7I	CTCGAG	1 cut(s)	2250
PciSI	GCTCTTC	1 cut(s)	1635
PcsI	WCGNNNNNNNCGW	1 cut(s)	2248
PctI	GAATGC	2 cut(s)	606, 2371
PdmI	GAANNNNTTC	3 cut(s)	1644, 1865, 2100
PfeI	GAWTC	4 cut(s)	153, 514, 908, 2011
PflFI	GACNNNGTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	1054
PinAI	ACCGGT	1 cut(s)	1562
PleI	GAGTC	2 cut(s)	179, 444
PmaCI	CACGTG	1 cut(s)	1169
PmlI	CACGTG	1 cut(s)	1169
PpsI	GAGTC	2 cut(s)	179, 444
Ppu21I	YACGTR	1 cut(s)	1169
PpuMI	RGGWCCY	2 cut(s)	363, 2432
PsiI	TTATAA	1 cut(s)	1889
Psp5II	RGGWCCY	2 cut(s)	363, 2432
Psp6I	CCWGG	5 cut(s)	836, 942, 1054, 2338, 2359
PspCI	CACGTG	1 cut(s)	1169
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	5 cut(s)	836, 942, 1054, 2338, 2359
PspN4I	GGNNCC	4 cut(s)	408, 2293, 2433, 2434
PspPI	GGNCC	7 cut(s)	109, 176, 363, 1049, 1259, 1411, 2432
PspPPI	RGGWCCY	2 cut(s)	363, 2432
PspXI	VCTCGAGB	1 cut(s)	2250
PstI	CTGCAG	2 cut(s)	718, 969
PstNI	CAGNNNCTG	2 cut(s)	106, 1312
PsuI	RGATCY	3 cut(s)	406, 1177, 1962
PsyI	GACNNNGTC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	1751
RsaI	GTAC	6 cut(s)	485, 684, 978, 1038, 2159, 2256
RsaNI	GTAC	6 cut(s)	484, 683, 977, 1037, 2158, 2255
SacII	CCGCGG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	1635
SaqAI	TTAA	8 cut(s)	389, 456, 800, 986, 1332, 1530, 2150, 2211
Sau3AI	GATC	7 cut(s)	406, 866, 1177, 1390, 1780, 1962, 2065
Sau96I	GGNCC	7 cut(s)	109, 176, 363, 1049, 1259, 1411, 2432
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	2 cut(s)	180, 444
ScrFI	CCNGG	8 cut(s)	838, 884, 944, 1056, 1857, 2276, 2340, 2361
SduI	GDGCHC	4 cut(s)	1676, 1915, 2296, 2392
SfaNI	GCATC	5 cut(s)	256, 649, 1026, 1172, 1225
SfcI	CTRYAG	4 cut(s)	714, 965, 1896, 2169
Sfr274I	CTCGAG	1 cut(s)	2250
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	4 cut(s)	363, 1049, 1259, 2432
SlaI	CTCGAG	1 cut(s)	2250
SmlI	CTYRAG	4 cut(s)	302, 848, 1870, 2250
SmoI	CTYRAG	4 cut(s)	302, 848, 1870, 2250
SphI	GCATGC	1 cut(s)	1484
SspMI	CTAG	6 cut(s)	825, 1188, 1463, 1485, 1649, 1917
StyD4I	CCNGG	8 cut(s)	836, 882, 942, 1054, 1855, 2274, 2338, 2359
StyI	CCWWGG	1 cut(s)	2200
TaaI	ACNGT	5 cut(s)	682, 706, 1209, 2170, 2244
TaiI	ACGT	4 cut(s)	1171, 1255, 1679, 2354
TaqI	TCGA	5 cut(s)	156, 213, 1741, 2104, 2251
TaqII	GACCGA	1 cut(s)	612
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	5 cut(s)	17, 181, 248, 736, 1416
TfiI	GAWTC	4 cut(s)	153, 514, 908, 2011
Tru1I	TTAA	8 cut(s)	389, 456, 800, 986, 1332, 1530, 2150, 2211
Tru9I	TTAA	8 cut(s)	389, 456, 800, 986, 1332, 1530, 2150, 2211
TscAI	CASTG	3 cut(s)	516, 1135, 1852
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	5 cut(s)	841, 1118, 1160, 1748, 2084
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	9 cut(s)	339, 1011, 1034, 1548, 1605, 2124, 2298, 2312, 2465
TspRI	CASTG	3 cut(s)	516, 1135, 1852
Tth111I	GACNNNGTC	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	2388
VpaK11BI	GGWCC	4 cut(s)	363, 1049, 1259, 2432
XbaI	TCTAGA	1 cut(s)	1648
XceI	RCATGY	2 cut(s)	1484, 1911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XhoI	CTCGAG	1 cut(s)	2250
XmiI	GTMKAC	1 cut(s)	1459
XmnI	GAANNNNTTC	3 cut(s)	1644, 1865, 2100
XspI	CTAG	6 cut(s)	825, 1188, 1463, 1485, 1649, 1917
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.