Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009339

Physical Location & Seq

Genomic Coordinates Forward (+)

17567639 .. 17571300

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGGGTGGTGCAGAAAGGGAACAAGGCCTGCTTCAGATACTAACAGAGATTGATGGATTTAAAGAGTTTACCTCACTGTATGTGTTAGTTATAGGTGCAACAAATAGATTAGATATCCTTGATCCTGCTCTATTGAGAAAGGGTCGCTTTGACAAGATTATAAGAGTTGGTTTGCCATCAAAGGGTGGTGGACTGGCCATATTAAAGGCGCATGCTAGAAATAAATTTTTTTGTTCTGAAGAGGAGAAGGAGGTTCTCCTTCAGGAAATTGCAGAGCTTACGGAGGATTTCATGGGTGCAGAGAATGAAGCTGGAATTTTGACTGCCAGGAAGGACTTAGATTTCATCGGACGAGAAGAGCTTCTGGAGGCTTCGAAAAGGCAAAGGGGCTCGTTTGAAACAGGTCAGGAAGATAAAGCAGCTGTTGCTGTCCTTACCTGCTACTTTCCTGACCCATACCACCCTTTCACTGAGACAGATATAAAATCCATTCGTAGTCAGCCAAATATGCGCTACACTGAAATATCAGGGAAGGTCTTCTCAAGAAAATCGGATTTTGTAAACTCTATAGTGTGTGCATGTCCTCCTAGAGTTATTGAGGAGGAGATGTTTGGAGTTGACAACTTGTGTTGGATCTCTCCAAAGGCCACATTAGAAGCTTCAAGGCTTGCAGAATTTCTTATTCTGCAGAAAGGAATGACAGCATATGGGAAAGCTTACTACAGGAATCAAAGTGATCTTGTGCCAAATCTTGCAGCCAAGCTTGAAGCACTTCGAGATGAATATCCTGCAGTGAAGCCGGTTGATGAATATGGAGCCCTAATTTACACTGGGAGATGGGGAATCCATGGGGTCACACTCCCCGGGAGAGTTACATTTTCACCTGGAAATGCTGGATTTTCAACCTTTGGCGCGCCTCGCCCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0022414 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055035 GO:0061458 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

311

Amino Acids

34.46

Weight (kDa)

5.66

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64580
fragaria_vesca	FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180 FvH4_1g24180
malus_domestica	MD02G1315900.v1.1 MD07G1006000.v1.1
prunus_persica	Prupe.1G190200_v2.0.a1 Prupe.2G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120571
rosa_laevigata	RLG00000018562
rosa_multiflora	Rmu_co8081184.1_g000001 Rmu_sc0001844.1_g000028 Rmu_sc0007380.1_g000017
rosa_roxburghii	Rroxscaffold_2G00123290
rosa_rugosa	Rorug02G0229500
rosa_samantha	Rh2AG285600 Rh2BG297200 Rh2CG274800 Rh2DG310900
rosa_wichuraiana	Rw2G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	449
AccII	CGCG	1 cut(s)	917
AclWI	GGATC	2 cut(s)	119, 644
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	227, 318, 677
AcuI	CTGAAG	3 cut(s)	20, 248, 261
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	401, 666, 770, 906
AjnI	CCWGG	2 cut(s)	329, 886
AluBI	AGCT	7 cut(s)	280, 314, 364, 425, 662, 719, 766
AluI	AGCT	7 cut(s)	280, 314, 364, 425, 662, 719, 766
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	119, 644
Ama87I	CYCGRG	1 cut(s)	866
AoxI	GGCC	3 cut(s)	28, 198, 648
ApeKI	GCWGC	2 cut(s)	422, 758
ApoI	RAATTY	3 cut(s)	227, 318, 677
AscI	GGCGCGCC	1 cut(s)	915
Asp700I	GAANNNNTTC	3 cut(s)	363, 539, 774
AspLEI	GCGC	4 cut(s)	214, 516, 917, 919
AsuC2I	CCSGG	2 cut(s)	867, 868
AsuHPI	GGTGA	1 cut(s)	876
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	866
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	395, 823
BbsI	GAAGAC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	434, 770
BccI	CCATC	3 cut(s)	50, 187, 834
BciT130I	CCWGG	2 cut(s)	331, 888
BcnI	CCSGG	2 cut(s)	867, 868
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	219, 591
BfmI	CTRYAG	4 cut(s)	570, 689, 724, 792
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	2 cut(s)	423, 759
BlsI	GCNGC	2 cut(s)	424, 760
Bme1390I	CCNGG	4 cut(s)	331, 867, 868, 888
BmeT110I	CYCGRG	1 cut(s)	866
BmiI	GGNNCC	1 cut(s)	820
BmrFI	CCNGG	4 cut(s)	331, 867, 868, 888
BmrI	ACTGGG	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	2 cut(s)	867, 868
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	850, 865, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	2 cut(s)	201, 838
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	331, 888
BseDI	CCNNGG	3 cut(s)	850, 865, 866
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	201, 838
BsePI	GCGCGC	1 cut(s)	915
BseRI	GAGGAG	3 cut(s)	260, 617, 620
BseXI	GCAGC	2 cut(s)	434, 770
BsgI	GTGCAG	2 cut(s)	33, 321
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	3 cut(s)	30, 200, 650
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	2 cut(s)	803, 867
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	30, 200, 650
BsoBI	CYCGRG	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	395, 823
Bsp143I	GATC	3 cut(s)	124, 636, 739
Bsp19I	CCATGG	1 cut(s)	850
BspANI	GGCC	3 cut(s)	30, 200, 650
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	917
BspLI	GGNNCC	1 cut(s)	820
BspMAI	CTGCAG	2 cut(s)	693, 796
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	2 cut(s)	119, 644
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	2 cut(s)	201, 838
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	3 cut(s)	850, 865, 866
BssHII	GCGCGC	1 cut(s)	915
BssMI	GATC	3 cut(s)	124, 636, 739
BssT1I	CCWWGG	1 cut(s)	850
Bst2UI	CCWGG	2 cut(s)	331, 888
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	237, 354
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	32, 216, 672, 917
BstDEI	CTNAG	2 cut(s)	340, 474
BstDSI	CCRYGG	1 cut(s)	850
BstFNI	CGCG	1 cut(s)	917
BstHHI	GCGC	4 cut(s)	214, 516, 917, 919
BstKTI	GATC	3 cut(s)	127, 639, 742
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	124, 636, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 511, 921
BstNI	CCWGG	2 cut(s)	331, 888
BstNSI	RCATGY	2 cut(s)	218, 585
BstSCI	CCNGG	4 cut(s)	329, 865, 866, 886
BstSFI	CTRYAG	4 cut(s)	570, 689, 724, 792
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	2 cut(s)	434, 770
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	30, 200, 650
BtgI	CCRYGG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	5 cut(s)	77, 471, 519, 801, 831
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	4 cut(s)	32, 216, 672, 917
CfoI	GCGC	4 cut(s)	214, 516, 917, 919
Cfr10I	RCCGGY	1 cut(s)	802
Cfr9I	CCCGGG	1 cut(s)	866
CviAII	CATG	4 cut(s)	215, 295, 582, 851
DdeI	CTNAG	2 cut(s)	340, 474
DpnI	GATC	3 cut(s)	126, 638, 741
DpnII	GATC	3 cut(s)	124, 636, 739
DraI	TTTAAA	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	237, 354
EarI	CTCTTC	2 cut(s)	237, 354
Eco130I	CCWWGG	1 cut(s)	850
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	395, 823
Eco32I	GATATC	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	20, 248, 261
Eco88I	CYCGRG	1 cut(s)	866
EcoRII	CCWGG	2 cut(s)	329, 886
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	850
EcoT38I	GRGCYC	2 cut(s)	395, 823
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	4 cut(s)	218, 298, 585, 854
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 134, 166
FatI	CATG	4 cut(s)	214, 294, 581, 850
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	423, 759
FriOI	GRGCYC	2 cut(s)	395, 823
Fsp4HI	GCNGC	2 cut(s)	423, 759
FspBI	CTAG	2 cut(s)	219, 591
GlaI	GCGC	4 cut(s)	213, 515, 916, 918
GluI	GCNGC	2 cut(s)	423, 759
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	30, 200, 650
HapII	CCGG	2 cut(s)	803, 867
HhaI	GCGC	4 cut(s)	214, 516, 917, 919
Hin1II	CATG	4 cut(s)	218, 298, 585, 854
Hin6I	GCGC	4 cut(s)	212, 514, 915, 917
HinP1I	GCGC	4 cut(s)	212, 514, 915, 917
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	3 cut(s)	660, 717, 764
HinfI	GANTC	2 cut(s)	730, 846
HpaII	CCGG	2 cut(s)	803, 867
HphI	GGTGA	1 cut(s)	876
Hpy166II	GTNNAC	4 cut(s)	72, 194, 565, 622
Hpy188I	TCNGA	4 cut(s)	39, 241, 353, 556
Hpy188III	TCNNGA	6 cut(s)	266, 368, 410, 452, 546, 779
Hpy8I	GTNNAC	4 cut(s)	72, 194, 565, 622
HpyAV	CCTTC	4 cut(s)	244, 272, 328, 529
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	9 cut(s)	14, 101, 275, 302, 581, 674, 691, 758, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 511, 921
HpyF3I	CTNAG	2 cut(s)	340, 474
Hsp92II	CATG	4 cut(s)	218, 298, 585, 854
HspAI	GCGC	4 cut(s)	212, 514, 915, 917
Kzo9I	GATC	3 cut(s)	124, 636, 739
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	2 cut(s)	434, 770
MaeI	CTAG	2 cut(s)	219, 591
MaeIII	GTNAC	2 cut(s)	856, 874
MalI	GATC	3 cut(s)	126, 638, 741
MboI	GATC	3 cut(s)	124, 636, 739
MboII	GAAGA	4 cut(s)	254, 371, 425, 532
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	2 cut(s)	395, 823
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	227, 270, 318, 677, 825
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	9 cut(s)	85, 238, 247, 280, 364, 595, 597, 598, 930
Mox20I	TGGCCA	1 cut(s)	200
MroXI	GAANNNNTTC	3 cut(s)	363, 539, 774
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	63, 206
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	803, 867
MspR9I	CCNGG	4 cut(s)	331, 867, 868, 888
MvaI	CCWGG	2 cut(s)	331, 888
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	3 cut(s)	428, 511, 921
NciI	CCSGG	2 cut(s)	867, 868
NcoI	CCATGG	1 cut(s)	850
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	124, 636, 739
NlaIII	CATG	4 cut(s)	218, 298, 585, 854
NlaIV	GGNNCC	1 cut(s)	820
NmuCI	GTSAC	1 cut(s)	856
NspI	RCATGY	2 cut(s)	218, 585
NspV	TTCGAA	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	218
PalAI	GGCGCGCC	1 cut(s)	915
PauI	GCGCGC	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	354
PdmI	GAANNNNTTC	3 cut(s)	363, 539, 774
PfeI	GAWTC	2 cut(s)	730, 846
PkrI	GCNGC	2 cut(s)	424, 760
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	329, 886
PspGI	CCWGG	2 cut(s)	329, 886
PspN4I	GGNNCC	1 cut(s)	820
PstI	CTGCAG	2 cut(s)	693, 796
PsuI	RGATCY	1 cut(s)	636
PteI	GCGCGC	1 cut(s)	915
PvuII	CAGCTG	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	63, 206
SatI	GCNGC	2 cut(s)	423, 759
Sau3AI	GATC	3 cut(s)	124, 636, 739
ScrFI	CCNGG	4 cut(s)	331, 867, 868, 888
SduI	GDGCHC	2 cut(s)	395, 823
SfcI	CTRYAG	4 cut(s)	570, 689, 724, 792
SfuI	TTCGAA	1 cut(s)	377
SgsI	GGCGCGCC	1 cut(s)	915
SmaI	CCCGGG	1 cut(s)	868
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	5 cut(s)	227, 270, 318, 677, 825
SseBI	AGGCCT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	219, 591
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	329, 865, 866, 886
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	377, 778
TasI	AATT	5 cut(s)	227, 270, 318, 677, 825
TfiI	GAWTC	2 cut(s)	730, 846
Tru1I	TTAA	2 cut(s)	63, 206
Tru9I	TTAA	2 cut(s)	63, 206
TscAI	CASTG	5 cut(s)	84, 478, 526, 801, 838
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	2 cut(s)	422, 758
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	6 cut(s)	17, 283, 324, 337, 798, 825
TspGWI	ACGGA	1 cut(s)	299
TspMI	CCCGGG	1 cut(s)	866
TspRI	CASTG	5 cut(s)	84, 478, 526, 801, 838
XapI	RAATTY	3 cut(s)	227, 318, 677
XceI	RCATGY	2 cut(s)	218, 585
XmaI	CCCGGG	1 cut(s)	866
XmnI	GAANNNNTTC	3 cut(s)	363, 539, 774
XspI	CTAG	2 cut(s)	219, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.