Rmu_sc0007380.1_g000017

ATP-dependent zinc metalloprotease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007380.1
Physical Location & Seq
Reverse (-)
62467 .. 69074
6608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007380.1_g000017.1.cds

Sequence Viewer

Length: 1407 bp
atgtttgttggtgttgcagcatctcgtgtgaaggatctatttgctagtgccaggtccttcacaccctccattatatttattgatgagatagatgccattggtagcaaacgtggtggaccggatattggtgggggtggcgcagaacgagaacaaggcctgcttcagatactgacagagatggatggattcaaagtagctacctcacaggtgctggttataggtgcaacaaataggctagatatcctagatcctgctctattgaggaagggtcgttttgacaagattataagagttggtttgccatcaaaggatggtagatatgccatattgaaggtgcatgcaaggaataaatttttccgttctgaagaggagaaggagactcttcttcaggaaattgcggaacttaccgaagattttactggagcagagctgcagaacatactgaacgaagctggtattttgactgccaggaaggacttagattacattggacgagaagagctactagaggctttgaaaaggcaaaagggcacttttgaaaccggccaagaagacagtactgcaatgccagaagaattaaaactgagattggcgtatagagaagcagctgttgctgtcctggcatgctactttccagatccatatcgtcctttcattgagacagatatcaaatccattaatagtcagcccaatatgcgctatactgaaatatctggcagggtcttctcaagaaaatcagatttcgtaaacgcaatagtgcgtgcatgtgctcctagagtaattgaggaggagatgtttggggttgacaatttgtgttggatctccgcaaaagctacattggaagcctcaaggcgtgcagaatttctgattcttcagacaggaatgacagcatacgggaaagcatactatagaaatcaaagtgatcttgtgccaaatcttgcagctaagcttgaagcacttcgtgatgaatatatgcgttatgctgttgacaagtgttcatccgtgttaagggagtaccattcagctgtagaaacaatcacagatattttacttgacaagggagagatcaaggctgaggaaatttgggacatatacaaaagggcacctcgaatacctcagcctgcattgaatgcagttgatgaatacggagccctagtttatgcggggcgttggggaatacatgggattacacttcctggaagagttacattttcacctggaaatgttgggttttcaacctttggtgcacccaggcctatggagacccaaagagtcaatgatgaaacatgggagctgatcgataacatctgggataaaagggttcaagaaattaaagctgaagcttccgctgaggttgaagaagacaaagaaagaccacaacttttgatggccagccatttcttttga

Protein Analysis

468

Amino Acids

52.6

Weight (kDa)

5.2

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 1102
AciI CCGC 4 cut(s) 398, 825, 1163, 1347
AclWI GGATC 4 cut(s) 42, 242, 632, 827
AcoI YGGCCR 2 cut(s) 544, 1389
AcsI RAATTY 3 cut(s) 350, 860, 1080
AcuI CTGAAG 5 cut(s) 146, 371, 384, 857, 1359
AdeI CACNNNGTG 1 cut(s) 962
AfaI GTAC 2 cut(s) 559, 1016
AfiI CCNNNNNNNGG 2 cut(s) 125, 1008
AgsI TTSAA 9 cut(s) 190, 331, 517, 539, 953, 1129, 1236, 1325, 1358
AjnI CCWGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
Alw21I GWGCWC 2 cut(s) 772, 1249
Alw26I GTCTC 3 cut(s) 371, 653, 1256
Alw44I GTGCAC 1 cut(s) 1245
AlwI GGATC 4 cut(s) 42, 242, 632, 827
AlwNI CAGNNNCTG 2 cut(s) 169, 211
AoxI GGCC 4 cut(s) 154, 544, 1253, 1389
ApaLI GTGCAC 1 cut(s) 1245
ApeKI GCWGC 4 cut(s) 17, 430, 605, 941
ApoI RAATTY 3 cut(s) 350, 860, 1080
AseI ATTAAT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 2 cut(s) 140, 699
AspS9I GGNCC 2 cut(s) 54, 116
AsuHPI GGTGA 1 cut(s) 1206
AvaII GGWCC 2 cut(s) 54, 116
BaeGI GKGCMC 3 cut(s) 533, 1105, 1249
BalI TGGCCA 1 cut(s) 1391
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 1 cut(s) 1153
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 3 cut(s) 558, 715, 1368
Bbv12I GWGCWC 2 cut(s) 772, 1249
BbvCI CCTCAGC 3 cut(s) 1074, 1116, 1350
BbvI GCAGC 4 cut(s) 29, 417, 617, 953
BccI CCATC 5 cut(s) 172, 176, 305, 310, 1381
BciT130I CCWGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
BcoDI GTCTC 3 cut(s) 371, 653, 1256
BfaI CTAG 6 cut(s) 45, 236, 245, 506, 774, 1154
BfmI CTRYAG 3 cut(s) 431, 907, 1026
BisI GCNGC 4 cut(s) 18, 431, 606, 942
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 4 cut(s) 19, 432, 607, 943
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
Bme18I GGWCC 2 cut(s) 54, 116
BmgT120I GGNCC 2 cut(s) 54, 116
BmiI GGNNCC 2 cut(s) 1104, 1150
BmrFI CCNGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
BmsI GCATC 2 cut(s) 29, 82
BpiI GAAGAC 3 cut(s) 558, 715, 1368
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 3 cut(s) 1074, 1116, 1350
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 2 cut(s) 712, 832
Bsa29I ATCGAT 1 cut(s) 1299
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 1256
BsaJI CCNNGG 1 cut(s) 1250
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 779, 809, 1140, 1170
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 1008
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
BseCI ATCGAT 1 cut(s) 1299
BseDI CCNNGG 1 cut(s) 1250
BseGI GGATG 3 cut(s) 187, 316, 998
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 2 cut(s) 125, 1008
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 4 cut(s) 575, 1065, 1130, 1341
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 3 cut(s) 383, 800, 803
BseSI GKGCMC 3 cut(s) 533, 1105, 1249
BseXI GCAGC 4 cut(s) 29, 417, 617, 953
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 4 cut(s) 156, 546, 1255, 1391
BshNI GGYRCC 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 1299
BsiHKAI GWGCWC 2 cut(s) 772, 1249
BsiSI CCGG 2 cut(s) 119, 543
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 2 cut(s) 125, 1008
BsmAI GTCTC 3 cut(s) 371, 653, 1256
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 4 cut(s) 156, 546, 1255, 1391
Bso31I GGTCTC 1 cut(s) 1256
Bsp1286I GDGCHC 5 cut(s) 533, 772, 1105, 1153, 1249
Bsp143I GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
Bsp1720I GCTNAGC 1 cut(s) 945
BspACI CCGC 4 cut(s) 398, 825, 1163, 1347
BspANI GGCC 4 cut(s) 156, 546, 1255, 1391
BspCNI CTCAG 4 cut(s) 576, 1066, 1129, 1342
BspDI ATCGAT 1 cut(s) 1299
BspLI GGNNCC 2 cut(s) 1104, 1150
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 4 cut(s) 42, 242, 632, 827
BspQI GCTCTTC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 1102
BspTNI GGTCTC 1 cut(s) 1256
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 1250
BssMI GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 4 cut(s) 360, 387, 492, 1195
BstAPI GCANNNNNTGC 2 cut(s) 611, 1130
BstC8I GCNNGC 7 cut(s) 158, 339, 625, 762, 855, 1122, 1393
BstDEI CTNAG 6 cut(s) 478, 584, 945, 1074, 1116, 1350
BstF5I GGATG 3 cut(s) 187, 316, 998
BstHHI GCGC 2 cut(s) 140, 699
BstKTI GATC 7 cut(s) 37, 250, 640, 822, 925, 1068, 1299
BstMAI GTCTC 3 cut(s) 371, 653, 1256
BstMBI GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
BstMWI GCNNNNNNNGC 4 cut(s) 611, 620, 694, 1130
BstNI CCWGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
BstNSI RCATGY 3 cut(s) 341, 627, 768
BstSCI CCNGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
BstSFI CTRYAG 3 cut(s) 431, 907, 1026
BstSLI GKGCMC 3 cut(s) 533, 1105, 1249
BstV1I GCAGC 4 cut(s) 29, 417, 617, 953
BstV2I GAAGAC 3 cut(s) 558, 715, 1368
BstX2I RGATCY 4 cut(s) 34, 247, 637, 819
BstXI CCANNNNNNTGG 1 cut(s) 1258
BstYI RGATCY 4 cut(s) 34, 247, 637, 819
Bsu15I ATCGAT 1 cut(s) 1299
BsuRI GGCC 4 cut(s) 156, 546, 1255, 1391
BsuTUI ATCGAT 1 cut(s) 1299
BtsCI GGATG 3 cut(s) 187, 316, 998
Cac8I GCNNGC 7 cut(s) 158, 339, 625, 762, 855, 1122, 1393
CaiI CAGNNNCTG 2 cut(s) 169, 211
CfoI GCGC 2 cut(s) 140, 699
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 54, 116
ClaI ATCGAT 1 cut(s) 1299
Csp6I GTAC 2 cut(s) 558, 1015
CspCI CAANNNNNGTGG 4 cut(s) 94, 129, 1365, 1400
CviAII CATG 5 cut(s) 338, 624, 765, 1181, 1287
CviQI GTAC 2 cut(s) 558, 1015
DdeI CTNAG 6 cut(s) 478, 584, 945, 1074, 1116, 1350
DpnI GATC 7 cut(s) 36, 249, 639, 821, 924, 1067, 1298
DpnII GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
DraIII CACNNNGTG 1 cut(s) 962
EaeI YGGCCR 2 cut(s) 544, 1389
Eam1104I CTCTTC 4 cut(s) 360, 387, 492, 1195
EarI CTCTTC 4 cut(s) 360, 387, 492, 1195
Eco147I AGGCCT 2 cut(s) 156, 1255
Eco24I GRGCYC 1 cut(s) 1153
Eco31I GGTCTC 1 cut(s) 1256
Eco32I GATATC 2 cut(s) 241, 667
Eco47I GGWCC 2 cut(s) 54, 116
Eco57I CTGAAG 5 cut(s) 146, 371, 384, 857, 1359
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
EcoRV GATATC 2 cut(s) 241, 667
EcoT38I GRGCYC 1 cut(s) 1153
FaeI CATG 5 cut(s) 341, 627, 768, 1184, 1290
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 1 cut(s) 1100
FatI CATG 5 cut(s) 337, 623, 764, 1180, 1286
FauI CCCGC 1 cut(s) 1156
Fnu4HI GCNGC 4 cut(s) 18, 431, 606, 942
FokI GGATG 3 cut(s) 194, 323, 985
FriOI GRGCYC 1 cut(s) 1153
Fsp4HI GCNGC 4 cut(s) 18, 431, 606, 942
FspBI CTAG 6 cut(s) 45, 236, 245, 506, 774, 1154
GlaI GCGC 2 cut(s) 139, 698
GluI GCNGC 4 cut(s) 18, 431, 606, 942
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 4 cut(s) 156, 546, 1255, 1391
HapII CCGG 2 cut(s) 119, 543
HhaI GCGC 2 cut(s) 140, 699
Hin1II CATG 5 cut(s) 341, 627, 768, 1184, 1290
Hin6I GCGC 2 cut(s) 138, 697
HinP1I GCGC 2 cut(s) 138, 697
HincII GTYRAC 2 cut(s) 805, 988
HindII GTYRAC 2 cut(s) 805, 988
HindIII AAGCTT 2 cut(s) 947, 1341
HinfI GANTC 4 cut(s) 186, 379, 868, 1272
HpaII CCGG 2 cut(s) 119, 543
HphI GGTGA 1 cut(s) 1206
Hpy166II GTNNAC 5 cut(s) 116, 748, 805, 988, 1247
Hpy188I TCNGA 5 cut(s) 165, 364, 739, 867, 876
Hpy188III TCNNGA 5 cut(s) 389, 635, 729, 962, 1325
Hpy8I GTNNAC 5 cut(s) 116, 748, 805, 988, 1247
HpyAV CCTTC 6 cut(s) 25, 67, 259, 325, 367, 466
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 4 cut(s) 611, 620, 694, 1130
HpyF3I CTNAG 6 cut(s) 478, 584, 945, 1074, 1116, 1350
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 5 cut(s) 341, 627, 768, 1184, 1290
HspAI GCGC 2 cut(s) 138, 697
Kzo9I GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 4 cut(s) 422, 775, 1148, 1291
Lsp1109I GCAGC 4 cut(s) 29, 417, 617, 953
LweI GCATC 2 cut(s) 29, 82
MaeI CTAG 6 cut(s) 45, 236, 245, 506, 774, 1154
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 1204
MalI GATC 7 cut(s) 36, 249, 639, 821, 924, 1067, 1298
MboI GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
MflI RGATCY 4 cut(s) 34, 247, 637, 819
MhlI GDGCHC 5 cut(s) 533, 772, 1105, 1153, 1249
MlsI TGGCCA 1 cut(s) 1391
MluCI AATT 8 cut(s) 350, 393, 575, 780, 808, 860, 1080, 1329
MluNI TGGCCA 1 cut(s) 1391
MlyI GAGTC 2 cut(s) 373, 1281
MmeI TCCRAC 1 cut(s) 797
Mox20I TGGCCA 1 cut(s) 1391
MroXI GAANNNNTTC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 1391
MseI TTAA 4 cut(s) 578, 678, 1007, 1332
Msp20I TGGCCA 1 cut(s) 1391
MspA1I CMGCKG 3 cut(s) 608, 1025, 1349
MspI CCGG 2 cut(s) 119, 543
MspR9I CCNGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
Mva1269I GAATGC 1 cut(s) 1135
MvaI CCWGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
MwoI GCNNNNNNNGC 4 cut(s) 611, 620, 694, 1130
NdeII GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
NlaIII CATG 5 cut(s) 341, 627, 768, 1184, 1290
NlaIV GGNNCC 2 cut(s) 1104, 1150
NspI RCATGY 3 cut(s) 341, 627, 768
PaeI GCATGC 2 cut(s) 341, 627
PceI AGGCCT 2 cut(s) 156, 1255
PciSI GCTCTTC 1 cut(s) 492
PctI GAATGC 1 cut(s) 1135
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 2 cut(s) 186, 868
PfoI TCCNGGA 1 cut(s) 1195
PkrI GCNGC 4 cut(s) 19, 432, 607, 943
PleI GAGTC 2 cut(s) 373, 1280
PpsI GAGTC 2 cut(s) 373, 1280
PpuMI RGGWCCY 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 678
PsiI TTATAA 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
PspGI CCWGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
PspN4I GGNNCC 2 cut(s) 1104, 1150
PspPI GGNCC 2 cut(s) 54, 116
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 1 cut(s) 435
PstNI CAGNNNCTG 2 cut(s) 169, 211
PsuI RGATCY 4 cut(s) 34, 247, 637, 819
PvuII CAGCTG 2 cut(s) 608, 1025
RsaI GTAC 2 cut(s) 559, 1016
RsaNI GTAC 2 cut(s) 558, 1015
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 4 cut(s) 578, 678, 1007, 1332
SatI GCNGC 4 cut(s) 18, 431, 606, 942
Sau3AI GATC 7 cut(s) 34, 247, 637, 819, 922, 1065, 1296
Sau96I GGNCC 2 cut(s) 54, 116
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 373, 1281
ScrFI CCNGG 6 cut(s) 52, 469, 620, 1197, 1218, 1252
SduI GDGCHC 5 cut(s) 533, 772, 1105, 1153, 1249
SfaNI GCATC 2 cut(s) 29, 82
SfcI CTRYAG 3 cut(s) 431, 907, 1026
SinI GGWCC 2 cut(s) 54, 116
SmlI CTYRAG 2 cut(s) 727, 847
SmoI CTYRAG 2 cut(s) 727, 847
SphI GCATGC 2 cut(s) 341, 627
Sse9I AATT 8 cut(s) 350, 393, 575, 780, 808, 860, 1080, 1329
SseBI AGGCCT 2 cut(s) 156, 1255
SsiI CCGC 4 cut(s) 398, 825, 1163, 1347
SspMI CTAG 6 cut(s) 45, 236, 245, 506, 774, 1154
StuI AGGCCT 2 cut(s) 156, 1255
StyD4I CCNGG 6 cut(s) 50, 467, 618, 1195, 1216, 1250
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 1108, 1299
TasI AATT 8 cut(s) 350, 393, 575, 780, 808, 860, 1080, 1329
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 2 cut(s) 186, 868
Tru1I TTAA 4 cut(s) 578, 678, 1007, 1332
Tru9I TTAA 4 cut(s) 578, 678, 1007, 1332
TseI GCWGC 4 cut(s) 17, 430, 605, 941
TspDTI ATGAA 5 cut(s) 643, 981, 987, 1155, 1296
TspGWI ACGGA 3 cut(s) 347, 991, 1161
VneI GTGCAC 1 cut(s) 1245
VpaK11BI GGWCC 2 cut(s) 54, 116
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 3 cut(s) 350, 860, 1080
XceI RCATGY 3 cut(s) 341, 627, 768
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 6 cut(s) 45, 236, 245, 506, 774, 1154
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.