Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017588

Physical Location & Seq

Genomic Coordinates Reverse (-)

17395919 .. 17399936

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25602.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATCTGGCGATTGAGAGAGAGCTTCCTCGAGCTGCTGGCCTTGTGAAGATCTTGGATCCTTGTCGGCTGTCATGGTTTCTTGGATTTGTAGATGGAGAAATTGATGTTGTGAGGCTCAACCTTTTGATTGGTGGTTCTCTCTTGTTCTGTGGTGTGGGACTGGATTGGCAGCGGTGTATCATGACAGAAAGTCTTGGTGTTTTGCTTCCGGCGGCTCAGCGACGATGCGTTGCTCGCGGTGCGATTTGGATGGCGGCGACTAAGGAAGCAGCTTTTGCGATGCTAGCATTTCCTGCATTATCGGAAACCTGCGAAGATGCTGAAGGGATGAAGCAACTGAGAAGAGATGAAGAAATGGCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.47

Weight (kDa)

5.15

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25602
rosa_chinensis	RchiOBHm_Chr1g0348871 RchiOBHm_Chr2g0119471 RchiOBHm_Chr2g0121481 RchiOBHm_Chr2g0141001 RchiOBHm_Chr4g0431321 RchiOBHm_Chr6g0261061 RchiOBHm_Chr6g0288641
rosa_multiflora	Rmu_sc0001843.1_g000007 Rmu_sc0005816.1_g000036
rosa_roxburghii	Rroxscaffold_7G00156510 Rroxscaffold_7G00166100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccII	CGCG	1 cut(s)	240
AciI	CCGC	4 cut(s)	175, 215, 240, 257
AclWI	GGATC	2 cut(s)	53, 66
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	345
AhdI	GACNNNNNGTC	1 cut(s)	192
AluBI	AGCT	3 cut(s)	25, 35, 275
AluI	AGCT	3 cut(s)	25, 35, 275
AlwI	GGATC	2 cut(s)	53, 66
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	40, 360
ApeKI	GCWGC	3 cut(s)	35, 172, 272
AsuNHI	GCTAGC	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	58
BbvI	GCAGC	3 cut(s)	22, 184, 284
BccI	CCATC	2 cut(s)	89, 247
BfaI	CTAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	5 cut(s)	36, 173, 216, 258, 273
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	5 cut(s)	37, 174, 217, 259, 274
BmeRI	GACNNNNNGTC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	4 cut(s)	13, 218, 273, 310
BmtI	GCTAGC	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	258, 336
BseMII	CTCAG	2 cut(s)	233, 332
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	22, 184, 284
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	42, 362
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	42, 362
BsoBI	CYCGRG	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	51, 58
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	175, 215, 240, 257
BspANI	GGCC	2 cut(s)	42, 362
BspCNI	CTCAG	2 cut(s)	232, 333
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	320
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	53, 66
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	51, 58
Bst6I	CTCTTC	1 cut(s)	340
BstAPI	GCANNNNNTGC	2 cut(s)	278, 296
BstC8I	GCNNGC	3 cut(s)	40, 238, 288
BstDEI	CTNAG	3 cut(s)	219, 264, 341
BstF5I	GGATG	2 cut(s)	258, 336
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	54, 61
BstMBI	GATC	2 cut(s)	51, 58
BstMWI	GCNNNNNNNGC	5 cut(s)	237, 242, 278, 287, 296
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	22, 184, 284
BstX2I	RGATCY	2 cut(s)	51, 58
BstYI	RGATCY	2 cut(s)	51, 58
BsuRI	GGCC	2 cut(s)	42, 362
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	258, 336
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	3 cut(s)	40, 238, 288
CciI	TCATGA	1 cut(s)	183
CviAII	CATG	3 cut(s)	75, 184, 364
CviJI	RGCY	8 cut(s)	25, 35, 42, 70, 118, 218, 275, 362
CviKI_1	RGCY	8 cut(s)	25, 35, 42, 70, 118, 218, 275, 362
DdeI	CTNAG	3 cut(s)	219, 264, 341
DpnI	GATC	2 cut(s)	53, 60
DpnII	GATC	2 cut(s)	51, 58
DriI	GACNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	78, 187, 367
FaiI	YATR	3 cut(s)	76, 185, 365
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	74, 183, 363
Fnu4HI	GCNGC	5 cut(s)	36, 173, 216, 258, 273
FokI	GGATG	2 cut(s)	265, 343
Fsp4HI	GCNGC	5 cut(s)	36, 173, 216, 258, 273
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	5 cut(s)	36, 173, 216, 258, 273
HaeIII	GGCC	2 cut(s)	42, 362
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	3 cut(s)	78, 187, 367
HpaII	CCGG	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	4, 299
HpyF10VI	GCNNNNNNNGC	5 cut(s)	237, 242, 278, 287, 296
HpyF3I	CTNAG	3 cut(s)	219, 264, 341
Hsp92II	CATG	3 cut(s)	78, 187, 367
Kzo9I	GATC	2 cut(s)	51, 58
LpnPI	CCDG	5 cut(s)	24, 149, 225, 309, 325
Lsp1109I	GCAGC	3 cut(s)	22, 184, 284
LweI	GCATC	4 cut(s)	13, 218, 273, 310
MaeI	CTAG	1 cut(s)	287
MalI	GATC	2 cut(s)	53, 60
MboI	GATC	2 cut(s)	51, 58
MboII	GAAGA	4 cut(s)	61, 329, 357, 365
MflI	RGATCY	2 cut(s)	51, 58
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	2 cut(s)	39, 108
Mox20I	TGGCCA	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	237, 242, 278, 287, 296
NdeII	GATC	2 cut(s)	51, 58
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	78, 187, 367
NlaIV	GGNNCC	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	183
PkrI	GCNGC	5 cut(s)	37, 174, 217, 259, 274
PspN4I	GGNNCC	1 cut(s)	60
PspXI	VCTCGAGB	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	51, 58
SatI	GCNGC	5 cut(s)	36, 173, 216, 258, 273
Sau3AI	GATC	2 cut(s)	51, 58
SetI	ASST	5 cut(s)	27, 37, 126, 277, 314
SfaNI	GCATC	4 cut(s)	13, 218, 273, 310
Sfr274I	CTCGAG	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	4 cut(s)	175, 215, 240, 257
SspMI	CTAG	1 cut(s)	287
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	102
TauI	GCSGC	2 cut(s)	218, 260
TseI	GCWGC	3 cut(s)	35, 172, 272
TspDTI	ATGAA	2 cut(s)	347, 366
XhoI	CTCGAG	1 cut(s)	30
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.