RchiOBHm_Chr6g0261061

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
16027738 .. 16029018
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23412

Sequence Viewer

Length: 300 bp
ATGGGTTCGTCACCCCCCATTCTCCATGGTTCTGGTTCTCGGCTCTGGTTCTCGATCCTCTTTCAGCAGCCACGACTCTTTCTTGGTTTGGGTCTTGATGGTGGACAGGATAAGGTTGTTTTGAGGGATCTTCTTCCCTGGGTTGTTGGTTTTCATATGATTTGTGTCATGGGTTTTGATTGGCATCGGTTATTCAACATGGAACTACTTGGTGTACTGCTTCTGGCGACACATCAGCGATTCTACATGGTCGGCGGCGTGAGGTGGTCTGCAGTAGCTAGGTTTTCAGTTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

9.3

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 49, 135
AfaI GTAC 1 cut(s) 216
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 2 cut(s) 49, 135
ApeKI GCWGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 3
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 139
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 68, 256
BlsI GCNGC 2 cut(s) 69, 257
Bme1390I CCNGG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 25, 137, 138
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 25, 137, 138
BseJI GATNNNNATC 1 cut(s) 183
BseXI GCAGC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 54, 127
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 2 cut(s) 49, 135
BssECI CCNNGG 3 cut(s) 25, 137, 138
BssMI GATC 2 cut(s) 54, 127
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 25
BstKTI GATC 2 cut(s) 57, 130
BstMBI GATC 2 cut(s) 54, 127
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 25
Csp6I GTAC 1 cut(s) 215
CviAII CATG 4 cut(s) 26, 169, 199, 247
CviJI RGCY 3 cut(s) 43, 70, 278
CviKI_1 RGCY 3 cut(s) 43, 70, 278
CviQI GTAC 1 cut(s) 215
DpnI GATC 2 cut(s) 56, 129
DpnII GATC 2 cut(s) 54, 127
Eco130I CCWWGG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 4 cut(s) 29, 172, 202, 250
FaiI YATR 7 cut(s) 27, 156, 158, 170, 200, 248, 293
FatI CATG 4 cut(s) 25, 168, 198, 246
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 68, 256
Fsp4HI GCNGC 2 cut(s) 68, 256
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 68, 256
Hin1II CATG 4 cut(s) 29, 172, 202, 250
HinfI GANTC 2 cut(s) 75, 240
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 104, 215
Hpy188III TCNNGA 2 cut(s) 52, 95
Hpy8I GTNNAC 2 cut(s) 104, 215
HpyCH4V TGCA 1 cut(s) 272
Hsp92II CATG 4 cut(s) 29, 172, 202, 250
Kzo9I GATC 2 cut(s) 54, 127
LpnPI CCDG 6 cut(s) 18, 31, 92, 124, 151, 209
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 9
MalI GATC 2 cut(s) 56, 129
MboI GATC 2 cut(s) 54, 127
MboII GAAGA 2 cut(s) 122, 125
MflI RGATCY 1 cut(s) 127
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 3 cut(s) 68, 117, 255
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 156
NdeII GATC 2 cut(s) 54, 127
NlaIII CATG 4 cut(s) 29, 172, 202, 250
NmeAIII GCCGAG 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 9
PasI CCCWGGG 1 cut(s) 138
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 69, 257
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SatI GCNGC 2 cut(s) 68, 256
Sau3AI GATC 2 cut(s) 54, 127
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 139
SetI ASST 4 cut(s) 117, 266, 280, 284
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 270
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 25
TaqI TCGA 1 cut(s) 53
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 1 cut(s) 240
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 143
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.