Rroxscaffold_7G00166100

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
7674452 .. 7677999
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166100.1

Sequence Viewer

Length: 198 bp
ATGGGTCTCTATGGTGGAGAGTGTGGTGTTGTTTTGAGGGATCTTATCCCTTGGGTCGTTGGATTTCATATGGTTTGTGTTCGGGGATTTGATTGGCATCGGTTATACGACGAAACTACTTGGTGTTCGCCCGGCGACACATCGGCGGCTCTGCATGTTGCTTGTTATGATAGTAGTGGGGATGATCCCGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.19

Weight (kDa)

4.32

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AclWI GGATC 2 cut(s) 48, 179
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 48, 179
AsuC2I CCSGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 11
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 40, 184
BspACI CCGC 1 cut(s) 146
BspPI GGATC 2 cut(s) 48, 179
BspTNI GGTCTC 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 40, 184
BssT1I CCWWGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 43, 187
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 40, 184
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 1 cut(s) 187
CviAII CATG 1 cut(s) 155
CviJI RGCY 1 cut(s) 149
CviKI_1 RGCY 1 cut(s) 149
DpnI GATC 2 cut(s) 42, 186
DpnII GATC 2 cut(s) 40, 184
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 12, 69, 71, 106, 156, 168
FatI CATG 1 cut(s) 154
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 158
HpaII CCGG 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 154
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 2 cut(s) 40, 184
LpnPI CCDG 1 cut(s) 145
LweI GCATC 1 cut(s) 106
MalI GATC 2 cut(s) 42, 186
MboI GATC 2 cut(s) 40, 184
MflI RGATCY 1 cut(s) 40
MluCI AATT 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 196
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 69
NdeII GATC 2 cut(s) 40, 184
NlaIII CATG 1 cut(s) 158
NspI RCATGY 1 cut(s) 158
PkrI GCNGC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 40
SaqAI TTAA 1 cut(s) 196
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 40, 184
ScrFI CCNGG 1 cut(s) 132
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 7 cut(s) 63, 95, 132, 143, 144, 167, 174
Sse9I AATT 1 cut(s) 193
SsiI CCGC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 50
TasI AATT 1 cut(s) 193
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 56
XceI RCATGY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.