RchiOBHm_Chr6g0288641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017588
Physical Location & Seq
Reverse (-)
51844992 .. 51846224
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25896

Sequence Viewer

Length: 375 bp
ATGGGTCTCTATGGTGGAGAGTATGGTGTTGTTTTGAGGGATCTTATCTCTTGGGTTGTTGGATTTCACATGATTTGTGTTCTGGGCTTTGATTGGCATCGGATATTCAGTACGGAATTACTTGGTGTTCTGCTTCCGGCGTCACATCGGCGGCTCTCCGTGGTCGGCGGCGCGAGGTGGTCTGCAGTAGCTAGGTTTTCTGTATTGGAGTGGGCTTATTGTTTGGGCCTTTGTTTCAGTTGGTTTACAAGGGTTGATTTCCTTATACTGGCTCTTGTTGAGCCCAGTGGGAAATTAAGTTTGCTTTCCTTATTGTCTGTTTGGGCATGTCCATCAGACTTATTAGTAGGTAATAAGTTCAGCCTTATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

7.71

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 151, 168
AclWI GGATC 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 48
AoxI GGCC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 285
BccI CCATC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 192, 373
BfmI CTRYAG 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 152, 169
BlsI GCNGC 2 cut(s) 153, 170
BmgT120I GGNCC 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 273, 285
Bse8I GATNNNNATC 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 273, 285
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 151, 168
BspANI GGCC 1 cut(s) 228
BspFNI CGCG 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 273, 285
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 70, 327
CviJI RGCY 9 cut(s) 87, 154, 191, 215, 228, 272, 283, 363, 372
CviKI_1 RGCY 9 cut(s) 87, 154, 191, 215, 228, 272, 283, 363, 372
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 2 cut(s) 73, 330
FaiI YATR 6 cut(s) 12, 24, 71, 266, 328, 368
FatI CATG 2 cut(s) 69, 326
Fnu4HI GCNGC 2 cut(s) 152, 169
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 152, 169
FspBI CTAG 2 cut(s) 192, 373
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 152, 169
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 73, 330
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 102, 337
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 73, 330
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 68, 150, 254, 298
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 192, 373
MaeIII GTNAC 1 cut(s) 141
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 116, 293
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 2 cut(s) 30, 168
MseI TTAA 1 cut(s) 296
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 73, 330
NmuCI GTSAC 1 cut(s) 141
NspI RCATGY 1 cut(s) 330
PkrI GCNGC 2 cut(s) 153, 170
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 152, 169
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 226
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 179, 193, 197, 352
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 116, 293
SsiI CCGC 2 cut(s) 151, 168
SspMI CTAG 2 cut(s) 192, 373
TasI AATT 2 cut(s) 116, 293
TauI GCSGC 2 cut(s) 154, 171
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 141
TspGWI ACGGA 2 cut(s) 128, 148
TspRI CASTG 1 cut(s) 292
XceI RCATGY 1 cut(s) 330
XspI CTAG 2 cut(s) 192, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.