Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017588

Physical Location & Seq

Genomic Coordinates Reverse (-)

55588335 .. 55589289

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTTTTCACCCCCCATTCTCCATTGTTACTGCTCTTGTTCTAGTTCTATGCTTTGGATCTCTGATCCTGTTCGGCAGCCATGGCTTCTTCTTCGTCTTGCTGGTAGAGGAAATGATGTTGTTGTGAGGGATTTCATCCCTTTGGTTGTTGTTTATCTTTTGATTTGTGTATTGGGACTTGGATGGCATCGGTTCACCATTACCAAATTTCTGGTTGCTTTGTTTACGGCGTTACTTCGGCGAAGGTTCGTGGCTAGCGGCGGCACGGTTTGGACGGCAGTAGCTAGGGTTTCAGTAGTGGGTTGGGTCTCTTATTGGGCCTATGCTTTAGTTATTATTGTTTTAAGGATTAATTTCCTAATACTGGCTCCTTTGGAGCCCAGGAGGGAATTAATTTTCCTTGTTAGTTTCCTGTCTGTTTGGGCATGTCCAACAGACTGGTTGTGTGTTTCTATTTTCAGCCCATTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.92

Weight (kDa)

9.33

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25602
rosa_chinensis	RchiOBHm_Chr1g0348871 RchiOBHm_Chr2g0119471 RchiOBHm_Chr2g0121481 RchiOBHm_Chr2g0141001 RchiOBHm_Chr4g0431321 RchiOBHm_Chr6g0261061 RchiOBHm_Chr6g0288641
rosa_multiflora	Rmu_sc0001843.1_g000007 Rmu_sc0005816.1_g000036
rosa_roxburghii	Rroxscaffold_7G00156510 Rroxscaffold_7G00166100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	261, 264
AclWI	GGATC	2 cut(s)	62, 68
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	62, 68
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	2 cut(s)	354, 395
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	3, 190
AsuNHI	GCTAGC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	2 cut(s)	246, 294
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	4 cut(s)	45, 258, 288, 475
BisI	GCNGC	3 cut(s)	80, 262, 265
BlsI	GCNGC	3 cut(s)	81, 263, 266
Bme1390I	CCNGG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	372, 381
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	83, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	372, 446
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	83, 383
BseGI	GGATG	2 cut(s)	138, 191
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	372, 446
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	60, 67
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	261, 264
BspANI	GGCC	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	372, 381
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	62, 68
BspTNI	GGTCTC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	372, 446
BssECI	CCNNGG	2 cut(s)	83, 383
BssMI	GATC	2 cut(s)	60, 67
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	138, 191
BstKTI	GATC	2 cut(s)	63, 70
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	60, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	2 cut(s)	214, 441
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	138, 191
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	321
CviAII	CATG	2 cut(s)	84, 429
CviJI	RGCY	8 cut(s)	82, 88, 257, 287, 323, 371, 382, 465
CviKI_1	RGCY	8 cut(s)	82, 88, 257, 287, 323, 371, 382, 465
DpnI	GATC	2 cut(s)	62, 69
DpnII	GATC	2 cut(s)	60, 67
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	2 cut(s)	87, 432
FaiI	YATR	4 cut(s)	53, 85, 327, 430
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	83, 428
Fnu4HI	GCNGC	3 cut(s)	80, 262, 265
FokI	GGATG	2 cut(s)	125, 198
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	80, 262, 265
FspBI	CTAG	4 cut(s)	45, 258, 288, 475
GluI	GCNGC	3 cut(s)	80, 262, 265
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	87, 432
HphI	GGTGA	2 cut(s)	3, 190
Hpy166II	GTNNAC	2 cut(s)	198, 228
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	198, 228
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	87, 432
Kzo9I	GATC	2 cut(s)	60, 67
LmnI	GCTCC	2 cut(s)	376, 379
LpnPI	CCDG	8 cut(s)	84, 90, 200, 353, 370, 397, 427, 428
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	4 cut(s)	45, 258, 288, 475
MaeIII	GTNAC	2 cut(s)	29, 234
MalI	GATC	2 cut(s)	62, 69
MboI	GATC	2 cut(s)	60, 67
MboII	GAAGA	2 cut(s)	83, 86
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	4 cut(s)	209, 355, 392, 396
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	3 cut(s)	104, 123, 381
MseI	TTAA	3 cut(s)	347, 354, 395
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	60, 67
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	87, 432
NlaIV	GGNNCC	2 cut(s)	372, 381
NspI	RCATGY	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	81, 263, 266
PshBI	ATTAAT	2 cut(s)	354, 395
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	372, 381
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	347, 354, 395
SatI	GCNGC	3 cut(s)	80, 262, 265
Sau3AI	GATC	2 cut(s)	60, 67
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	2 cut(s)	251, 289
SfaNI	GCATC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	209, 355, 392, 396
SsiI	CCGC	2 cut(s)	261, 264
SspMI	CTAG	4 cut(s)	45, 258, 288, 475
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	4 cut(s)	209, 355, 392, 396
TauI	GCSGC	2 cut(s)	264, 267
Tru1I	TTAA	3 cut(s)	347, 354, 395
Tru9I	TTAA	3 cut(s)	347, 354, 395
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	127
VspI	ATTAAT	2 cut(s)	354, 395
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	432
XspI	CTAG	4 cut(s)	45, 258, 288, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.