RchiOBHm_Chr2g0121481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017588
Physical Location & Seq
Reverse (-)
34337308 .. 34338188
881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49399

Sequence Viewer

Length: 396 bp
ATGGGTGCTCACGCATGGGTTCGTCACCCCCATTCTCCATGGTTCTGGTTCTCAACTCTGGTTCTCGGTCCTCTTTCGACAGCCACGACTCTTTCATGGTTGGGTCTTGATGGTGGACAATATAAGGTTGTTTTGAGGGATCTTCTTTCCTGGGTTGTTGGTTTTCATATGATTTGTGTTCTGGGTTTTGATTGGCATCGGTTATTCAACATGGAACTGCTTGGTATACTGCTTCCGGCGACACATCGGGCATTCTACATGGTCGGCGGCATGAGGTGGTCTACAGTAGCTAGGTTTTCTGTTTTGGATTGGGCTTGTTCTTTGGGCCTATGCATTAGTTTTTTTACAAGGGTTAATTTCCTTATACTAGCTTTTCTGAGCCCAGTTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.86

Weight (kDa)

9.1

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 226, 281
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 147
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 290, 371
AluI AGCT 2 cut(s) 290, 371
Alw21I GWGCWC 1 cut(s) 10
AlwI GGATC 1 cut(s) 147
AoxI GGCC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 68, 325
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 2 cut(s) 291, 368
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 68, 325
BmrFI CCNGG 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 38, 150
Bse1I ACTGG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 38, 150
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 383
BshFI GGCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 236
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 10, 383
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 369
BspPI GGATC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 38, 150
BssMI GATC 1 cut(s) 139
BssNAI GTATAC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 38
Bst1107I GTATAC 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 38
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 1 cut(s) 139
BstZ17I GTATAC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 68, 325
CviAII CATG 6 cut(s) 15, 39, 96, 211, 259, 271
CviJI RGCY 6 cut(s) 83, 290, 314, 327, 371, 381
CviKI_1 RGCY 6 cut(s) 83, 290, 314, 327, 371, 381
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 6 cut(s) 18, 42, 99, 214, 262, 274
FatI CATG 6 cut(s) 14, 38, 95, 210, 258, 270
FauNDI CATATG 1 cut(s) 168
FblI GTMKAC 2 cut(s) 226, 281
Fnu4HI GCNGC 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 2 cut(s) 291, 368
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 236
Hin1II CATG 6 cut(s) 18, 42, 99, 214, 262, 274
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 116, 227, 282
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 3 cut(s) 116, 227, 282
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 6 cut(s) 18, 42, 99, 214, 262, 274
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 31, 44, 136, 163, 167, 249
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 291, 368
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 10, 383
MluCI AATT 2 cut(s) 355, 391
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 3 cut(s) 81, 129, 267
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 2 cut(s) 354, 394
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 151
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 168
NdeII GATC 1 cut(s) 139
NlaIII CATG 6 cut(s) 18, 42, 99, 214, 262, 274
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PctI GAATGC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 2 cut(s) 68, 325
PsuI RGATCY 1 cut(s) 139
SaqAI TTAA 2 cut(s) 354, 394
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 68, 325
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 10, 383
SetI ASST 5 cut(s) 129, 278, 292, 296, 373
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 68
Sse9I AATT 2 cut(s) 355, 391
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 291, 368
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 77
TaqII GACCGA 1 cut(s) 56
TasI AATT 2 cut(s) 355, 391
TauI GCSGC 1 cut(s) 270
Tru1I TTAA 2 cut(s) 354, 394
Tru9I TTAA 2 cut(s) 354, 394
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 84, 155
VpaK11BI GGWCC 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 226, 281
XspI CTAG 2 cut(s) 291, 368
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.