RchiOBHm_Chr1g0348871

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
41901121 .. 41901489
369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57486

Sequence Viewer

Length: 276 bp
ATGGGTTTTTCACCCCTCATTCTCCATTGTTACTGGTTTGTTTCTTGTTCTGGTTCTATGCCCTGGATCTCGGATCCTTGTCGGCTGCCATGGTTTTTTCTTGGTCTTGTTGGTGGAGAGAATGATTCTTGTGTGAGGAATTTCATCCCATTGGTTGTTGTTTCTCTCTTGATCTGTGTTTTGGAATTTGTTTGGGCATCGGTTTATCACGACGAAACTTTTAGGTGTTTTGTTTCAGGCGGCTCCTCGGCATGTCGCAATCTGGACAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.23

Weight (kDa)

4.96

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AclWI GGATC 3 cut(s) 68, 74, 81
AcsI RAATTY 2 cut(s) 139, 185
AjnI CCWGG 1 cut(s) 62
AlwI GGATC 3 cut(s) 68, 74, 81
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 139, 185
AsuHPI GGTGA 1 cut(s) 3
BamHI GGATCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 274
BisI GCNGC 2 cut(s) 86, 241
BlsI GCNGC 2 cut(s) 87, 242
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 75, 244
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 62, 89, 246
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 62, 89, 246
BseGI GGATG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 66, 73, 171
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 75, 244
BspPI GGATC 3 cut(s) 68, 74, 81
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 62, 89, 246
BssMI GATC 3 cut(s) 66, 73, 171
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 3 cut(s) 69, 76, 174
BstMBI GATC 3 cut(s) 66, 73, 171
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 66, 73
BstYI RGATCY 2 cut(s) 66, 73
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 144
CviAII CATG 2 cut(s) 90, 252
CviJI RGCY 2 cut(s) 85, 243
CviKI_1 RGCY 2 cut(s) 85, 243
DpnI GATC 3 cut(s) 68, 75, 173
DpnII GATC 3 cut(s) 66, 73, 171
Eco130I CCWWGG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 2 cut(s) 93, 255
FaiI YATR 3 cut(s) 59, 91, 253
FatI CATG 2 cut(s) 89, 251
Fnu4HI GCNGC 2 cut(s) 86, 241
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 86, 241
FspBI CTAG 1 cut(s) 274
GluI GCNGC 2 cut(s) 86, 241
Hin1II CATG 2 cut(s) 93, 255
HinfI GANTC 1 cut(s) 125
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 169, 209, 263
Hpy99I CGWCG 1 cut(s) 215
Hsp92II CATG 2 cut(s) 93, 255
Kzo9I GATC 3 cut(s) 66, 73, 171
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 19, 36, 49, 76, 222, 248
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 206
MaeI CTAG 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 68, 75, 173
MboI GATC 3 cut(s) 66, 73, 171
MflI RGATCY 2 cut(s) 66, 73
MluCI AATT 2 cut(s) 139, 185
MnlI CCTC 3 cut(s) 26, 129, 256
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 89
NdeII GATC 3 cut(s) 66, 73, 171
NlaIII CATG 2 cut(s) 93, 255
NlaIV GGNNCC 2 cut(s) 75, 244
NmeAIII GCCGAG 1 cut(s) 227
NspI RCATGY 1 cut(s) 255
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 87, 242
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 75, 244
PsuI RGATCY 2 cut(s) 66, 73
SatI GCNGC 2 cut(s) 86, 241
Sau3AI GATC 3 cut(s) 66, 73, 171
ScrFI CCNGG 1 cut(s) 64
SetI ASST 1 cut(s) 227
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 2 cut(s) 139, 185
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 89
TasI AATT 2 cut(s) 139, 185
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 125
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 133
XapI RAATTY 2 cut(s) 139, 185
XceI RCATGY 1 cut(s) 255
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.