RchiOBHm_Chr2g0119471

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
31867286 .. 31868088
803 bp
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UTR
Exon/CDS
Intron
PRQ49218

Sequence Viewer

Length: 375 bp
ATGGGTCTCTATGGTGGAGAGTATGGTGTTGTTTTGAGGGATTATATCCCTTGGGTTGTTGATATTCATATGATTTGTGTTCTGGGCTTTGATTGGCATCTGATATACAGCACGAAACTACTTGGTGTTCTGCTTCCGGCGACATATCGGCGGCTCTTCATGGTCAGCGGCGCGAGGTGGTCTGCAGTAGCTAGGTTTTCTGTATTGGATTGGGCTTATTCTTTGGGCCTTTGTTTCAGTTGTTTTACAAGGGTTAATTTCCTAATACTGGCCCTTGTTAAGCCCAGTGGGAAATTAAGTTTCCTTTCTTTATTGTCTGTTTGGGCCTGTCCATCAGACTTTTTAGTAGGTACTAATTTCAGCCCTTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

8.78

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 151, 168
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 3 cut(s) 226, 270, 324
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 226, 271, 324
BccI CCATC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 192, 373
BfmI CTRYAG 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 152, 169
BlsI GCNGC 2 cut(s) 153, 170
BmgT120I GGNCC 3 cut(s) 226, 271, 324
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 273, 285
Bse8I GATNNNNATC 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 273, 285
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 3 cut(s) 228, 272, 326
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 3 cut(s) 228, 272, 326
Bso31I GGTCTC 1 cut(s) 11
BspACI CCGC 2 cut(s) 151, 168
BspANI GGCC 3 cut(s) 228, 272, 326
BspFNI CGCG 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 187
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 273, 285
BssECI CCNNGG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 161
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 173
BsuRI GGCC 3 cut(s) 228, 272, 326
BtsIMutI CAGTG 1 cut(s) 292
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 226, 271, 324
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 160
CviQI GTAC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 163
FaiI YATR 8 cut(s) 12, 24, 45, 69, 71, 106, 145, 161
FatI CATG 1 cut(s) 159
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 152, 169
Fsp4HI GCNGC 2 cut(s) 152, 169
FspBI CTAG 2 cut(s) 192, 373
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 152, 169
HaeIII GGCC 3 cut(s) 228, 272, 326
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 102, 337
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 171
LguI GCTCTTC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 68, 150, 254, 298, 340
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 192, 373
MboII GAAGA 1 cut(s) 148
MluCI AATT 3 cut(s) 256, 293, 355
MnlI CCTC 2 cut(s) 30, 168
MseI TTAA 3 cut(s) 255, 279, 296
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeI CATATG 1 cut(s) 69
NlaIII CATG 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 153, 170
PspPI GGNCC 3 cut(s) 226, 271, 324
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 255, 279, 296
SatI GCNGC 2 cut(s) 152, 169
Sau96I GGNCC 3 cut(s) 226, 271, 324
SetI ASST 4 cut(s) 179, 193, 197, 352
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 256, 293, 355
SsiI CCGC 2 cut(s) 151, 168
SspMI CTAG 2 cut(s) 192, 373
StyI CCWWGG 1 cut(s) 50
TasI AATT 3 cut(s) 256, 293, 355
TauI GCSGC 2 cut(s) 154, 171
Tru1I TTAA 3 cut(s) 255, 279, 296
Tru9I TTAA 3 cut(s) 255, 279, 296
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 56, 148
TspRI CASTG 1 cut(s) 292
XspI CTAG 2 cut(s) 192, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.