Rroxscaffold_7G00156510

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
346571 .. 347597
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156510.1

Sequence Viewer

Length: 180 bp
ATGGGTGCTCACGCATGGGTTCGTCACCCCCATTCTCCATGGTTCTGGTTCTCAGTCCTCTTTCGGCAGCCACGACTCTTTCTTGGTTTGGGTCTTGATGGTGGACAGTATAAGGTTGTTTTGAGGGATCTTCTTCCCTGGGTTGTTGGTTTTCATATGATTTTGTGTTATGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.96

Weight (kDa)

9.78

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AjnI CCWGG 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 10
AlwI GGATC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 139
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 38, 137, 138
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 38, 137, 138
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 65
BspPI GGATC 1 cut(s) 135
BssECI CCNNGG 3 cut(s) 38, 137, 138
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 38
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 38
CviAII CATG 2 cut(s) 15, 39
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 18, 42
FaiI YATR 6 cut(s) 16, 40, 111, 156, 158, 171
FatI CATG 2 cut(s) 14, 38
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 18, 42
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 2 cut(s) 18, 42
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 3 cut(s) 31, 124, 151
Lsp1109I GCAGC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 122, 125
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 10
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 2 cut(s) 68, 117
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 156
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 18, 42
NmuCI GTSAC 1 cut(s) 23
PasI CCCWGGG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 127
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 10
SetI ASST 1 cut(s) 117
SgeI CNNG 9 cut(s) 23, 27, 51, 58, 84, 95, 107, 150, 151
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 108
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.