Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001843.1

Orthogroup ID

OG0017588

Physical Location & Seq

Genomic Coordinates Forward (+)

45356 .. 47389

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001843.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgaaagctgtggtagctgtgataagaaagtgcaaggcacttaccaagccacaatgctttcttggtatgggtctctatggtggagagtatggtgttgttttgagggatcttatcccttgggttgttggatttcacatgatttgtgttctgggctttgattggcatcagatatacagtacggaattacttggtgttctgcttccggcgtcacatcggcggctcttcgaggtcggaggcgcgaggtgtaagctttttggctgtgtgaagatggtccttgagaatgttgaggagatgtggactgaggtcccaaaaattgccaaggacaagaagaaagtgcaaccagttaacaaagatagattcatcagcaggatgtcctccgttgtgattctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034708 GO:0034709 GO:0034715 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

9.45

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25602
rosa_chinensis	RchiOBHm_Chr1g0348871 RchiOBHm_Chr2g0119471 RchiOBHm_Chr2g0121481 RchiOBHm_Chr2g0141001 RchiOBHm_Chr4g0431321 RchiOBHm_Chr6g0261061 RchiOBHm_Chr6g0288641
rosa_multiflora	Rmu_sc0001843.1_g000007 Rmu_sc0005816.1_g000036
rosa_roxburghii	Rroxscaffold_7G00156510 Rroxscaffold_7G00166100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	178
AluBI	AGCT	3 cut(s)	8, 17, 250
AluI	AGCT	3 cut(s)	8, 17, 250
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	271, 304
AvaII	GGWCC	2 cut(s)	271, 304
BccI	CCATC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	271, 304
BmgT120I	GGNCC	2 cut(s)	271, 304
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	172
BoxI	GACNNNNGTC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	116, 318
Bse1I	ACTGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	116, 318
BseGI	GGATG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	116, 318
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	116, 318
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	302
BstUI	CGCG	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	271, 304
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	7 cut(s)	8, 17, 49, 153, 220, 250, 258
CviKI_1	RGCY	7 cut(s)	8, 17, 49, 153, 220, 250, 258
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	116, 318
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	271, 304
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	116, 318
ErhI	CCWWGG	2 cut(s)	116, 318
FaeI	CATG	1 cut(s)	139
FaiI	YATR	5 cut(s)	68, 78, 90, 137, 172
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	218
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	218
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	357, 385
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	297, 346
Hpy188I	TCNGA	2 cut(s)	168, 233
Hpy8I	GTNNAC	2 cut(s)	297, 346
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	33, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	237
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	134, 216, 352, 354
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	214, 277, 340
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	2 cut(s)	182, 312
MmeI	TCCRAC	2 cut(s)	106, 211
MnlI	CCTC	7 cut(s)	96, 220, 227, 234, 280, 295, 385
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	357, 385
PkrI	GCNGC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	271, 304
PspPPI	RGGWCCY	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	271, 304
SetI	ASST	6 cut(s)	10, 19, 231, 245, 252, 306
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	2 cut(s)	271, 304
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	182, 312
SsiI	CCGC	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	116, 318
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	182, 312
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	357, 385
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	17, 349
TspGWI	ACGGA	2 cut(s)	194, 367
VpaK11BI	GGWCC	2 cut(s)	271, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.