Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

18718383 .. 18719243

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCAGGGAGAGCAAGACCAACCGCAACAACATAACAATCAAGACGAAAAGGTAAACCAACAACAACAACAACATGGACAACAACACCACCATGAACCTCAAAAGTGTCCGAGGTGCGAGTCTCACAACACCAAGTTCTGCTACTACAATAACTACAGCCTTTCCCAGCCCCGCTACTTCTGCAAGGCGTGTAGGAGGTACTGGACCCAGGGTGGGACCCTCCGAAATGTCCCTGTCGGTGGGGGCTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCCACATCATCCTCTCGCTCGGTGTTTATCCAACCGCACCAACAACCACAAGACCACCATCAAAGGTCATTGATGATGTCATCAGGGCCATCAGCTACCCTGAACTCTCTACCTGGCTCCCAATACTATCTAGGTGGTGCTGGGTATTTGACATCTATGCCTTTTAGTCAAAACATCACCCATCTTGGGGGTTCTAGCCAATTGGGTTTAGGTGGTGGTGCTTCAAATTTGGGGTTACTTCATGGCTTCAATGCCATCCCTTCCTCTGGCCAACGTCACATGCAAAACCATCTTTTTAGGAGCAACATGGAGCCTTCAACTCTGTACCCATCTAAGGATCATCGAGGCATGTTACTTCAACCAACCAGGTCGAGTGGTGTTATGACTGATTGGCATGAGAGCTTCATTAGCAAATCTCATGCTTCTACTACTAATGTTGTAGTCTCAACTGGTCAAAACGCTATGTGGAGTGCCACCATTGGAAACAACACTGGTACCACTAGCAGTGCTGATGCTTCTATAAACTCAACTCAGTGGTCTGATGATCTTACCAGATCTTTTGCCCCCGGCCCCCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

287

Amino Acids

31.5

Weight (kDa)

9.41

Isoelectric Point (pI)

60.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 88	2.5e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	773
AciI	CCGC	3 cut(s)	23, 172, 314
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	3 cut(s)	200, 605, 775
AfiI	CCNNNNNNNGG	6 cut(s)	213, 239, 465, 466, 545, 613
AgsI	TTSAA	4 cut(s)	504, 529, 597, 638
AjnI	CCWGG	3 cut(s)	207, 391, 644
AluBI	AGCT	2 cut(s)	374, 681
AluI	AGCT	2 cut(s)	374, 681
Alw26I	GTCTC	2 cut(s)	126, 727
AlwI	GGATC	1 cut(s)	624
AoxI	GGCC	3 cut(s)	365, 547, 847
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	773
AspS9I	GGNCC	4 cut(s)	204, 216, 365, 848
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	204, 216
BaeI	ACNNNNGTAYC	2 cut(s)	757, 790
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	773
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	6 cut(s)	345, 376, 468, 542, 576, 616
BciT130I	CCWGG	3 cut(s)	209, 393, 646
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	126, 727
BfaI	CTAG	3 cut(s)	410, 474, 780
BfmI	CTRYAG	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	833
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	4 cut(s)	209, 393, 646, 846
Bme18I	GGWCC	2 cut(s)	204, 216
BmgT120I	GGNCC	4 cut(s)	204, 216, 365, 848
BmiI	GGNNCC	7 cut(s)	206, 217, 218, 397, 591, 775, 850
BmrFI	CCNGG	4 cut(s)	209, 393, 646, 846
BmsI	GCATC	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	110, 207, 208, 844
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 239, 465, 466, 545, 613
Bse1I	ACTGG	3 cut(s)	206, 733, 775
BseBI	CCWGG	3 cut(s)	209, 393, 646
BseDI	CCNNGG	4 cut(s)	110, 207, 208, 844
BseGI	GGATG	2 cut(s)	287, 534
BseLI	CCNNNNNNNGG	6 cut(s)	213, 239, 465, 466, 545, 613
BseMII	CTCAG	1 cut(s)	824
BseNI	ACTGG	3 cut(s)	206, 733, 775
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	165, 419
BshFI	GGCC	3 cut(s)	367, 549, 849
BshNI	GGYRCC	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	250, 846
BslFI	GGGAC	2 cut(s)	215, 229
BslI	CCNNNNNNNGG	6 cut(s)	213, 239, 465, 466, 545, 613
BsmAI	GTCTC	2 cut(s)	126, 727
BsmFI	GGGAC	2 cut(s)	215, 229
BsnI	GGCC	3 cut(s)	367, 549, 849
Bsp143I	GATC	3 cut(s)	616, 823, 833
BspACI	CCGC	3 cut(s)	23, 172, 314
BspANI	GGCC	3 cut(s)	367, 549, 849
BspCNI	CTCAG	1 cut(s)	823
BspLI	GGNNCC	7 cut(s)	206, 217, 218, 397, 591, 775, 850
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	773
BsrI	ACTGG	3 cut(s)	206, 733, 775
BssECI	CCNNGG	4 cut(s)	110, 207, 208, 844
BssMI	GATC	3 cut(s)	616, 823, 833
Bst2UI	CCWGG	3 cut(s)	209, 393, 646
BstC8I	GCNNGC	2 cut(s)	260, 264
BstDEI	CTNAG	3 cut(s)	612, 810, 855
BstF5I	GGATG	2 cut(s)	287, 534
BstKTI	GATC	3 cut(s)	619, 826, 836
BstMAI	GTCTC	2 cut(s)	126, 727
BstMBI	GATC	3 cut(s)	616, 823, 833
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 180, 255, 687
BstNI	CCWGG	3 cut(s)	209, 393, 646
BstNSI	RCATGY	2 cut(s)	562, 631
BstSCI	CCNGG	4 cut(s)	207, 391, 644, 844
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	367, 549, 849
BtsCI	GGATG	2 cut(s)	287, 534
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	3 cut(s)	768, 790, 818
Cac8I	GCNNGC	2 cut(s)	260, 264
Cfr13I	GGNCC	4 cut(s)	204, 216, 365, 848
CsiI	ACCWGGT	1 cut(s)	644
Csp6I	GTAC	3 cut(s)	199, 604, 774
CviAII	CATG	9 cut(s)	74, 92, 274, 521, 559, 586, 628, 674, 698
CviQI	GTAC	3 cut(s)	199, 604, 774
DdeI	CTNAG	3 cut(s)	612, 810, 855
DpnI	GATC	3 cut(s)	618, 825, 835
DpnII	GATC	3 cut(s)	616, 823, 833
EaeI	YGGCCR	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	204, 216
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	207, 391, 644
FaeI	CATG	9 cut(s)	77, 95, 277, 524, 562, 589, 631, 677, 701
FaqI	GGGAC	2 cut(s)	215, 229
FatI	CATG	9 cut(s)	73, 91, 273, 520, 558, 585, 627, 673, 697
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	2 cut(s)	274, 521
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	3 cut(s)	410, 474, 780
GluI	GCNGC	1 cut(s)	247
GsaI	CCCAGC	2 cut(s)	169, 423
HaeIII	GGCC	3 cut(s)	367, 549, 849
HapII	CCGG	2 cut(s)	250, 846
Hin1II	CATG	9 cut(s)	77, 95, 277, 524, 562, 589, 631, 677, 701
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	250, 846
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	111, 224, 820
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	549, 603
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	4, 183, 562
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 180, 255, 687
HpyF3I	CTNAG	3 cut(s)	612, 810, 855
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	9 cut(s)	77, 95, 277, 524, 562, 589, 631, 677, 701
KflI	GGGWCCC	1 cut(s)	216
KpnI	GGTACC	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	616, 823, 833
LmnI	GCTCC	3 cut(s)	401, 579, 589
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	781
MabI	ACCWGGT	1 cut(s)	644
MaeI	CTAG	3 cut(s)	410, 474, 780
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	513, 554, 630
MalI	GATC	3 cut(s)	618, 825, 835
MboI	GATC	3 cut(s)	616, 823, 833
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	833
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	2 cut(s)	479, 505
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	8 cut(s)	105, 108, 189, 230, 289, 301, 553, 617
Mox20I	TGGCCA	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	2 cut(s)	250, 846
MspR9I	CCNGG	4 cut(s)	209, 393, 646, 846
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	3 cut(s)	209, 393, 646
MwoI	GCNNNNNNNGC	4 cut(s)	10, 180, 255, 687
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	616, 823, 833
NlaIII	CATG	9 cut(s)	77, 95, 277, 524, 562, 589, 631, 677, 701
NlaIV	GGNNCC	7 cut(s)	206, 217, 218, 397, 591, 775, 850
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	2 cut(s)	562, 631
PasI	CCCWGGG	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	207, 391, 644
PspFI	CCCAGC	2 cut(s)	165, 419
PspGI	CCWGG	3 cut(s)	207, 391, 644
PspN4I	GGNNCC	7 cut(s)	206, 217, 218, 397, 591, 775, 850
PspPI	GGNCC	4 cut(s)	204, 216, 365, 848
PspPPI	RGGWCCY	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	833
PsyI	GACNNNGTC	1 cut(s)	274
RsaI	GTAC	3 cut(s)	200, 605, 775
RsaNI	GTAC	3 cut(s)	199, 604, 774
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	3 cut(s)	616, 823, 833
Sau96I	GGNCC	4 cut(s)	204, 216, 365, 848
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	4 cut(s)	209, 393, 646, 846
SexAI	ACCWGGT	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	204, 216
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	479, 505
SsiI	CCGC	3 cut(s)	23, 172, 314
SspMI	CTAG	3 cut(s)	410, 474, 780
StyD4I	CCNGG	4 cut(s)	207, 391, 644, 844
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	2 cut(s)	622, 650
TasI	AATT	2 cut(s)	479, 505
TscAI	CASTG	3 cut(s)	775, 790, 818
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	108, 509, 673
TspRI	CASTG	3 cut(s)	775, 790, 818
Tth111I	GACNNNGTC	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	204, 216
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	2 cut(s)	562, 631
XspI	CTAG	3 cut(s)	410, 474, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.