Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

5214086 .. 5216324

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAAGGAGAGCAAGACCACCAGCAACACAACAATCAAGACCGGAAGGTAAACCAGCAGCAACGGCAACAAGGACAACAACAACAACATCATGAGCCTCAAAAGTGTCCGAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTATCCCAGCCCCGCTACTTCTGCAAGGCGTGTAGGAGGTACTGGACCCAGGGTGGCACCCTCCGGAACGTCCCCGTCGGTGGGGGTTGCCGGAAAGGCAAGCGTGCCAAGACAATGTCCTCGTCATCATCAGCCACCTCCTCTCACTCGGTGCTTCAGCCGCAGCAGCAGCCACAAGACCACCAGCTGCATGAGAGGGCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGTCTGGCTCCCAGTACTACTCTGGTGGTGCTGGGTATTTGACATCTATGCCCTTCACTCAAAACCTCGACCATCTTGGGGGTTCTGGACAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGACAGAGTCAGATGCAAAGCCAGCTTCTTAAGAGCATGGAGACTCCACCTCTGTACCCATCTGAGGATCATCGAGGTCTGTTGCTTCAACCAGGTATGCCAAGTGGTTCTATGACTGATTGGCCTAAGTTCATCAACAAATCTCATTCTTCTGCTTCCGCTGCTGCAGCCTCAACTGGTCATAGCGCTCCGTGGAGCACCACCATGGGCAACAATACCAGCACCAGCAGCGGTAAAGTTGGCTCTTCTCTGAACTCATCCCAGCGGCCTGATGATCATGCCGCATCTTTTTCCACTGGACTTCCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

289

Amino Acids

31.13

Weight (kDa)

9.35

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 88	2.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	6 cut(s)	172, 320, 714, 786, 820, 837
AclWI	GGATC	2 cut(s)	502, 630
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	3 cut(s)	200, 413, 611
AfeI	AGCGCT	1 cut(s)	742
AfiI	CCNNNNNNNGG	4 cut(s)	239, 240, 475, 619
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	513, 538, 644
AjnI	CCWGG	2 cut(s)	207, 646
AluBI	AGCT	3 cut(s)	346, 383, 580
AluI	AGCT	3 cut(s)	346, 383, 580
Alw21I	GWGCWC	1 cut(s)	755
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	2 cut(s)	502, 630
Aor13HI	TCCGGA	1 cut(s)	222
Aor51HI	AGCGCT	1 cut(s)	742
AoxI	GGCC	3 cut(s)	377, 677, 821
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	2 cut(s)	204, 377
AvaII	GGWCC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BanI	GGYRCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	755
BccI	CCATC	3 cut(s)	477, 551, 622
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	209, 648
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	154, 720
BfoI	RGCGCY	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	255
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	209, 648
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	204, 377
BmiI	GGNNCC	3 cut(s)	206, 217, 406
BmrFI	CCNGG	2 cut(s)	209, 648
BmrI	ACTGGG	2 cut(s)	403, 856
BmsI	GCATC	2 cut(s)	558, 848
BmuI	ACTGGG	2 cut(s)	403, 856
BsaJI	CCNNGG	5 cut(s)	110, 207, 208, 746, 759
BsaWI	WCCGGW	2 cut(s)	42, 222
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 240, 475, 619
Bse1I	ACTGG	5 cut(s)	206, 409, 736, 856, 862
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	209, 648
BseDI	CCNNGG	5 cut(s)	110, 207, 208, 746, 759
BseGI	GGATG	1 cut(s)	812
BseLI	CCNNNNNNNGG	4 cut(s)	239, 240, 475, 619
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	5 cut(s)	206, 409, 736, 856, 862
BseRI	GAGGAG	1 cut(s)	289
BseYI	CCCAGC	3 cut(s)	165, 428, 816
BshFI	GGCC	3 cut(s)	379, 679, 823
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	755
BsiSI	CCGG	3 cut(s)	43, 223, 250
BslFI	GGGAC	3 cut(s)	106, 215, 534
BslI	CCNNNNNNNGG	4 cut(s)	239, 240, 475, 619
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	3 cut(s)	106, 215, 534
BsnI	GGCC	3 cut(s)	379, 679, 823
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	494, 622, 829
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	6 cut(s)	172, 320, 714, 786, 820, 837
BspANI	GGCC	3 cut(s)	379, 679, 823
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	206, 217, 406
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	2 cut(s)	502, 630
BspQI	GCTCTTC	1 cut(s)	805
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	584
BsrI	ACTGG	5 cut(s)	206, 409, 736, 856, 862
BssECI	CCNNGG	5 cut(s)	110, 207, 208, 746, 759
BssMI	GATC	3 cut(s)	494, 622, 829
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	209, 648
Bst6I	CTCTTC	2 cut(s)	553, 805
BstAFI	CTTAAG	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	260, 264, 381, 578
BstDEI	CTNAG	2 cut(s)	618, 681
BstDSI	CCRYGG	2 cut(s)	746, 759
BstF5I	GGATG	1 cut(s)	812
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	3 cut(s)	497, 625, 832
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	3 cut(s)	494, 622, 829
BstNI	CCWGG	2 cut(s)	209, 648
BstSCI	CCNGG	2 cut(s)	207, 646
BstSFI	CTRYAG	2 cut(s)	154, 720
BsuRI	GGCC	3 cut(s)	379, 679, 823
BtgI	CCRYGG	2 cut(s)	746, 759
BtsCI	GGATG	1 cut(s)	812
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	4 cut(s)	260, 264, 381, 578
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	204, 377
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	199, 412, 610
CviAII	CATG	6 cut(s)	92, 350, 530, 592, 760, 833
CviQI	GTAC	3 cut(s)	199, 412, 610
DdeI	CTNAG	2 cut(s)	618, 681
DpnI	GATC	3 cut(s)	496, 624, 831
DpnII	GATC	3 cut(s)	494, 622, 829
DraIII	CACNNNGTG	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	553, 805
EarI	CTCTTC	2 cut(s)	553, 805
Eco130I	CCWWGG	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	204
Eco47III	AGCGCT	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	207, 646
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	6 cut(s)	95, 353, 533, 595, 763, 836
FaqI	GGGAC	3 cut(s)	106, 215, 534
FatI	CATG	6 cut(s)	91, 349, 529, 591, 759, 832
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	829
FokI	GGATG	1 cut(s)	799
GlaI	GCGC	1 cut(s)	742
GsaI	CCCAGC	3 cut(s)	169, 432, 820
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	379, 679, 823
HapII	CCGG	3 cut(s)	43, 223, 250
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	6 cut(s)	95, 353, 533, 595, 763, 836
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	119, 562, 598
HpaII	CCGG	3 cut(s)	43, 223, 250
Hpy166II	GTNNAC	2 cut(s)	52, 372
Hpy188I	TCNGA	4 cut(s)	111, 567, 619, 807
Hpy188III	TCNNGA	4 cut(s)	38, 92, 223, 483
Hpy8I	GTNNAC	2 cut(s)	52, 372
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	40, 460
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	4, 183, 349, 571, 722
HpyF3I	CTNAG	2 cut(s)	618, 681
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	95, 353, 533, 595, 763, 836
HspAI	GCGC	1 cut(s)	741
Kpn2I	TCCGGA	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	494, 622, 829
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	3 cut(s)	410, 748, 750
LweI	GCATC	2 cut(s)	558, 848
MabI	ACCWGGT	1 cut(s)	646
MaeII	ACGT	1 cut(s)	228
MalI	GATC	3 cut(s)	496, 624, 831
MboI	GATC	3 cut(s)	494, 622, 829
MboII	GAAGA	3 cut(s)	540, 696, 792
MfeI	CAATTG	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	2 cut(s)	488, 514
MlyI	GAGTC	3 cut(s)	128, 571, 592
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	758
MspA1I	CMGCKG	5 cut(s)	346, 383, 716, 786, 820
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	3 cut(s)	43, 223, 250
MspR9I	CCNGG	2 cut(s)	209, 648
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	209, 648
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	3 cut(s)	494, 622, 829
NlaIII	CATG	6 cut(s)	95, 353, 533, 595, 763, 836
NlaIV	GGNNCC	3 cut(s)	206, 217, 406
PagI	TCATGA	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	805
PflFI	GACNNNGTC	2 cut(s)	274, 561
PleI	GAGTC	3 cut(s)	127, 570, 592
PpsI	GAGTC	3 cut(s)	127, 570, 592
Psp6I	CCWGG	2 cut(s)	207, 646
PspFI	CCCAGC	3 cut(s)	165, 428, 816
PspGI	CCWGG	2 cut(s)	207, 646
PspN4I	GGNNCC	3 cut(s)	206, 217, 406
PspPI	GGNCC	2 cut(s)	204, 377
PstI	CTGCAG	1 cut(s)	724
PsyI	GACNNNGTC	2 cut(s)	274, 561
PvuII	CAGCTG	2 cut(s)	346, 383
RsaI	GTAC	3 cut(s)	200, 413, 611
RsaNI	GTAC	3 cut(s)	199, 412, 610
RseI	CAYNNNNRTG	1 cut(s)	758
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	1 cut(s)	585
Sau3AI	GATC	3 cut(s)	494, 622, 829
Sau96I	GGNCC	2 cut(s)	204, 377
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	3 cut(s)	128, 571, 592
ScrFI	CCNGG	2 cut(s)	209, 648
SduI	GDGCHC	1 cut(s)	755
SexAI	ACCWGGT	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	558, 848
SfcI	CTRYAG	2 cut(s)	154, 720
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	488, 514
SsiI	CCGC	6 cut(s)	172, 320, 714, 786, 820, 837
StyD4I	CCNGG	2 cut(s)	207, 646
StyI	CCWWGG	1 cut(s)	759
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	465, 628
TasI	AATT	2 cut(s)	488, 514
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	3 cut(s)	322, 823, 839
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	856
TspDTI	ATGAA	2 cut(s)	518, 676
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	1 cut(s)	856
Tth111I	GACNNNGTC	2 cut(s)	274, 561
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.