Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Forward (+)

6566750 .. 6568101

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGGGAGAGCGAGACCAGCAGCAGCAGAACAACCAAGACCGGAAGGTGAACCAGCAGCAGCAACAGGGACAACAGCAACCGCAGCAGCATCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGGTACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGTTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCATCATCATCAGCCACCTCATCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGCCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCTCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAGCCTCAACCATCTTGGGGGTTCTGGTCAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGTTGCAAAGCCAGCTTTTTAAGGGCAACATGGAGCCTCCACCTCTGTACCCATCTGAGGATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCTTCTGCGGCTGCAGCCTCAGCTGGTCAAAGCGCTCTGTGGAGCACCACCATGGGGCACAACACCAGCACCGCCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCCGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

297

Amino Acids

32.02

Weight (kDa)

9.48

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 91	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	9 cut(s)	83, 181, 329, 335, 341, 746, 810, 816, 876
AclWI	GGATC	3 cut(s)	520, 651, 874
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	4 cut(s)	209, 431, 445, 632
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
AgsI	TTSAA	3 cut(s)	531, 556, 665
AjnI	CCWGG	2 cut(s)	436, 671
AluBI	AGCT	5 cut(s)	401, 598, 708, 761, 842
AluI	AGCT	5 cut(s)	401, 598, 708, 761, 842
Alw21I	GWGCWC	1 cut(s)	785
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	520, 651, 874
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	9 cut(s)	374, 395, 574, 652, 674, 698, 823, 848, 880
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	4 cut(s)	225, 395, 824, 881
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	798
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	785
BbvCI	CCTCAGC	1 cut(s)	757
BccI	CCATC	3 cut(s)	495, 569, 643
BciT130I	CCWGG	2 cut(s)	438, 673
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	163, 750
BfoI	RGCGCY	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	438, 673
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	4 cut(s)	225, 395, 824, 881
BmiI	GGNNCC	4 cut(s)	226, 227, 424, 618
BmrFI	CCNGG	2 cut(s)	438, 673
BmrI	ACTGGG	2 cut(s)	421, 456
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	2 cut(s)	421, 456
Bpu10I	CCTNAGC	1 cut(s)	757
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	119, 789
BsaWI	WCCGGW	2 cut(s)	42, 231
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	4 cut(s)	215, 361, 427, 451
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	438, 673
BseDI	CCNNGG	2 cut(s)	119, 789
BseLI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
BseMII	CTCAG	6 cut(s)	122, 630, 693, 771, 852, 857
BseNI	ACTGG	4 cut(s)	215, 361, 427, 451
BseRI	GAGGAG	1 cut(s)	876
BseSI	GKGCMC	1 cut(s)	798
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	2 cut(s)	220, 840
BshFI	GGCC	9 cut(s)	376, 397, 576, 654, 676, 700, 825, 850, 882
BsiHKAI	GWGCWC	1 cut(s)	785
BsiSI	CCGG	5 cut(s)	43, 232, 259, 864, 879
BslFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
BslI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
BsnI	GGCC	9 cut(s)	376, 397, 576, 654, 676, 700, 825, 850, 882
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	785, 798
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	512, 643, 866
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	9 cut(s)	83, 181, 329, 335, 341, 746, 810, 816, 876
BspANI	GGCC	9 cut(s)	376, 397, 576, 654, 676, 700, 825, 850, 882
BspCNI	CTCAG	6 cut(s)	121, 631, 694, 770, 851, 856
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	226, 227, 424, 618
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	3 cut(s)	520, 651, 874
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	4 cut(s)	215, 361, 427, 451
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	119, 789
BssMI	GATC	3 cut(s)	512, 643, 866
BssT1I	CCWWGG	2 cut(s)	119, 789
Bst2UI	CCWGG	2 cut(s)	438, 673
Bst6I	CTCTTC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstDEI	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
BstDSI	CCRYGG	1 cut(s)	789
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	3 cut(s)	515, 646, 869
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	512, 643, 866
BstNI	CCWGG	2 cut(s)	438, 673
BstSCI	CCNGG	2 cut(s)	436, 671
BstSFI	CTRYAG	2 cut(s)	163, 750
BstSLI	GKGCMC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
BsuRI	GGCC	9 cut(s)	376, 397, 576, 654, 676, 700, 825, 850, 882
BtgI	CCRYGG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	225, 395, 824, 881
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	208, 430, 444, 631
CviAII	CATG	6 cut(s)	101, 283, 548, 613, 725, 790
CviQI	GTAC	4 cut(s)	208, 430, 444, 631
DdeI	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
DpnI	GATC	3 cut(s)	514, 645, 868
DpnII	GATC	3 cut(s)	512, 643, 866
DraIII	CACNNNGTG	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	119, 789
Eco147I	AGGCCT	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	225, 824
EcoRII	CCWGG	2 cut(s)	436, 671
EcoT14I	CCWWGG	2 cut(s)	119, 789
ErhI	CCWWGG	2 cut(s)	119, 789
FaeI	CATG	6 cut(s)	104, 286, 551, 616, 728, 793
FaiI	YATR	9 cut(s)	102, 284, 464, 549, 573, 614, 689, 726, 791
FaqI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
FatI	CATG	6 cut(s)	100, 282, 547, 612, 724, 789
FauI	CCCGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	772
GsaI	CCCAGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	9 cut(s)	376, 397, 576, 654, 676, 700, 825, 850, 882
HapII	CCGG	5 cut(s)	43, 232, 259, 864, 879
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	104, 286, 551, 616, 728, 793
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	5 cut(s)	43, 232, 259, 864, 879
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	52, 390
Hpy188I	TCNGA	3 cut(s)	111, 640, 834
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	52, 390
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	40, 837
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	4, 192, 201, 367, 589, 752, 821
HpyF3I	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	6 cut(s)	104, 286, 551, 616, 728, 793
HspAI	GCGC	1 cut(s)	771
KflI	GGGWCCC	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	878
KroNI	GCCGGC	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	512, 643, 866
LmnI	GCTCC	3 cut(s)	428, 616, 780
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	514, 645, 868
MboI	GATC	3 cut(s)	512, 643, 866
MboII	GAAGA	1 cut(s)	558
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	2 cut(s)	785, 798
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	2 cut(s)	506, 532
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	878
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	3 cut(s)	401, 761, 816
MspI	CCGG	5 cut(s)	43, 232, 259, 864, 879
MspR9I	CCNGG	2 cut(s)	438, 673
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	2 cut(s)	438, 673
NaeI	GCCGGC	1 cut(s)	880
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	512, 643, 866
NgoMIV	GCCGGC	1 cut(s)	878
NlaIII	CATG	6 cut(s)	104, 286, 551, 616, 728, 793
NlaIV	GGNNCC	4 cut(s)	226, 227, 424, 618
PceI	AGGCCT	1 cut(s)	654
PdiI	GCCGGC	1 cut(s)	880
PflFI	GACNNNGTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	436, 671
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	436, 671
PspN4I	GGNNCC	4 cut(s)	226, 227, 424, 618
PspPI	GGNCC	4 cut(s)	225, 395, 824, 881
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	866
PsyI	GACNNNGTC	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	401, 761
RsaI	GTAC	4 cut(s)	209, 431, 445, 632
RsaNI	GTAC	4 cut(s)	208, 430, 444, 631
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	603
Sau3AI	GATC	3 cut(s)	512, 643, 866
Sau96I	GGNCC	4 cut(s)	225, 395, 824, 881
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	438, 673
SduI	GDGCHC	2 cut(s)	785, 798
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	163, 750
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	2 cut(s)	506, 532
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	9 cut(s)	83, 181, 329, 335, 341, 746, 810, 816, 876
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	436, 671
StyI	CCWWGG	2 cut(s)	119, 789
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	649
TasI	AATT	2 cut(s)	506, 532
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	5 cut(s)	331, 337, 343, 749, 878
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	851
TspDTI	ATGAA	2 cut(s)	536, 700
TspRI	CASTG	1 cut(s)	851
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.