Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150765 .. 5153287

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGGGAGAGCGAGACCAGCAGCAGCAGAACAACCAAGACCGGAAGGTGAACCAGCAGCAGCAACAGGGACAACAGCAACCGCAGCAGCAGCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGATACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGTTGCCGGAAAGGCAAGCGTGCCAAGACTATGTCCTCATCATCATCAGCCACCTCCTCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGTCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCTCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAGCCTCAACCATCTTGGGGGTTCTGGTCAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGATGCAAAGCCATCTTTTTAAGGGCAACATGGAGCCTCCACCTCTGTACCCATCTGAGGATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCTTCTGCGGCTGCAGCCTCAGCTGGTCAAAGCGCTCTGTGGAGCACCACCATGGGGCACAACACCAGCACCACCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCCGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

297

Amino Acids

32.05

Weight (kDa)

9.48

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 91	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	8 cut(s)	83, 181, 329, 335, 341, 746, 816, 876
AclWI	GGATC	3 cut(s)	520, 651, 874
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	431, 445, 632
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
AgsI	TTSAA	3 cut(s)	531, 556, 665
AjnI	CCWGG	2 cut(s)	436, 671
AluBI	AGCT	4 cut(s)	401, 708, 761, 842
AluI	AGCT	4 cut(s)	401, 708, 761, 842
Alw21I	GWGCWC	1 cut(s)	785
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	520, 651, 874
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	8 cut(s)	395, 574, 652, 674, 698, 823, 848, 880
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	4 cut(s)	225, 395, 824, 881
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	798
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	785
BbvCI	CCTCAGC	1 cut(s)	757
BccI	CCATC	4 cut(s)	495, 569, 603, 643
BciT130I	CCWGG	2 cut(s)	438, 673
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	163, 750
BfoI	RGCGCY	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	438, 673
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	4 cut(s)	225, 395, 824, 881
BmiI	GGNNCC	4 cut(s)	226, 227, 424, 618
BmrFI	CCNGG	2 cut(s)	438, 673
BmrI	ACTGGG	2 cut(s)	421, 456
BmsI	GCATC	1 cut(s)	576
BmuI	ACTGGG	2 cut(s)	421, 456
Bpu10I	CCTNAGC	1 cut(s)	757
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	119, 789
BsaWI	WCCGGW	2 cut(s)	42, 231
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	4 cut(s)	215, 361, 427, 451
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	438, 673
BseDI	CCNNGG	2 cut(s)	119, 789
BseLI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
BseMII	CTCAG	6 cut(s)	122, 630, 693, 771, 852, 857
BseNI	ACTGG	4 cut(s)	215, 361, 427, 451
BseRI	GAGGAG	2 cut(s)	298, 876
BseSI	GKGCMC	1 cut(s)	798
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	2 cut(s)	220, 840
BshFI	GGCC	8 cut(s)	397, 576, 654, 676, 700, 825, 850, 882
BsiHKAI	GWGCWC	1 cut(s)	785
BsiSI	CCGG	5 cut(s)	43, 232, 259, 864, 879
BslFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
BslI	CCNNNNNNNGG	5 cut(s)	248, 249, 493, 640, 792
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
BsnI	GGCC	8 cut(s)	397, 576, 654, 676, 700, 825, 850, 882
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	785, 798
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	512, 643, 866
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	8 cut(s)	83, 181, 329, 335, 341, 746, 816, 876
BspANI	GGCC	8 cut(s)	397, 576, 654, 676, 700, 825, 850, 882
BspCNI	CTCAG	6 cut(s)	121, 631, 694, 770, 851, 856
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	226, 227, 424, 618
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	3 cut(s)	520, 651, 874
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	4 cut(s)	215, 361, 427, 451
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	119, 789
BssMI	GATC	3 cut(s)	512, 643, 866
BssT1I	CCWWGG	2 cut(s)	119, 789
Bst2UI	CCWGG	2 cut(s)	438, 673
Bst6I	CTCTTC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	8 cut(s)	199, 269, 273, 399, 421, 578, 823, 880
BstDEI	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
BstDSI	CCRYGG	1 cut(s)	789
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	3 cut(s)	515, 646, 869
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	512, 643, 866
BstNI	CCWGG	2 cut(s)	438, 673
BstSCI	CCNGG	2 cut(s)	436, 671
BstSFI	CTRYAG	2 cut(s)	163, 750
BstSLI	GKGCMC	1 cut(s)	798
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
BsuRI	GGCC	8 cut(s)	397, 576, 654, 676, 700, 825, 850, 882
BtgI	CCRYGG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	851
Cac8I	GCNNGC	8 cut(s)	199, 269, 273, 399, 421, 578, 823, 880
CfoI	GCGC	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	225, 395, 824, 881
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	430, 444, 631
CviAII	CATG	5 cut(s)	101, 548, 613, 725, 790
CviQI	GTAC	3 cut(s)	430, 444, 631
DdeI	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
DpnI	GATC	3 cut(s)	514, 645, 868
DpnII	GATC	3 cut(s)	512, 643, 866
DraIII	CACNNNGTG	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	119, 789
Eco147I	AGGCCT	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	225, 824
EcoRII	CCWGG	2 cut(s)	436, 671
EcoT14I	CCWWGG	2 cut(s)	119, 789
ErhI	CCWWGG	2 cut(s)	119, 789
FaeI	CATG	5 cut(s)	104, 551, 616, 728, 793
FaiI	YATR	9 cut(s)	102, 284, 464, 549, 573, 614, 689, 726, 791
FaqI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 552
FatI	CATG	5 cut(s)	100, 547, 612, 724, 789
FauI	CCCGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	772
GsaI	CCCAGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	8 cut(s)	397, 576, 654, 676, 700, 825, 850, 882
HapII	CCGG	5 cut(s)	43, 232, 259, 864, 879
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	5 cut(s)	104, 551, 616, 728, 793
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	5 cut(s)	43, 232, 259, 864, 879
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	52, 390
Hpy188I	TCNGA	4 cut(s)	111, 585, 640, 834
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	52, 390
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	40, 837
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	4, 192, 201, 367, 589, 752, 821
HpyF3I	CTNAG	7 cut(s)	108, 639, 702, 757, 838, 843, 888
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	104, 551, 616, 728, 793
HspAI	GCGC	1 cut(s)	771
KflI	GGGWCCC	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	878
KroNI	GCCGGC	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	512, 643, 866
LmnI	GCTCC	3 cut(s)	428, 616, 780
LweI	GCATC	1 cut(s)	576
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	514, 645, 868
MboI	GATC	3 cut(s)	512, 643, 866
MboII	GAAGA	1 cut(s)	558
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	2 cut(s)	785, 798
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	2 cut(s)	506, 532
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	878
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	3 cut(s)	401, 761, 816
MspI	CCGG	5 cut(s)	43, 232, 259, 864, 879
MspR9I	CCNGG	2 cut(s)	438, 673
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	2 cut(s)	438, 673
NaeI	GCCGGC	1 cut(s)	880
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	512, 643, 866
NgoMIV	GCCGGC	1 cut(s)	878
NlaIII	CATG	5 cut(s)	104, 551, 616, 728, 793
NlaIV	GGNNCC	4 cut(s)	226, 227, 424, 618
PceI	AGGCCT	1 cut(s)	654
PdiI	GCCGGC	1 cut(s)	880
PflFI	GACNNNGTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	436, 671
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	436, 671
PspN4I	GGNNCC	4 cut(s)	226, 227, 424, 618
PspPI	GGNCC	4 cut(s)	225, 395, 824, 881
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	866
PsyI	GACNNNGTC	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	401, 761
RsaI	GTAC	3 cut(s)	431, 445, 632
RsaNI	GTAC	3 cut(s)	430, 444, 631
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	603
Sau3AI	GATC	3 cut(s)	512, 643, 866
Sau96I	GGNCC	4 cut(s)	225, 395, 824, 881
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	438, 673
SduI	GDGCHC	2 cut(s)	785, 798
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	2 cut(s)	163, 750
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	2 cut(s)	506, 532
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	8 cut(s)	83, 181, 329, 335, 341, 746, 816, 876
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	436, 671
StyI	CCWWGG	2 cut(s)	119, 789
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	649
TasI	AATT	2 cut(s)	506, 532
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	5 cut(s)	331, 337, 343, 749, 878
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	851
TspDTI	ATGAA	2 cut(s)	536, 700
TspRI	CASTG	1 cut(s)	851
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.