Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Forward (+)

6716709 .. 6717593

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAGGGAGATCGAGACCAGCAGCAGCACAACAACCAAGACGGGAAGGTGAACCAGCAGCAGCAACAGGGACAACAGCAACCGCAGCAGCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGGTACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGCTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCGTCATCATCAGCCACCTCCTCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGCCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCCCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAACCTCAACCATCTTGGGGGTTCTGGTCAACTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGATGCAAGCCCAGCTTTTTAAGGGCAACATGGAGCCTCCACCTCTGTACCCATCTGAGAATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCATCTTCTGCTGCAGCCTCAGCTGGTCAAAGCGCTCTGTGGAGCACCACCATGGGGCACAACACCAGCACCACCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCTGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

295

Amino Acids

31.63

Weight (kDa)

9.49

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	35 - 90	2.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	6 cut(s)	83, 178, 326, 332, 807, 867
AclWI	GGATC	2 cut(s)	511, 865
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	206, 422, 436, 623
AfeI	AGCGCT	1 cut(s)	763
AfiI	CCNNNNNNNGG	4 cut(s)	245, 246, 484, 783
AgsI	TTSAA	3 cut(s)	522, 547, 656
AjnI	CCWGG	2 cut(s)	427, 662
AluBI	AGCT	5 cut(s)	392, 589, 699, 752, 833
AluI	AGCT	5 cut(s)	392, 589, 699, 752, 833
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	511, 865
Aor13HI	TCCGGA	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	763
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	764
AspS9I	GGNCC	5 cut(s)	222, 386, 413, 815, 872
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	789
BaeI	ACNNNNGTAYC	2 cut(s)	605, 638
BalI	TGGCCA	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	776
BbvCI	CCTCAGC	1 cut(s)	748
BccI	CCATC	3 cut(s)	486, 560, 634
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	429, 664
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	160, 741
BfoI	RGCGCY	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	261
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	429, 664
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	5 cut(s)	222, 386, 413, 815, 872
BmiI	GGNNCC	4 cut(s)	223, 224, 415, 609
BmrFI	CCNGG	2 cut(s)	429, 664
BmrI	ACTGGG	3 cut(s)	412, 447, 509
BmsI	GCATC	2 cut(s)	567, 740
BmuI	ACTGGG	3 cut(s)	412, 447, 509
Bpu10I	CCTNAGC	1 cut(s)	748
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	116, 780
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 246, 484, 783
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	5 cut(s)	212, 352, 418, 442, 504
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	429, 664
BseDI	CCNNGG	2 cut(s)	116, 780
BseLI	CCNNNNNNNGG	4 cut(s)	245, 246, 484, 783
BseMII	CTCAG	6 cut(s)	119, 621, 684, 762, 843, 848
BseNI	ACTGG	5 cut(s)	212, 352, 418, 442, 504
BseRI	GAGGAG	2 cut(s)	295, 867
BseSI	GKGCMC	1 cut(s)	789
BseYI	CCCAGC	2 cut(s)	171, 585
BsgI	GTGCAG	2 cut(s)	217, 831
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	3 cut(s)	229, 256, 870
BslFI	GGGAC	6 cut(s)	84, 112, 154, 221, 235, 543
BslI	CCNNNNNNNGG	4 cut(s)	245, 246, 484, 783
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	6 cut(s)	84, 112, 154, 221, 235, 543
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	776, 789
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	10, 503, 857
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	6 cut(s)	83, 178, 326, 332, 807, 867
BspCNI	CTCAG	6 cut(s)	118, 622, 685, 761, 842, 847
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	223, 224, 415, 609
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	2 cut(s)	511, 865
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	869
BsrI	ACTGG	5 cut(s)	212, 352, 418, 442, 504
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	2 cut(s)	116, 780
BssMI	GATC	3 cut(s)	10, 503, 857
BssT1I	CCWWGG	2 cut(s)	116, 780
Bst2UI	CCWGG	2 cut(s)	429, 664
Bst6I	CTCTTC	1 cut(s)	562
BstAPI	GCANNNNNTGC	2 cut(s)	195, 737
BstC8I	GCNNGC	9 cut(s)	196, 266, 270, 390, 412, 569, 582, 814, 871
BstDEI	CTNAG	7 cut(s)	105, 630, 693, 748, 829, 834, 879
BstDSI	CCRYGG	1 cut(s)	780
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	1 cut(s)	764
BstKTI	GATC	3 cut(s)	13, 506, 860
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	10, 503, 857
BstNI	CCWGG	2 cut(s)	429, 664
BstSCI	CCNGG	2 cut(s)	427, 662
BstSFI	CTRYAG	2 cut(s)	160, 741
BstSLI	GKGCMC	1 cut(s)	789
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	842
Cac8I	GCNNGC	9 cut(s)	196, 266, 270, 390, 412, 569, 582, 814, 871
CfoI	GCGC	1 cut(s)	764
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	5 cut(s)	222, 386, 413, 815, 872
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	4 cut(s)	205, 421, 435, 622
CviAII	CATG	6 cut(s)	98, 280, 539, 604, 716, 781
CviQI	GTAC	4 cut(s)	205, 421, 435, 622
DdeI	CTNAG	7 cut(s)	105, 630, 693, 748, 829, 834, 879
DpnI	GATC	3 cut(s)	12, 505, 859
DpnII	GATC	3 cut(s)	10, 503, 857
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	116, 780
Eco147I	AGGCCT	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	222, 815
EcoRII	CCWGG	2 cut(s)	427, 662
EcoT14I	CCWWGG	2 cut(s)	116, 780
ErhI	CCWWGG	2 cut(s)	116, 780
FaeI	CATG	6 cut(s)	101, 283, 542, 607, 719, 784
FaiI	YATR	9 cut(s)	99, 281, 455, 540, 564, 605, 680, 717, 782
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	6 cut(s)	84, 112, 154, 221, 235, 543
FatI	CATG	6 cut(s)	97, 279, 538, 603, 715, 780
FauI	CCCGC	1 cut(s)	185
GlaI	GCGC	1 cut(s)	763
GsaI	CCCAGC	2 cut(s)	175, 589
HaeII	RGCGCY	1 cut(s)	765
HapII	CCGG	3 cut(s)	229, 256, 870
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	764
Hin1II	CATG	6 cut(s)	101, 283, 542, 607, 719, 784
Hin6I	GCGC	1 cut(s)	762
HinP1I	GCGC	1 cut(s)	762
HincII	GTYRAC	2 cut(s)	381, 497
HindII	GTYRAC	2 cut(s)	381, 497
HinfI	GANTC	2 cut(s)	125, 634
HpaII	CCGG	3 cut(s)	229, 256, 870
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	52, 381, 497
Hpy188I	TCNGA	4 cut(s)	108, 576, 631, 825
Hpy188III	TCNNGA	2 cut(s)	14, 229
Hpy8I	GTNNAC	3 cut(s)	52, 381, 497
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	40, 828
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	8 cut(s)	4, 189, 198, 358, 580, 731, 743, 812
HpyF3I	CTNAG	7 cut(s)	105, 630, 693, 748, 829, 834, 879
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	101, 283, 542, 607, 719, 784
HspAI	GCGC	1 cut(s)	762
KflI	GGGWCCC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	869
KroNI	GCCGGC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	10, 503, 857
LmnI	GCTCC	2 cut(s)	607, 771
LweI	GCATC	2 cut(s)	567, 740
MaeII	ACGT	1 cut(s)	234
MalI	GATC	3 cut(s)	12, 505, 859
MboI	GATC	3 cut(s)	10, 503, 857
MboII	GAAGA	2 cut(s)	549, 726
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	776, 789
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	1 cut(s)	523
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	134
Mox20I	TGGCCA	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	869
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	3 cut(s)	392, 752, 807
MspI	CCGG	3 cut(s)	229, 256, 870
MspR9I	CCNGG	2 cut(s)	429, 664
MvaI	CCWGG	2 cut(s)	429, 664
NaeI	GCCGGC	1 cut(s)	871
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	10, 503, 857
NgoMIV	GCCGGC	1 cut(s)	869
NlaIII	CATG	6 cut(s)	101, 283, 542, 607, 719, 784
NlaIV	GGNNCC	4 cut(s)	223, 224, 415, 609
PceI	AGGCCT	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	871
PfeI	GAWTC	1 cut(s)	634
PflFI	GACNNNGTC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	427, 662
PspFI	CCCAGC	2 cut(s)	171, 585
PspGI	CCWGG	2 cut(s)	427, 662
PspN4I	GGNNCC	4 cut(s)	223, 224, 415, 609
PspPI	GGNCC	5 cut(s)	222, 386, 413, 815, 872
PspPPI	RGGWCCY	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	857
PsyI	GACNNNGTC	1 cut(s)	280
PvuII	CAGCTG	2 cut(s)	392, 752
RsaI	GTAC	4 cut(s)	206, 422, 436, 623
RsaNI	GTAC	4 cut(s)	205, 421, 435, 622
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	10, 503, 857
Sau96I	GGNCC	5 cut(s)	222, 386, 413, 815, 872
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	429, 664
SduI	GDGCHC	2 cut(s)	776, 789
SfaNI	GCATC	2 cut(s)	567, 740
SfcI	CTRYAG	2 cut(s)	160, 741
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	1 cut(s)	523
SseBI	AGGCCT	1 cut(s)	645
SsiI	CCGC	6 cut(s)	83, 178, 326, 332, 807, 867
StuI	AGGCCT	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	427, 662
StyI	CCWWGG	2 cut(s)	116, 780
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	13, 640
TasI	AATT	1 cut(s)	523
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	3 cut(s)	328, 334, 869
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	842
TspDTI	ATGAA	2 cut(s)	527, 691
TspRI	CASTG	1 cut(s)	842
Tth111I	GACNNNGTC	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.