Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Forward (+)

5802728 .. 5804845

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCAGGGAGAGCGAGACCAGCAGCAGCAGAACAACCAAGAACGGAAGGTGAACCAGCAGCAGCAACAGGGACAACAGCAACCGCAGCAGCAGCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGGTACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGTTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCATCATCATCAGCCACCTCCTCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGCCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCTCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAGCCTCAACCATCTTGGGGGTTCTGGTCAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGATGCAAAGCCAGCTTTTTAAGGGCAACATGGAGCCTCCACCTCCGTACCCATCTGAGGATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCTTCTGCGGCTGCAGCCTCAGCTGGTCAAAGCGCTCTGTGGACCACCACCATGGGGCACAACACCAGCACCACCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCCGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

295

Amino Acids

31.84

Weight (kDa)

9.48

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 91	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	7 cut(s)	83, 181, 329, 335, 740, 810, 870
AclWI	GGATC	3 cut(s)	514, 645, 868
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	308
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	4 cut(s)	209, 425, 439, 626
AfeI	AGCGCT	1 cut(s)	766
AfiI	CCNNNNNNNGG	5 cut(s)	248, 249, 487, 634, 786
AgsI	TTSAA	3 cut(s)	525, 550, 659
AjnI	CCWGG	2 cut(s)	430, 665
AluBI	AGCT	5 cut(s)	395, 592, 702, 755, 836
AluI	AGCT	5 cut(s)	395, 592, 702, 755, 836
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	514, 645, 868
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	766
AoxI	GGCC	9 cut(s)	368, 389, 568, 646, 668, 692, 817, 842, 874
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	767
AspS9I	GGNCC	5 cut(s)	225, 389, 774, 818, 875
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	225, 774
BaeGI	GKGCMC	1 cut(s)	792
BaeI	ACNNNNGTAYC	2 cut(s)	608, 641
BalI	TGGCCA	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	751
BccI	CCATC	3 cut(s)	489, 563, 637
BciT130I	CCWGG	2 cut(s)	432, 667
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	163, 744
BfoI	RGCGCY	1 cut(s)	768
BglI	GCCNNNNNGGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	432, 667
Bme18I	GGWCC	2 cut(s)	225, 774
BmgT120I	GGNCC	5 cut(s)	225, 389, 774, 818, 875
BmiI	GGNNCC	4 cut(s)	226, 227, 418, 612
BmrFI	CCNGG	2 cut(s)	432, 667
BmrI	ACTGGG	2 cut(s)	415, 450
BmsI	GCATC	1 cut(s)	570
BmuI	ACTGGG	2 cut(s)	415, 450
Bpu10I	CCTNAGC	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	119, 783
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 249, 487, 634, 786
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	4 cut(s)	215, 355, 421, 445
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	432, 667
BseDI	CCNNGG	2 cut(s)	119, 783
BseLI	CCNNNNNNNGG	5 cut(s)	248, 249, 487, 634, 786
BseMII	CTCAG	6 cut(s)	122, 624, 687, 765, 846, 851
BseNI	ACTGG	4 cut(s)	215, 355, 421, 445
BseRI	GAGGAG	2 cut(s)	298, 870
BseSI	GKGCMC	1 cut(s)	792
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	2 cut(s)	220, 834
BshFI	GGCC	9 cut(s)	370, 391, 570, 648, 670, 694, 819, 844, 876
BsiSI	CCGG	4 cut(s)	232, 259, 858, 873
BslFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 546
BslI	CCNNNNNNNGG	5 cut(s)	248, 249, 487, 634, 786
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 546
BsnI	GGCC	9 cut(s)	370, 391, 570, 648, 670, 694, 819, 844, 876
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	506, 637, 860
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	7 cut(s)	83, 181, 329, 335, 740, 810, 870
BspANI	GGCC	9 cut(s)	370, 391, 570, 648, 670, 694, 819, 844, 876
BspCNI	CTCAG	6 cut(s)	121, 625, 688, 764, 845, 850
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	226, 227, 418, 612
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	3 cut(s)	514, 645, 868
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	872
BsrI	ACTGG	4 cut(s)	215, 355, 421, 445
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	2 cut(s)	119, 783
BssMI	GATC	3 cut(s)	506, 637, 860
BssT1I	CCWWGG	2 cut(s)	119, 783
Bst2UI	CCWGG	2 cut(s)	432, 667
Bst6I	CTCTTC	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	9 cut(s)	199, 269, 273, 393, 415, 572, 590, 817, 874
BstDEI	CTNAG	7 cut(s)	108, 633, 696, 751, 832, 837, 882
BstDSI	CCRYGG	1 cut(s)	783
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	767
BstKTI	GATC	3 cut(s)	509, 640, 863
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	506, 637, 860
BstNI	CCWGG	2 cut(s)	432, 667
BstSCI	CCNGG	2 cut(s)	430, 665
BstSFI	CTRYAG	2 cut(s)	163, 744
BstSLI	GKGCMC	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	860
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	860
BsuRI	GGCC	9 cut(s)	370, 391, 570, 648, 670, 694, 819, 844, 876
BtgI	CCRYGG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	9 cut(s)	199, 269, 273, 393, 415, 572, 590, 817, 874
CfoI	GCGC	1 cut(s)	767
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	5 cut(s)	225, 389, 774, 818, 875
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	4 cut(s)	208, 424, 438, 625
CviAII	CATG	6 cut(s)	101, 283, 542, 607, 719, 784
CviQI	GTAC	4 cut(s)	208, 424, 438, 625
DdeI	CTNAG	7 cut(s)	108, 633, 696, 751, 832, 837, 882
DpnI	GATC	3 cut(s)	508, 639, 862
DpnII	GATC	3 cut(s)	506, 637, 860
DraIII	CACNNNGTG	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	119, 783
Eco147I	AGGCCT	1 cut(s)	648
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	225, 774
Eco47III	AGCGCT	1 cut(s)	766
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	225, 818
EcoRII	CCWGG	2 cut(s)	430, 665
EcoT14I	CCWWGG	2 cut(s)	119, 783
ErhI	CCWWGG	2 cut(s)	119, 783
FaeI	CATG	6 cut(s)	104, 286, 545, 610, 722, 787
FaiI	YATR	9 cut(s)	102, 284, 458, 543, 567, 608, 683, 720, 785
FaqI	GGGAC	6 cut(s)	84, 115, 157, 224, 238, 546
FatI	CATG	6 cut(s)	100, 282, 541, 606, 718, 783
FauI	CCCGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	766
GsaI	CCCAGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	9 cut(s)	370, 391, 570, 648, 670, 694, 819, 844, 876
HapII	CCGG	4 cut(s)	232, 259, 858, 873
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	767
Hin1II	CATG	6 cut(s)	104, 286, 545, 610, 722, 787
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	4 cut(s)	232, 259, 858, 873
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	52, 384, 774
Hpy188I	TCNGA	4 cut(s)	111, 579, 634, 828
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	52, 384, 774
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	40, 831
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	4, 192, 201, 361, 583, 746, 815
HpyF3I	CTNAG	7 cut(s)	108, 633, 696, 751, 832, 837, 882
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	6 cut(s)	104, 286, 545, 610, 722, 787
HspAI	GCGC	1 cut(s)	765
KflI	GGGWCCC	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	872
KroNI	GCCGGC	1 cut(s)	874
Kzo9I	GATC	3 cut(s)	506, 637, 860
LmnI	GCTCC	2 cut(s)	422, 610
LweI	GCATC	1 cut(s)	570
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	508, 639, 862
MboI	GATC	3 cut(s)	506, 637, 860
MboII	GAAGA	1 cut(s)	552
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	1 cut(s)	792
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	2 cut(s)	500, 526
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	872
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	782
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	3 cut(s)	395, 755, 810
MspI	CCGG	4 cut(s)	232, 259, 858, 873
MspR9I	CCNGG	2 cut(s)	432, 667
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	432, 667
NaeI	GCCGGC	1 cut(s)	874
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	3 cut(s)	506, 637, 860
NgoMIV	GCCGGC	1 cut(s)	872
NlaIII	CATG	6 cut(s)	104, 286, 545, 610, 722, 787
NlaIV	GGNNCC	4 cut(s)	226, 227, 418, 612
PceI	AGGCCT	1 cut(s)	648
PdiI	GCCGGC	1 cut(s)	874
PflFI	GACNNNGTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	430, 665
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	430, 665
PspN4I	GGNNCC	4 cut(s)	226, 227, 418, 612
PspPI	GGNCC	5 cut(s)	225, 389, 774, 818, 875
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	860
PsyI	GACNNNGTC	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	395, 755
RsaI	GTAC	4 cut(s)	209, 425, 439, 626
RsaNI	GTAC	4 cut(s)	208, 424, 438, 625
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	3 cut(s)	506, 637, 860
Sau96I	GGNCC	5 cut(s)	225, 389, 774, 818, 875
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	432, 667
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	2 cut(s)	163, 744
SinI	GGWCC	2 cut(s)	225, 774
SmiMI	CAYNNNNRTG	1 cut(s)	782
Sse9I	AATT	2 cut(s)	500, 526
SseBI	AGGCCT	1 cut(s)	648
SsiI	CCGC	7 cut(s)	83, 181, 329, 335, 740, 810, 870
StuI	AGGCCT	1 cut(s)	648
StyD4I	CCNGG	2 cut(s)	430, 665
StyI	CCWWGG	2 cut(s)	119, 783
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	643
TasI	AATT	2 cut(s)	500, 526
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	4 cut(s)	331, 337, 743, 872
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	845
TspDTI	ATGAA	2 cut(s)	530, 694
TspGWI	ACGGA	2 cut(s)	58, 612
TspRI	CASTG	1 cut(s)	845
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	225, 774
XapI	RAATTY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.