Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

33418803 .. 33419618

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1265700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACACCAAGTTCTGCTACTACAACAACTATAGTCTCTCTCAGCCACGGTACTTTTGCAAGGCGTGTAGGAGGTACTGGACTCAGGGCGGGACCCTCAGGAACGTCCCCGTCGGCGGCGGATGCCGGAAGATGAAGCGCGCCAAGGGTGGTTCCTCCTCGGCGTCAGCATCTCGGACCGTGCAGCCGCAGCCATCACAGAAAGAGCAGGACATGCAGAACACTCTGGGAATTGGCGGCGACTCCGTTGGGATGTCCACGGAAAACCCGAGCGGTGGTTTGGCTGTTCACCATCAGTACTACCCTGGTGCTTCTCATGGGTACTTGTCATCTCTTGCAGGGCTTCAATCTCTGAATCAATCTCAGCCGTTCAATGTTGGGGGTGGTCATGATCCTGCCTCGAACATGAGCCTGCTGCAGGGGTTCAATCTCCCAGCTCCTGCGTGGAATGGTCAGATGGTTCAGTCGCAACCACAGCAGCAGCGCAGTGAGCGGCGGTGTGCAGCAATCTCTGGCAGCCTGCTCTTCTTCACCACCGTTAGCTCTCCCCTTCTGCCCATCAGTTCCAAGCAGCAACGGCGACGGCAAAGTCTCCGACATCAAGGTTGCACCGCTCTTCTCTTGCCTCCTCCTCCGTCTCTTGCCTCGCAACTGCCAGCAATTTCAAAGACCGCTGTCAAACGACTAGCCGGCCGAGAAGCTCTTCCTCAAGCTCCAGCTCAAGTTCATCCGCTCCGCTGCCTGCAAAATCCCCTACCCATCACCCAAATTTATACAAAAAAAAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

264

Amino Acids

28.53

Weight (kDa)

10.3

Isoelectric Point (pI)

80.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	1 - 47	5.5e-28	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	588
AccBSI	CCGCTC	4 cut(s)	273, 493, 614, 733
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	4 cut(s)	53, 77, 299, 323
AfiI	CCNNNNNNNGG	3 cut(s)	116, 275, 418
AgsI	TTSAA	4 cut(s)	347, 373, 427, 666
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	5 cut(s)	437, 543, 701, 713, 719
AluI	AGCT	5 cut(s)	437, 543, 701, 713, 719
Alw26I	GTCTC	3 cut(s)	41, 596, 642
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	9 cut(s)	184, 190, 415, 478, 481, 503, 516, 571, 738
ApoI	RAATTY	1 cut(s)	768
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	3 cut(s)	141, 143, 486
AspS9I	GGNCC	2 cut(s)	93, 177
AsuHPI	GGTGA	3 cut(s)	281, 523, 754
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	93, 177
AxyI	CCTNAGG	1 cut(s)	98
BbvI	GCAGC	9 cut(s)	196, 202, 402, 490, 493, 515, 528, 583, 725
BccI	CCATC	5 cut(s)	202, 300, 451, 566, 767
BceAI	ACGGC	3 cut(s)	352, 593, 599
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	41, 596, 642
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	31, 416
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	2 cut(s)	93, 177
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	93, 177
BmiI	GGNNCC	3 cut(s)	94, 95, 154
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	113, 179
BoxI	GACNNNNGTC	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	693, 705
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	47, 144, 159, 258, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 275, 418
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	47, 144, 159, 258, 304
BseGI	GGATG	3 cut(s)	128, 258, 727
BseLI	CCNNNNNNNGG	3 cut(s)	116, 275, 418
BseMII	CTCAG	4 cut(s)	56, 98, 112, 377
BseNI	ACTGG	1 cut(s)	83
BsePI	GCGCGC	1 cut(s)	139
BseRI	GAGGAG	3 cut(s)	148, 618, 621
BseX3I	CGGCCG	1 cut(s)	691
BseXI	GCAGC	9 cut(s)	196, 202, 402, 490, 493, 515, 528, 583, 725
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	2 cut(s)	203, 522
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	694
BshFI	GGCC	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	127, 690
BslFI	GGGAC	2 cut(s)	92, 106
BslI	CCNNNNNNNGG	3 cut(s)	116, 275, 418
BsmAI	GTCTC	3 cut(s)	41, 596, 642
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	2 cut(s)	92, 106
BsnI	GGCC	1 cut(s)	693
BsoBI	CYCGRG	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	4 cut(s)	55, 97, 111, 376
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	94, 95, 154
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	3 cut(s)	530, 621, 708
BsrBI	CCGCTC	4 cut(s)	273, 493, 614, 733
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	5 cut(s)	47, 144, 159, 258, 304
BssHII	GCGCGC	1 cut(s)	139
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	51, 181, 538
Bst6I	CTCTTC	3 cut(s)	530, 621, 708
BstACI	GRCGYC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	6 cut(s)	141, 413, 521, 657, 691, 743
BstDEI	CTNAG	4 cut(s)	42, 84, 98, 363
BstDSI	CCRYGG	2 cut(s)	47, 258
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	128, 258, 727
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	141, 143, 486
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	3 cut(s)	41, 596, 642
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	1 cut(s)	694
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 190, 214, 475, 490, 577
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	217
BstPAI	GACNNNNGTC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	31, 416
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	9 cut(s)	196, 202, 402, 490, 493, 515, 528, 583, 725
BstZI	CGGCCG	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	693
BtgI	CCRYGG	2 cut(s)	47, 258
BtsCI	GGATG	3 cut(s)	128, 258, 727
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	6 cut(s)	141, 413, 521, 657, 691, 743
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	3 cut(s)	141, 143, 486
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	93, 177
CpoI	CGGWCCG	1 cut(s)	177
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	4 cut(s)	52, 76, 298, 322
CspI	CGGWCCG	1 cut(s)	177
CviAII	CATG	4 cut(s)	214, 317, 389, 406
CviQI	GTAC	4 cut(s)	52, 76, 298, 322
DdeI	CTNAG	4 cut(s)	42, 84, 98, 363
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DrdI	GACNNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	691
EagI	CGGCCG	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	530, 621, 708
EarI	CTCTTC	3 cut(s)	530, 621, 708
EciI	GGCGGA	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	93, 177
Eco52I	CGGCCG	1 cut(s)	691
Eco81I	CCTNAGG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	4 cut(s)	217, 320, 392, 409
FaiI	YATR	7 cut(s)	33, 215, 318, 390, 407, 774, 790
FaqI	GGGAC	2 cut(s)	92, 106
FatI	CATG	4 cut(s)	213, 316, 388, 405
FauI	CCCGC	1 cut(s)	83
FokI	GGATG	3 cut(s)	135, 265, 714
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	3 cut(s)	140, 142, 485
GsaI	CCCAGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	2 cut(s)	127, 690
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	3 cut(s)	141, 143, 486
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	217, 320, 392, 409
Hin6I	GCGC	3 cut(s)	139, 141, 484
HinP1I	GCGC	3 cut(s)	139, 141, 484
HinfI	GANTC	3 cut(s)	82, 242, 355
HpaII	CCGG	2 cut(s)	127, 690
HphI	GGTGA	3 cut(s)	281, 523, 754
Hpy166II	GTNNAC	2 cut(s)	258, 289
Hpy188I	TCNGA	4 cut(s)	177, 354, 456, 596
Hpy188III	TCNNGA	2 cut(s)	100, 389
Hpy8I	GTNNAC	2 cut(s)	258, 289
Hpy99I	CGWCG	2 cut(s)	116, 585
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	3 cut(s)	51, 181, 538
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	8 cut(s)	60, 184, 217, 338, 418, 503, 609, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 190, 214, 475, 490, 577
HpyF3I	CTNAG	4 cut(s)	42, 84, 98, 363
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	217, 320, 392, 409
HspAI	GCGC	3 cut(s)	139, 141, 484
KflI	GGGWCCC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	689
KroNI	GCCGGC	1 cut(s)	691
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	3 cut(s)	530, 621, 708
LmnI	GCTCC	3 cut(s)	442, 718, 738
Lsp1109I	GCAGC	9 cut(s)	196, 202, 402, 490, 493, 515, 528, 583, 725
LweI	GCATC	2 cut(s)	113, 179
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	4 cut(s)	273, 493, 614, 733
MboI	GATC	1 cut(s)	391
MboII	GAAGA	5 cut(s)	142, 517, 520, 608, 695
MluCI	AATT	3 cut(s)	231, 660, 768
MlyI	GAGTC	2 cut(s)	76, 236
MmeI	TCCRAC	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	702
MspA1I	CMGCKG	2 cut(s)	674, 738
MspI	CCGG	2 cut(s)	127, 690
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	6 cut(s)	123, 190, 214, 475, 490, 577
NaeI	GCCGGC	1 cut(s)	691
NdeII	GATC	1 cut(s)	391
NgoMIV	GCCGGC	1 cut(s)	689
NlaIII	CATG	4 cut(s)	217, 320, 392, 409
NlaIV	GGNNCC	3 cut(s)	94, 95, 154
NmeAIII	GCCGAG	2 cut(s)	140, 719
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	388
PauI	GCGCGC	1 cut(s)	139
PciSI	GCTCTTC	3 cut(s)	530, 621, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	76, 236
PpsI	GAGTC	2 cut(s)	76, 236
PpuMI	RGGWCCY	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	94, 95, 154
PspPI	GGNCC	2 cut(s)	93, 177
PspPPI	RGGWCCY	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	440
PteI	GCGCGC	1 cut(s)	139
RsaI	GTAC	4 cut(s)	53, 77, 299, 323
RsaNI	GTAC	4 cut(s)	52, 76, 298, 322
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SapI	GCTCTTC	3 cut(s)	530, 621, 708
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	93, 177
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	2 cut(s)	76, 236
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	8 cut(s)	77, 108, 439, 545, 607, 703, 715, 721
SfaNI	GCATC	2 cut(s)	113, 179
SfcI	CTRYAG	2 cut(s)	31, 416
SinI	GGWCC	2 cut(s)	93, 177
SmlI	CTYRAG	2 cut(s)	708, 720
SmoI	CTYRAG	2 cut(s)	708, 720
Sse9I	AATT	3 cut(s)	231, 660, 768
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	51, 181, 538
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	231, 660, 768
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	4 cut(s)	120, 190, 240, 496
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	9 cut(s)	184, 190, 415, 478, 481, 503, 516, 571, 738
TspDTI	ATGAA	3 cut(s)	17, 149, 716
TspGWI	ACGGA	3 cut(s)	235, 275, 624
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	93, 177
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	768
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.