Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

89030328 .. 89032551

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAGGGAGAGCGAGACCAGCAGCAGCACAACAACCAAGACCGGAAGGTGAACCAACAGCAGCAACAGGGACAACAGCAGCAACAGGGACAACAGCAACAGGGACAACAGCAGCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGGTACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGCTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCGTCATCATCAGCCACCTCCTCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGCCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCTCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAACCTCAACCATCTTGGGGGTTCTGGTCAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGATGCAAAGCCAGCTTTTTAAGGGCAACATGGAGCCTCCACCTCTGTACCCATCTGAGGATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCTTCTGCGGCTGCAGCCTCAGCTGGTCAAAGCGCTCTATGGAGCACCACCATGGGGCACAACACGAGCACCACCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCCGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

302

Amino Acids

32.65

Weight (kDa)

9.48

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	43 - 98	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	6 cut(s)	202, 350, 356, 761, 831, 891
AclWI	GGATC	3 cut(s)	535, 666, 889
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	4 cut(s)	230, 446, 460, 647
AfeI	AGCGCT	1 cut(s)	787
AfiI	CCNNNNNNNGG	5 cut(s)	269, 270, 508, 655, 807
AgsI	TTSAA	3 cut(s)	546, 571, 680
AjnI	CCWGG	2 cut(s)	451, 686
AluBI	AGCT	5 cut(s)	416, 613, 723, 776, 857
AluI	AGCT	5 cut(s)	416, 613, 723, 776, 857
Alw21I	GWGCWC	2 cut(s)	800, 824
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	535, 666, 889
Aor13HI	TCCGGA	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	787
AoxI	GGCC	9 cut(s)	389, 410, 589, 667, 689, 713, 838, 863, 895
ApoI	RAATTY	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	4 cut(s)	246, 410, 839, 896
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	813
BaeI	ACNNNNGTAYC	2 cut(s)	629, 662
BalI	TGGCCA	1 cut(s)	591
BauI	CACGAG	1 cut(s)	817
Bbv12I	GWGCWC	2 cut(s)	800, 824
BbvCI	CCTCAGC	1 cut(s)	772
BccI	CCATC	3 cut(s)	510, 584, 658
BciT130I	CCWGG	2 cut(s)	453, 688
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	184, 765
BfoI	RGCGCY	1 cut(s)	789
BglI	GCCNNNNNGGC	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	2 cut(s)	453, 688
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	4 cut(s)	246, 410, 839, 896
BmiI	GGNNCC	4 cut(s)	247, 248, 439, 633
BmrFI	CCNGG	2 cut(s)	453, 688
BmrI	ACTGGG	2 cut(s)	436, 471
BmsI	GCATC	1 cut(s)	591
BmuI	ACTGGG	2 cut(s)	436, 471
Bpu10I	CCTNAGC	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	140, 804
BsaWI	WCCGGW	2 cut(s)	42, 252
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 270, 508, 655, 807
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	4 cut(s)	236, 376, 442, 466
BseAI	TCCGGA	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	453, 688
BseDI	CCNNGG	2 cut(s)	140, 804
BseLI	CCNNNNNNNGG	5 cut(s)	269, 270, 508, 655, 807
BseMII	CTCAG	6 cut(s)	143, 645, 708, 786, 867, 872
BseNI	ACTGG	4 cut(s)	236, 376, 442, 466
BseRI	GAGGAG	2 cut(s)	319, 891
BseSI	GKGCMC	1 cut(s)	813
BseYI	CCCAGC	1 cut(s)	195
BsgI	GTGCAG	2 cut(s)	241, 855
BshFI	GGCC	9 cut(s)	391, 412, 591, 669, 691, 715, 840, 865, 897
BsiHKAI	GWGCWC	2 cut(s)	800, 824
BsiSI	CCGG	5 cut(s)	43, 253, 280, 879, 894
BslFI	GGGAC	8 cut(s)	84, 102, 117, 136, 178, 245, 259, 567
BslI	CCNNNNNNNGG	5 cut(s)	269, 270, 508, 655, 807
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	8 cut(s)	84, 102, 117, 136, 178, 245, 259, 567
BsnI	GGCC	9 cut(s)	391, 412, 591, 669, 691, 715, 840, 865, 897
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	800, 813, 824
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	527, 658, 881
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	6 cut(s)	202, 350, 356, 761, 831, 891
BspANI	GGCC	9 cut(s)	391, 412, 591, 669, 691, 715, 840, 865, 897
BspCNI	CTCAG	6 cut(s)	142, 646, 709, 785, 866, 871
BspEI	TCCGGA	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	247, 248, 439, 633
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	3 cut(s)	535, 666, 889
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	4 cut(s)	236, 376, 442, 466
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	2 cut(s)	140, 804
BssMI	GATC	3 cut(s)	527, 658, 881
BssSI	CACGAG	1 cut(s)	817
BssT1I	CCWWGG	2 cut(s)	140, 804
Bst2BI	CACGAG	1 cut(s)	817
Bst2UI	CCWGG	2 cut(s)	453, 688
Bst6I	CTCTTC	1 cut(s)	586
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	9 cut(s)	220, 290, 294, 414, 436, 593, 611, 838, 895
BstDEI	CTNAG	7 cut(s)	129, 654, 717, 772, 853, 858, 903
BstDSI	CCRYGG	1 cut(s)	804
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	3 cut(s)	530, 661, 884
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	527, 658, 881
BstNI	CCWGG	2 cut(s)	453, 688
BstSCI	CCNGG	2 cut(s)	451, 686
BstSFI	CTRYAG	2 cut(s)	184, 765
BstSLI	GKGCMC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	881
BsuRI	GGCC	9 cut(s)	391, 412, 591, 669, 691, 715, 840, 865, 897
BtgI	CCRYGG	1 cut(s)	804
BtsIMutI	CAGTG	1 cut(s)	866
Cac8I	GCNNGC	9 cut(s)	220, 290, 294, 414, 436, 593, 611, 838, 895
CfoI	GCGC	1 cut(s)	788
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	4 cut(s)	246, 410, 839, 896
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	229, 445, 459, 646
CviAII	CATG	6 cut(s)	122, 304, 563, 628, 740, 805
CviQI	GTAC	4 cut(s)	229, 445, 459, 646
DdeI	CTNAG	7 cut(s)	129, 654, 717, 772, 853, 858, 903
DpnI	GATC	3 cut(s)	529, 660, 883
DpnII	GATC	3 cut(s)	527, 658, 881
DraIII	CACNNNGTG	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	140, 804
Eco147I	AGGCCT	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	246, 839
EcoRII	CCWGG	2 cut(s)	451, 686
EcoT14I	CCWWGG	2 cut(s)	140, 804
ErhI	CCWWGG	2 cut(s)	140, 804
FaeI	CATG	6 cut(s)	125, 307, 566, 631, 743, 808
FaqI	GGGAC	8 cut(s)	84, 102, 117, 136, 178, 245, 259, 567
FatI	CATG	6 cut(s)	121, 303, 562, 627, 739, 804
FauI	CCCGC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	787
GsaI	CCCAGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	9 cut(s)	391, 412, 591, 669, 691, 715, 840, 865, 897
HapII	CCGG	5 cut(s)	43, 253, 280, 879, 894
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	788
Hin1II	CATG	6 cut(s)	125, 307, 566, 631, 743, 808
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	5 cut(s)	43, 253, 280, 879, 894
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	52, 405
Hpy188I	TCNGA	4 cut(s)	132, 600, 655, 849
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	52, 405
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	40, 852
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	7 cut(s)	4, 213, 222, 382, 604, 767, 836
HpyF3I	CTNAG	7 cut(s)	129, 654, 717, 772, 853, 858, 903
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	6 cut(s)	125, 307, 566, 631, 743, 808
HspAI	GCGC	1 cut(s)	786
KflI	GGGWCCC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	252
KroI	GCCGGC	1 cut(s)	893
KroNI	GCCGGC	1 cut(s)	895
Kzo9I	GATC	3 cut(s)	527, 658, 881
LmnI	GCTCC	3 cut(s)	443, 631, 795
LweI	GCATC	1 cut(s)	591
MaeII	ACGT	1 cut(s)	258
MalI	GATC	3 cut(s)	529, 660, 883
MboI	GATC	3 cut(s)	527, 658, 881
MboII	GAAGA	1 cut(s)	573
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	3 cut(s)	800, 813, 824
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	2 cut(s)	521, 547
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	252
MroNI	GCCGGC	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	803
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	3 cut(s)	416, 776, 831
MspI	CCGG	5 cut(s)	43, 253, 280, 879, 894
MspR9I	CCNGG	2 cut(s)	453, 688
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	453, 688
NaeI	GCCGGC	1 cut(s)	895
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	527, 658, 881
NgoMIV	GCCGGC	1 cut(s)	893
NlaIII	CATG	6 cut(s)	125, 307, 566, 631, 743, 808
NlaIV	GGNNCC	4 cut(s)	247, 248, 439, 633
PceI	AGGCCT	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	895
PflFI	GACNNNGTC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	451, 686
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	2 cut(s)	451, 686
PspN4I	GGNNCC	4 cut(s)	247, 248, 439, 633
PspPI	GGNCC	4 cut(s)	246, 410, 839, 896
PspPPI	RGGWCCY	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	881
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	2 cut(s)	416, 776
RsaI	GTAC	4 cut(s)	230, 446, 460, 647
RsaNI	GTAC	4 cut(s)	229, 445, 459, 646
RseI	CAYNNNNRTG	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	618
Sau3AI	GATC	3 cut(s)	527, 658, 881
Sau96I	GGNCC	4 cut(s)	246, 410, 839, 896
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	453, 688
SduI	GDGCHC	3 cut(s)	800, 813, 824
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	2 cut(s)	184, 765
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	803
Sse9I	AATT	2 cut(s)	521, 547
SseBI	AGGCCT	1 cut(s)	669
SsiI	CCGC	6 cut(s)	202, 350, 356, 761, 831, 891
StuI	AGGCCT	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	451, 686
StyI	CCWWGG	2 cut(s)	140, 804
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	664
TasI	AATT	2 cut(s)	521, 547
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	4 cut(s)	352, 358, 764, 893
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	866
TspDTI	ATGAA	2 cut(s)	551, 715
TspRI	CASTG	1 cut(s)	866
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.