Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Forward (+)

2392952 .. 2395306

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G050200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATCAGCAAAATCCAGATCAGAGGTTGAAGCCAACTTTACAGACTGAGAACCAGCAGCAGCAGCAGCAAAACCAGCAGCCTCAGAAGTGTCCTCGCTGTGAGTCTCTGAACACCAAGTTTTGCTATTACAACAATTACAGCCTCTCTCAGCCGCGCTACTTCTGCAAGACTTGTAGAAGGTATTGGACCCAAGGCGGGACCCTCAGGAACGTCCCTGTCGGCGGAGGCTGCCGGAAGGGGAAGCGTCCGAAGACTAATTCTTCATCATCATCATCTCCCTCTCTGCAGCCACAGTCGCAGGCACAGGCACCACAACAAGACCAGCAAACAGTGAAAAACTTGTCCACAACAAGCCCAAGTTCTAATCTTGGGGCTATAGAGAGCACTGGTAATTTGGCTTCTCACCATCAGTACTATCCTGGTGGTACTGGGTATTTGTCATCTTATGCAGCAATTCAATCTCTGAATCAGTCACAGCCCTTCAACGTTGGGGGCCATGATCAACTGGGAGGAGGTGCATCCTCAAATATGAGCCTGCTGCAGGGGTTCAATGTTTCAGCTCCTTTTGGCCAATTTTATCAAGCTGGCAACACTAAGAGCAGCATGGTGGATCAAACGGCTCTGTATCCATCTGATCAAGAGGGCTTATTGATTCAACCAACCAGGCCTTCTGCTTCTAGTGACCATGGCTGGCCTCATCAGAGCTTCAACATCAACAGATCATCTGCTAATGCTTCTTCTGCAGCTTCTGAAAGCGCTTTGTGGGCCACCACCACCTCTGGTAACATGAACACCACCACCACCACCAGCGCTGGGCCTTCTCTGAACCCAAACCAGTGGCCTGATCTACCTGGATCATATGGCCCTCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

293

Amino Acids

31.54

Weight (kDa)

9.01

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	1 cut(s)	157
AciI	CCGC	3 cut(s)	155, 198, 225
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	3 cut(s)	12, 621, 865
AcoI	YGGCCR	1 cut(s)	571
AfaI	GTAC	2 cut(s)	416, 430
AfeI	AGCGCT	2 cut(s)	760, 814
AfiI	CCNNNNNNNGG	4 cut(s)	198, 224, 544, 816
AgsI	TTSAA	6 cut(s)	31, 461, 487, 553, 659, 712
AjnI	CCWGG	3 cut(s)	421, 665, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AluBI	AGCT	4 cut(s)	563, 587, 708, 749
AluI	AGCT	4 cut(s)	563, 587, 708, 749
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	3 cut(s)	12, 621, 865
AlwNI	CAGNNNCTG	1 cut(s)	752
Aor51HI	AGCGCT	2 cut(s)	760, 814
AoxI	GGCC	8 cut(s)	496, 571, 668, 695, 768, 818, 842, 865
AspLEI	GCGC	3 cut(s)	159, 761, 815
AspS9I	GGNCC	6 cut(s)	189, 201, 496, 768, 818, 866
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	189, 201
AxyI	CCTNAGG	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	389
BccI	CCATC	2 cut(s)	417, 640
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	3 cut(s)	423, 667, 855
BciVI	GTATCC	1 cut(s)	639
BclI	TGATCA	2 cut(s)	502, 637
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	4 cut(s)	287, 378, 542, 744
BfoI	RGCGCY	2 cut(s)	762, 816
BfuI	GTATCC	1 cut(s)	639
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	3 cut(s)	423, 667, 855
Bme18I	GGWCC	2 cut(s)	189, 201
BmgT120I	GGNCC	6 cut(s)	189, 201, 496, 768, 818, 866
BmiI	GGNNCC	5 cut(s)	191, 202, 203, 312, 497
BmrFI	CCNGG	3 cut(s)	423, 667, 855
BmrI	ACTGGG	2 cut(s)	441, 518
BmsI	GCATC	1 cut(s)	530
BmuI	ACTGGG	2 cut(s)	441, 518
BpiI	GAAGAC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	193, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 224, 544, 816
Bse1I	ACTGG	4 cut(s)	394, 436, 513, 838
Bse21I	CCTNAGG	1 cut(s)	206
BseBI	CCWGG	3 cut(s)	423, 667, 855
BseDI	CCNNGG	2 cut(s)	193, 688
BseGI	GGATG	1 cut(s)	521
BseLI	CCNNNNNNNGG	4 cut(s)	198, 224, 544, 816
BseMII	CTCAG	4 cut(s)	39, 98, 164, 220
BseNI	ACTGG	4 cut(s)	394, 436, 513, 838
BseRI	GAGGAG	1 cut(s)	528
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	8 cut(s)	498, 573, 670, 697, 770, 820, 844, 867
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	200, 214
BslI	CCNNNNNNNGG	4 cut(s)	198, 224, 544, 816
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	200, 214
BsnI	GGCC	8 cut(s)	498, 573, 670, 697, 770, 820, 844, 867
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	3 cut(s)	155, 198, 225
BspANI	GGCC	8 cut(s)	498, 573, 670, 697, 770, 820, 844, 867
BspCNI	CTCAG	4 cut(s)	40, 97, 163, 219
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	5 cut(s)	191, 202, 203, 312, 497
BspMAI	CTGCAG	3 cut(s)	291, 546, 748
BspPI	GGATC	3 cut(s)	12, 621, 865
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	394, 436, 513, 838
BssECI	CCNNGG	2 cut(s)	193, 688
BssMI	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
BssT1I	CCWWGG	2 cut(s)	193, 688
Bst2UI	CCWGG	3 cut(s)	423, 667, 855
Bst4CI	ACNGT	2 cut(s)	297, 334
BstC8I	GCNNGC	4 cut(s)	303, 539, 589, 695
BstDEI	CTNAG	5 cut(s)	48, 84, 150, 206, 597
BstDSI	CCRYGG	1 cut(s)	688
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	521
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	2 cut(s)	762, 816
BstHHI	GCGC	3 cut(s)	159, 761, 815
BstKTI	GATC	8 cut(s)	7, 22, 505, 616, 640, 725, 850, 860
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
BstMWI	GCNNNNNNNGC	8 cut(s)	64, 67, 76, 165, 231, 298, 743, 767
BstNI	CCWGG	3 cut(s)	423, 667, 855
BstSCI	CCNGG	3 cut(s)	421, 665, 853
BstSFI	CTRYAG	4 cut(s)	287, 378, 542, 744
BstUI	CGCG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	840
Bsu36I	CCTNAGG	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	639
BsuRI	GGCC	8 cut(s)	498, 573, 670, 697, 770, 820, 844, 867
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	3 cut(s)	339, 387, 845
Cac8I	GCNNGC	4 cut(s)	303, 539, 589, 695
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	3 cut(s)	159, 761, 815
Cfr13I	GGNCC	6 cut(s)	189, 201, 496, 768, 818, 866
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	415, 429
CviAII	CATG	4 cut(s)	500, 607, 689, 790
CviQI	GTAC	2 cut(s)	415, 429
DdeI	CTNAG	5 cut(s)	48, 84, 150, 206, 597
DpnI	GATC	8 cut(s)	6, 21, 504, 615, 639, 724, 849, 859
DpnII	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
EaeI	YGGCCR	1 cut(s)	571
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	193, 688
Eco147I	AGGCCT	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	189, 201
Eco47III	AGCGCT	2 cut(s)	760, 814
Eco81I	CCTNAGG	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	421, 665, 853
EcoT14I	CCWWGG	2 cut(s)	193, 688
ErhI	CCWWGG	2 cut(s)	193, 688
FaeI	CATG	4 cut(s)	503, 610, 692, 793
FaiI	YATR	9 cut(s)	380, 450, 501, 533, 608, 690, 791, 862, 864
FaqI	GGGAC	2 cut(s)	200, 214
FatI	CATG	4 cut(s)	499, 606, 688, 789
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	2 cut(s)	502, 637
FokI	GGATG	1 cut(s)	508
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	3 cut(s)	158, 760, 814
GsaI	CCCAGC	1 cut(s)	819
HaeII	RGCGCY	2 cut(s)	762, 816
HaeIII	GGCC	8 cut(s)	498, 573, 670, 697, 770, 820, 844, 867
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	159, 761, 815
Hin1II	CATG	4 cut(s)	503, 610, 692, 793
Hin6I	GCGC	3 cut(s)	157, 759, 813
HinP1I	GCGC	3 cut(s)	157, 759, 813
HinfI	GANTC	3 cut(s)	104, 469, 655
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	9 cut(s)	24, 87, 111, 252, 468, 637, 705, 754, 828
Hpy188III	TCNNGA	3 cut(s)	17, 208, 641
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	5 cut(s)	174, 232, 493, 681, 831
HpyCH4III	ACNGT	2 cut(s)	297, 334
HpyCH4IV	ACGT	2 cut(s)	213, 489
HpyCH4V	TGCA	6 cut(s)	168, 289, 452, 521, 544, 746
HpyF10VI	GCNNNNNNNGC	8 cut(s)	64, 67, 76, 165, 231, 298, 743, 767
HpyF3I	CTNAG	5 cut(s)	48, 84, 150, 206, 597
HpySE526I	ACGT	2 cut(s)	213, 489
Hsp92II	CATG	4 cut(s)	503, 610, 692, 793
HspAI	GCGC	3 cut(s)	157, 759, 813
KflI	GGGWCCC	1 cut(s)	201
Ksp22I	TGATCA	2 cut(s)	502, 637
Kzo9I	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
LmnI	GCTCC	1 cut(s)	568
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	2 cut(s)	213, 489
MaeIII	GTNAC	3 cut(s)	474, 683, 785
MalI	GATC	8 cut(s)	6, 21, 504, 615, 639, 724, 849, 859
MboI	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
MboII	GAAGA	3 cut(s)	255, 265, 732
MhlI	GDGCHC	1 cut(s)	389
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	6 cut(s)	136, 259, 394, 456, 575, 874
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	573
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	423, 667, 855
MvaI	CCWGG	3 cut(s)	423, 667, 855
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	8 cut(s)	64, 67, 76, 165, 231, 298, 743, 767
NcoI	CCATGG	1 cut(s)	688
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
NlaIII	CATG	4 cut(s)	503, 610, 692, 793
NlaIV	GGNNCC	5 cut(s)	191, 202, 203, 312, 497
NmuCI	GTSAC	2 cut(s)	474, 683
PceI	AGGCCT	1 cut(s)	670
PfeI	GAWTC	2 cut(s)	469, 655
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	421, 665, 853
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	3 cut(s)	421, 665, 853
PspN4I	GGNNCC	5 cut(s)	191, 202, 203, 312, 497
PspPI	GGNCC	6 cut(s)	189, 201, 496, 768, 818, 866
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	3 cut(s)	291, 546, 748
PstNI	CAGNNNCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	416, 430
RsaNI	GTAC	2 cut(s)	415, 429
Sau3AI	GATC	8 cut(s)	4, 19, 502, 613, 637, 722, 847, 857
Sau96I	GGNCC	6 cut(s)	189, 201, 496, 768, 818, 866
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	423, 667, 855
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	4 cut(s)	287, 378, 542, 744
SinI	GGWCC	2 cut(s)	189, 201
Sse9I	AATT	6 cut(s)	136, 259, 394, 456, 575, 874
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	3 cut(s)	155, 198, 225
SspMI	CTAG	1 cut(s)	681
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	3 cut(s)	421, 665, 853
StyI	CCWWGG	2 cut(s)	193, 688
TaaI	ACNGT	2 cut(s)	297, 334
TaiI	ACGT	2 cut(s)	216, 492
TasI	AATT	6 cut(s)	136, 259, 394, 456, 575, 874
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	469, 655
TscAI	CASTG	3 cut(s)	339, 394, 845
TseFI	GTSAC	2 cut(s)	474, 683
Tsp45I	GTSAC	2 cut(s)	474, 683
TspDTI	ATGAA	2 cut(s)	255, 806
TspRI	CASTG	3 cut(s)	339, 394, 845
VpaK11BI	GGWCC	2 cut(s)	189, 201
XagI	CCTNNNNNAGG	1 cut(s)	542
XspI	CTAG	1 cut(s)	681
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.