Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

29443742 .. 29444620

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCAGCAACAGCAGCAGGAGGGAGGTGAGCAGAAGGAGCAGCAGAACCAGGATCAGCGGTTGAAGGCGGCGGAGCAGCAGAACCAGCAGCCGCACAGGTGCCCGCGGTGCCAGTCCATGAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCACGGTACTTTTGCAAGGCGTGTAGGAGGTACTGGACTCAGGGCGGGACCCTCCGGAACGTCCCCGTCGGCGGCGGATGCCGGAAGGGGAAGCGCGCCAAGGGGGGTTCCTCCTCGGCGTCAGCATCTCGGACCGTGCAGCCGCAGCCACCACAGAAAGAGCAGAACGTGCAGAACAATTTGGGAATTGGCGGCGGGTCCGTGGGGATGTCTACGGCGAACCCGAGCGGTGGATTGGCTATTCACCATCAGTACTACCCTGGTTCTTCTCATGGGTACTTGTCACCTTTTGCAGGGCTTCAATCTCTGAGTCAATCTCAGCCGTTCAATGTTGGGGGCGGTCATGATCCTGCCTCGAACATGAGCCTGCTGCAGGGGTTCAATCTCTCAGTTCCTATGGTGGCGTTGCAGCCGCAGCAACGTCAGCAGTTTTTTCAGATGGGCGGCTCCAGGAGCAACAATCTGTTGGATCAAGCTGCTCTGTACCCATCTGAGCATGATCAGTGGGCCCCCCAAAGCGTCGTCAACAGATCATCTGTGAATCCTTCTTCTTCTGCAGCAGCAGCAGCCTCGGACAGCGCTTTGTGGACCATGGGCAATAACAACCCCATCACCACCACCACCACCACCACCACTGCCAGCAGCAGCAGCGGCGGCCCATCTCTGAACCCAAAGCAGTGGCCTGATCTGCCCGGATCATATGGCTCTCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

293

Amino Acids

31.37

Weight (kDa)

9.48

Isoelectric Point (pI)

69.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	30 - 86	3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	99, 108
AccBSI	CCGCTC	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	2 cut(s)	106, 258
AccIII	TCCGGA	1 cut(s)	216
AclWI	GGATC	4 cut(s)	60, 503, 639, 865
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	5 cut(s)	170, 194, 416, 440, 647
AfeI	AGCGCT	1 cut(s)	742
AfiI	CCNNNNNNNGG	4 cut(s)	233, 392, 455, 535
AgsI	TTSAA	4 cut(s)	64, 464, 490, 544
AjnI	CCWGG	3 cut(s)	48, 421, 611
AluBI	AGCT	1 cut(s)	638
AluI	AGCT	1 cut(s)	638
AlwI	GGATC	4 cut(s)	60, 503, 639, 865
Ama87I	CYCGRG	1 cut(s)	385
Aor13HI	TCCGGA	1 cut(s)	216
Aor51HI	AGCGCT	1 cut(s)	742
AoxI	GGCC	3 cut(s)	669, 817, 842
ApaI	GGGCCC	1 cut(s)	673
AspLEI	GCGC	3 cut(s)	258, 260, 743
AspS9I	GGNCC	7 cut(s)	210, 294, 360, 669, 670, 750, 818
AsuC2I	CCSGG	1 cut(s)	855
AsuHPI	GGTGA	4 cut(s)	38, 398, 438, 766
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	210, 294, 360, 750
BaeGI	GKGCMC	2 cut(s)	104, 673
BanI	GGYRCC	2 cut(s)	99, 108
BanII	GRGCYC	1 cut(s)	673
BccI	CCATC	5 cut(s)	417, 595, 658, 779, 829
BceAI	ACGGC	2 cut(s)	393, 469
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	3 cut(s)	50, 423, 613
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	855
BfmI	CTRYAG	3 cut(s)	148, 533, 717
BfoI	RGCGCY	1 cut(s)	744
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	4 cut(s)	50, 423, 613, 855
Bme18I	GGWCC	4 cut(s)	210, 294, 360, 750
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	7 cut(s)	210, 294, 360, 669, 670, 750, 818
BmiI	GGNNCC	9 cut(s)	101, 110, 211, 212, 271, 361, 610, 671, 672
BmrFI	CCNGG	4 cut(s)	50, 423, 613, 855
BmsI	GCATC	2 cut(s)	230, 296
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 392, 455, 535
Bse1I	ACTGG	2 cut(s)	112, 200
BseAI	TCCGGA	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	50, 423, 613
BseDI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BseGI	GGATG	2 cut(s)	245, 375
BseLI	CCNNNNNNNGG	4 cut(s)	233, 392, 455, 535
BseMII	CTCAG	6 cut(s)	173, 215, 461, 494, 564, 645
BseNI	ACTGG	2 cut(s)	112, 200
BsePI	GCGCGC	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	2 cut(s)	104, 673
BsgI	GTGCAG	2 cut(s)	320, 353
Bsh1236I	CGCG	2 cut(s)	106, 258
BshFI	GGCC	3 cut(s)	671, 819, 844
BshNI	GGYRCC	2 cut(s)	99, 108
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	217, 244, 855
BslFI	GGGAC	2 cut(s)	209, 223
BslI	CCNNNNNNNGG	4 cut(s)	233, 392, 455, 535
BsmFI	GGGAC	2 cut(s)	209, 223
BsnI	GGCC	3 cut(s)	671, 819, 844
BsoBI	CYCGRG	1 cut(s)	385
Bsp120I	GGGCCC	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	104, 673
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
Bsp19I	CCATGG	1 cut(s)	753
BspANI	GGCC	3 cut(s)	671, 819, 844
BspCNI	CTCAG	6 cut(s)	172, 214, 462, 493, 563, 646
BspEI	TCCGGA	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	106, 258
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	9 cut(s)	101, 110, 211, 212, 271, 361, 610, 671, 672
BspMAI	CTGCAG	2 cut(s)	537, 721
BspPI	GGATC	4 cut(s)	60, 503, 639, 865
BspT107I	GGYRCC	2 cut(s)	99, 108
BsrBI	CCGCTC	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	112, 200
BssECI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BssHII	GCGCGC	1 cut(s)	256
BssMI	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	261, 753
Bst2UI	CCWGG	3 cut(s)	50, 423, 613
Bst4CI	ACNGT	2 cut(s)	168, 298
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	104, 258, 530, 802
BstDEI	CTNAG	6 cut(s)	159, 201, 470, 480, 550, 654
BstDSI	CCRYGG	4 cut(s)	104, 164, 363, 753
BstENI	CCTNNNNNAGG	2 cut(s)	453, 533
BstF5I	GGATG	2 cut(s)	245, 375
BstFNI	CGCG	2 cut(s)	106, 258
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	3 cut(s)	258, 260, 743
BstKTI	GATC	7 cut(s)	55, 511, 634, 664, 695, 850, 860
BstMBI	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
BstNI	CCWGG	3 cut(s)	50, 423, 613
BstSCI	CCNGG	4 cut(s)	48, 421, 611, 853
BstSFI	CTRYAG	3 cut(s)	148, 533, 717
BstSLI	GKGCMC	2 cut(s)	104, 673
BstUI	CGCG	2 cut(s)	106, 258
BstXI	CCANNNNNNTGG	1 cut(s)	840
BsuRI	GGCC	3 cut(s)	671, 819, 844
BtgI	CCRYGG	4 cut(s)	104, 164, 363, 753
BtsCI	GGATG	2 cut(s)	245, 375
BtsI	GCAGTG	2 cut(s)	795, 845
BtsIMutI	CAGTG	3 cut(s)	671, 795, 845
Cac8I	GCNNGC	4 cut(s)	104, 258, 530, 802
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	3 cut(s)	258, 260, 743
Cfr13I	GGNCC	7 cut(s)	210, 294, 360, 669, 670, 750, 818
Cfr42I	CCGCGG	1 cut(s)	107
CpoI	CGGWCCG	1 cut(s)	294
CseI	GACGC	2 cut(s)	270, 670
Csp6I	GTAC	5 cut(s)	169, 193, 415, 439, 646
CspI	CGGWCCG	1 cut(s)	294
CviAII	CATG	6 cut(s)	118, 434, 506, 523, 659, 754
CviQI	GTAC	5 cut(s)	169, 193, 415, 439, 646
DdeI	CTNAG	6 cut(s)	159, 201, 470, 480, 550, 654
DpnI	GATC	7 cut(s)	54, 510, 633, 663, 694, 849, 859
DpnII	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
EciI	GGCGGA	2 cut(s)	86, 252
Eco130I	CCWWGG	2 cut(s)	261, 753
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	4 cut(s)	210, 294, 360, 750
Eco47III	AGCGCT	1 cut(s)	742
Eco88I	CYCGRG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	2 cut(s)	453, 533
EcoO109I	RGGNCCY	2 cut(s)	210, 670
EcoRII	CCWGG	3 cut(s)	48, 421, 611
EcoT14I	CCWWGG	2 cut(s)	261, 753
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	261, 753
FaeI	CATG	6 cut(s)	121, 437, 509, 526, 662, 757
FaiI	YATR	9 cut(s)	119, 435, 507, 524, 560, 660, 755, 862, 864
FaqI	GGGAC	2 cut(s)	209, 223
FatI	CATG	6 cut(s)	117, 433, 505, 522, 658, 753
FauI	CCCGC	3 cut(s)	111, 200, 350
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	374
FokI	GGATG	2 cut(s)	252, 382
FriOI	GRGCYC	1 cut(s)	673
GlaI	GCGC	3 cut(s)	257, 259, 742
GsuI	CTGGAG	1 cut(s)	595
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	671, 819, 844
HapII	CCGG	3 cut(s)	217, 244, 855
HgaI	GACGC	2 cut(s)	270, 670
HhaI	GCGC	3 cut(s)	258, 260, 743
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	121, 437, 509, 526, 662, 757
Hin6I	GCGC	3 cut(s)	256, 258, 741
HinP1I	GCGC	3 cut(s)	256, 258, 741
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	199, 472, 703
HpaII	CCGG	3 cut(s)	217, 244, 855
HphI	GGTGA	4 cut(s)	38, 398, 438, 766
Hpy166II	GTNNAC	3 cut(s)	375, 688, 750
Hpy188I	TCNGA	6 cut(s)	294, 471, 600, 655, 736, 828
Hpy188III	TCNNGA	2 cut(s)	217, 506
Hpy8I	GTNNAC	3 cut(s)	375, 688, 750
Hpy99I	CGWCG	2 cut(s)	233, 686
HpyAV	CCTTC	4 cut(s)	28, 58, 241, 717
HpyCH4III	ACNGT	2 cut(s)	168, 298
HpyCH4IV	ACGT	3 cut(s)	222, 330, 583
HpyCH4V	TGCA	8 cut(s)	4, 177, 301, 334, 455, 535, 571, 719
HpyF3I	CTNAG	6 cut(s)	159, 201, 470, 480, 550, 654
HpySE526I	ACGT	3 cut(s)	222, 330, 583
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	6 cut(s)	121, 437, 509, 526, 662, 757
HspAI	GCGC	3 cut(s)	256, 258, 741
KflI	GGGWCCC	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	107
Kzo9I	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
LmnI	GCTCC	4 cut(s)	37, 73, 614, 615
LweI	GCATC	2 cut(s)	230, 296
MaeII	ACGT	3 cut(s)	222, 330, 583
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	7 cut(s)	54, 510, 633, 663, 694, 849, 859
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
MboII	GAAGA	3 cut(s)	420, 702, 705
MhlI	GDGCHC	2 cut(s)	104, 673
MluCI	AATT	3 cut(s)	340, 348, 874
MlyI	GAGTC	2 cut(s)	193, 481
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	9 cut(s)	13, 17, 164, 183, 224, 283, 286, 526, 742
MroI	TCCGGA	1 cut(s)	216
MspA1I	CMGCKG	3 cut(s)	58, 106, 813
MspI	CCGG	3 cut(s)	217, 244, 855
MspR9I	CCNGG	4 cut(s)	50, 423, 613, 855
MvaI	CCWGG	3 cut(s)	50, 423, 613
MvnI	CGCG	2 cut(s)	106, 258
NciI	CCSGG	1 cut(s)	855
NcoI	CCATGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
NlaIII	CATG	6 cut(s)	121, 437, 509, 526, 662, 757
NlaIV	GGNNCC	9 cut(s)	101, 110, 211, 212, 271, 361, 610, 671, 672
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	444
PagI	TCATGA	1 cut(s)	505
PauI	GCGCGC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	611
PleI	GAGTC	2 cut(s)	193, 480
PpsI	GAGTC	2 cut(s)	193, 480
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	48, 421, 611
PspGI	CCWGG	3 cut(s)	48, 421, 611
PspN4I	GGNNCC	9 cut(s)	101, 110, 211, 212, 271, 361, 610, 671, 672
PspOMI	GGGCCC	1 cut(s)	669
PspPI	GGNCC	7 cut(s)	210, 294, 360, 669, 670, 750, 818
PspPPI	RGGWCCY	1 cut(s)	210
PstI	CTGCAG	2 cut(s)	537, 721
PteI	GCGCGC	1 cut(s)	256
RsaI	GTAC	5 cut(s)	170, 194, 416, 440, 647
RsaNI	GTAC	5 cut(s)	169, 193, 415, 439, 646
Rsr2I	CGGWCCG	1 cut(s)	294
RsrII	CGGWCCG	1 cut(s)	294
SacII	CCGCGG	1 cut(s)	107
Sau3AI	GATC	7 cut(s)	52, 508, 631, 661, 692, 847, 857
Sau96I	GGNCC	7 cut(s)	210, 294, 360, 669, 670, 750, 818
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	2 cut(s)	193, 481
ScrFI	CCNGG	4 cut(s)	50, 423, 613, 855
SduI	GDGCHC	2 cut(s)	104, 673
SetI	ASST	8 cut(s)	28, 101, 194, 225, 333, 451, 586, 640
SfaNI	GCATC	2 cut(s)	230, 296
SfcI	CTRYAG	3 cut(s)	148, 533, 717
Sfr303I	CCGCGG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	107
SinI	GGWCC	4 cut(s)	210, 294, 360, 750
Sse9I	AATT	3 cut(s)	340, 348, 874
StyD4I	CCNGG	4 cut(s)	48, 421, 611, 853
StyI	CCWWGG	2 cut(s)	261, 753
TaaI	ACNGT	2 cut(s)	168, 298
TaiI	ACGT	3 cut(s)	225, 333, 586
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	340, 348, 874
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	9 cut(s)	71, 94, 237, 307, 357, 577, 609, 816, 819
TfiI	GAWTC	1 cut(s)	703
TscAI	CASTG	3 cut(s)	671, 802, 845
TseFI	GTSAC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	671, 802, 845
VpaK11BI	GGWCC	4 cut(s)	210, 294, 360, 750
XagI	CCTNNNNNAGG	2 cut(s)	453, 533
XmiI	GTMKAC	1 cut(s)	374
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.