Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

88530387 .. 88532756

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCAGGGAGAGCGAGACCAGCAGCAGCACAACAACCAAGACCGGAAGGTGAACCAACAGCAGCAACAGGGACAACAGCAGCAACAGGGACAACAGCAACCGCAGCAGCACCATGAGCCTCAGAAGTGTCCAAGGTGCGAGTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGCTACTTCTGCAAGGCGTGCAGGAGGTACTGGACACAGGGTGGGACCCTCCGGAACGTCCCCGTCGGTGGGGGCTGCCGGAAAGGCAAGCGTGCCAAGACCATGTCCTCGTCATCATCAGCCACCTCCTCTCGCTCGGTGCTTCAGCCGCAGCCGCAGCCACAAGACCACCACCAGTTGCAGCAGAGGCCATTGATGATGTCAACAGGGCCAGCTGCCCTGAACTCTCTGGCTGGCTCCCAGTACTATCCTGGTGGTACTGGGTATTTGACATCTATGCCCTTTGCTCAAAACCTCAACCATCTTGGGGGTTCTGGTCAATTGGGATCAGGTGGTGGTGCTTCAAATTTGGGACTGCTTCATGGCTTCAATGCCATCTCTTCCTATGGCCAGCGTCAGATGCAAAGCCAGCTTTTTAAGGGCAACATGGAGCCTCCACCTCTGTACCCATCTGAGAATCATCGAGGCCTGTTGCTTCAACCAGCCAGGCCAAGTGGTTCTATGACTGATTGGCCTGAGAGCTTCATCAACAAATCTCATGCTTCTGTTTCTGCTTCTGCGGCTGCAGCCTCAGCTGGTCAAAGCGCTCTATGGAGCACCACCATGGGGCACAACACGAGCACCACCAGCGGTGCAGGCCCTTCTCTGAACTCAGCTCAGTGGCCTGATGATATTGCCGGATCTTTTGCCGCCGGCCCTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

299

Amino Acids

32.31

Weight (kDa)

9.58

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	40 - 95	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	7 cut(s)	101, 193, 341, 347, 752, 822, 882
AclWI	GGATC	2 cut(s)	526, 880
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	4 cut(s)	221, 437, 451, 638
AfeI	AGCGCT	1 cut(s)	778
AfiI	CCNNNNNNNGG	4 cut(s)	260, 261, 499, 798
AgsI	TTSAA	3 cut(s)	537, 562, 671
AjnI	CCWGG	2 cut(s)	442, 677
AluBI	AGCT	5 cut(s)	407, 604, 714, 767, 848
AluI	AGCT	5 cut(s)	407, 604, 714, 767, 848
Alw21I	GWGCWC	2 cut(s)	791, 815
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	526, 880
Aor13HI	TCCGGA	1 cut(s)	243
Aor51HI	AGCGCT	1 cut(s)	778
AoxI	GGCC	9 cut(s)	380, 401, 580, 658, 680, 704, 829, 854, 886
ApoI	RAATTY	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	4 cut(s)	237, 401, 830, 887
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	804
BaeI	ACNNNNGTAYC	2 cut(s)	620, 653
BalI	TGGCCA	1 cut(s)	582
BauI	CACGAG	1 cut(s)	808
Bbv12I	GWGCWC	2 cut(s)	791, 815
BbvCI	CCTCAGC	1 cut(s)	763
BccI	CCATC	3 cut(s)	501, 575, 649
BciT130I	CCWGG	2 cut(s)	444, 679
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	175, 756
BfoI	RGCGCY	1 cut(s)	780
BglI	GCCNNNNNGGC	1 cut(s)	276
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	444, 679
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	4 cut(s)	237, 401, 830, 887
BmiI	GGNNCC	4 cut(s)	238, 239, 430, 624
BmrFI	CCNGG	2 cut(s)	444, 679
BmrI	ACTGGG	2 cut(s)	427, 462
BmsI	GCATC	1 cut(s)	582
BmuI	ACTGGG	2 cut(s)	427, 462
Bpu10I	CCTNAGC	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	131, 795
BsaWI	WCCGGW	2 cut(s)	42, 243
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 261, 499, 798
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	4 cut(s)	227, 367, 433, 457
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	444, 679
BseDI	CCNNGG	2 cut(s)	131, 795
BseLI	CCNNNNNNNGG	4 cut(s)	260, 261, 499, 798
BseMII	CTCAG	6 cut(s)	134, 636, 699, 777, 858, 863
BseNI	ACTGG	4 cut(s)	227, 367, 433, 457
BseRI	GAGGAG	2 cut(s)	310, 882
BseSI	GKGCMC	1 cut(s)	804
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	2 cut(s)	232, 846
BshFI	GGCC	9 cut(s)	382, 403, 582, 660, 682, 706, 831, 856, 888
BsiHKAI	GWGCWC	2 cut(s)	791, 815
BsiSI	CCGG	5 cut(s)	43, 244, 271, 870, 885
BslFI	GGGAC	7 cut(s)	84, 102, 127, 169, 236, 250, 558
BslI	CCNNNNNNNGG	4 cut(s)	260, 261, 499, 798
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	7 cut(s)	84, 102, 127, 169, 236, 250, 558
BsnI	GGCC	9 cut(s)	382, 403, 582, 660, 682, 706, 831, 856, 888
Bso31I	GGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	791, 804, 815
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	518, 872
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	7 cut(s)	101, 193, 341, 347, 752, 822, 882
BspANI	GGCC	9 cut(s)	382, 403, 582, 660, 682, 706, 831, 856, 888
BspCNI	CTCAG	6 cut(s)	133, 637, 700, 776, 857, 862
BspEI	TCCGGA	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	238, 239, 430, 624
BspMAI	CTGCAG	1 cut(s)	760
BspPI	GGATC	2 cut(s)	526, 880
BspTNI	GGTCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	4 cut(s)	227, 367, 433, 457
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	2 cut(s)	131, 795
BssMI	GATC	2 cut(s)	518, 872
BssSI	CACGAG	1 cut(s)	808
BssT1I	CCWWGG	2 cut(s)	131, 795
Bst2BI	CACGAG	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	444, 679
Bst6I	CTCTTC	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	9 cut(s)	211, 281, 285, 405, 427, 584, 602, 829, 886
BstDEI	CTNAG	7 cut(s)	120, 645, 708, 763, 844, 849, 894
BstDSI	CCRYGG	1 cut(s)	795
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	2 cut(s)	521, 875
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	518, 872
BstNI	CCWGG	2 cut(s)	444, 679
BstSCI	CCNGG	2 cut(s)	442, 677
BstSFI	CTRYAG	2 cut(s)	175, 756
BstSLI	GKGCMC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	872
BsuRI	GGCC	9 cut(s)	382, 403, 582, 660, 682, 706, 831, 856, 888
BtgI	CCRYGG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	857
Cac8I	GCNNGC	9 cut(s)	211, 281, 285, 405, 427, 584, 602, 829, 886
CfoI	GCGC	1 cut(s)	779
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	4 cut(s)	237, 401, 830, 887
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	4 cut(s)	220, 436, 450, 637
CviAII	CATG	6 cut(s)	113, 295, 554, 619, 731, 796
CviQI	GTAC	4 cut(s)	220, 436, 450, 637
DdeI	CTNAG	7 cut(s)	120, 645, 708, 763, 844, 849, 894
DpnI	GATC	2 cut(s)	520, 874
DpnII	GATC	2 cut(s)	518, 872
DraIII	CACNNNGTG	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	131, 795
Eco147I	AGGCCT	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	237, 830
EcoRII	CCWGG	2 cut(s)	442, 677
EcoT14I	CCWWGG	2 cut(s)	131, 795
ErhI	CCWWGG	2 cut(s)	131, 795
FaeI	CATG	6 cut(s)	116, 298, 557, 622, 734, 799
FaqI	GGGAC	7 cut(s)	84, 102, 127, 169, 236, 250, 558
FatI	CATG	6 cut(s)	112, 294, 553, 618, 730, 795
FauI	CCCGC	1 cut(s)	200
GlaI	GCGC	1 cut(s)	778
GsaI	CCCAGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	9 cut(s)	382, 403, 582, 660, 682, 706, 831, 856, 888
HapII	CCGG	5 cut(s)	43, 244, 271, 870, 885
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	779
Hin1II	CATG	6 cut(s)	116, 298, 557, 622, 734, 799
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	140, 649
HpaII	CCGG	5 cut(s)	43, 244, 271, 870, 885
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	52, 396
Hpy188I	TCNGA	4 cut(s)	123, 591, 646, 840
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	52, 396
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	40, 843
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	7 cut(s)	4, 204, 213, 373, 595, 758, 827
HpyF3I	CTNAG	7 cut(s)	120, 645, 708, 763, 844, 849, 894
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	116, 298, 557, 622, 734, 799
HspAI	GCGC	1 cut(s)	777
KflI	GGGWCCC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	884
KroNI	GCCGGC	1 cut(s)	886
Kzo9I	GATC	2 cut(s)	518, 872
LmnI	GCTCC	3 cut(s)	434, 622, 786
LweI	GCATC	1 cut(s)	582
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	520, 874
MboI	GATC	2 cut(s)	518, 872
MboII	GAAGA	1 cut(s)	564
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	1 cut(s)	872
MhlI	GDGCHC	3 cut(s)	791, 804, 815
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	2 cut(s)	512, 538
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	3 cut(s)	407, 767, 822
MspI	CCGG	5 cut(s)	43, 244, 271, 870, 885
MspR9I	CCNGG	2 cut(s)	444, 679
MunI	CAATTG	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	444, 679
NaeI	GCCGGC	1 cut(s)	886
NcoI	CCATGG	1 cut(s)	795
NdeII	GATC	2 cut(s)	518, 872
NgoMIV	GCCGGC	1 cut(s)	884
NlaIII	CATG	6 cut(s)	116, 298, 557, 622, 734, 799
NlaIV	GGNNCC	4 cut(s)	238, 239, 430, 624
PceI	AGGCCT	1 cut(s)	660
PdiI	GCCGGC	1 cut(s)	886
PfeI	GAWTC	1 cut(s)	649
PflFI	GACNNNGTC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	442, 677
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	442, 677
PspN4I	GGNNCC	4 cut(s)	238, 239, 430, 624
PspPI	GGNCC	4 cut(s)	237, 401, 830, 887
PspPPI	RGGWCCY	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	1 cut(s)	872
PsyI	GACNNNGTC	1 cut(s)	295
PvuII	CAGCTG	2 cut(s)	407, 767
RsaI	GTAC	4 cut(s)	221, 437, 451, 638
RsaNI	GTAC	4 cut(s)	220, 436, 450, 637
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	1 cut(s)	609
Sau3AI	GATC	2 cut(s)	518, 872
Sau96I	GGNCC	4 cut(s)	237, 401, 830, 887
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	444, 679
SduI	GDGCHC	3 cut(s)	791, 804, 815
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	2 cut(s)	175, 756
SinI	GGWCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	794
Sse9I	AATT	2 cut(s)	512, 538
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	7 cut(s)	101, 193, 341, 347, 752, 822, 882
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	442, 677
StyI	CCWWGG	2 cut(s)	131, 795
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	655
TasI	AATT	2 cut(s)	512, 538
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	4 cut(s)	343, 349, 755, 884
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	857
TspDTI	ATGAA	2 cut(s)	542, 706
TspRI	CASTG	1 cut(s)	857
Tth111I	GACNNNGTC	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.