Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

24529776 .. 24530660

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1115200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAGCAACAGCAGCAGGAGGGGGGTGAGCAGAAGGAGCAGCAGAACCAGGATCAGCGGTTGAAGGCGGCGGAGCAGCAGAACCAGCAGCCGCACGGGTGCCCGCGGTGCCAGTCCATGAACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCACGGTACTTTTGCAAGGCGTGTAGGAGGTACTGGACTCAGGGAGGGACCCTCAGGAACGTTCCCGTCGGCGGCGGATGCCGGAAGGGGAAGCGCGCCAAGGGGGGTTCCTCCTCGGCGTCAGCATCTCGGACCGTGCAGCCGCAGCCATCACAGAAAGAGCAGGACATGCAGAACAATTTGGGAATTGGCGGCGGGTCCGTGGGGATGTCTACGGCCAACCCGAGCGGTGGATTGGCTATTCACCATCAGTACTACCCTGGTTCTTCTCATGGGTACTTGTCATCTTTTGCAGGGCTTCAATCTCTGAGTCAATCTCAGCCGTTCAATGTTGGGGGCGGTCATGATCCTGCCTCGAACATGAGCCTGCTGCAGGGGTTCAATCTCTCAGTTCCTATGGTGGCGTTGCAGCCGCAGCAGCGTCAGCAGTTTTTTCAGGTGAGCGGCGCTAGGAGCAACAGTCTGTTGGATCAAGCTGCTCTGTACCCATCTGAGCATGATCTGTGGGCCCCCCAGAGCGTCGTCAACAGATCATCTGTGAATCCTTCTTCTTCTTCTGCAGCAGCAGCCTCGGACAGCGCTTTGTGGACCATGGGCCATAACAATCCCATCACCACCACCACCACCACCACCACCACCACTACCAGCAGCAGCGGCGGCGGCCCATCTCTGAACCCAAAGCAGTGGCCTGATCTGCCCGGATCATATGGCTCTCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

295

Amino Acids

31.47

Weight (kDa)

9.28

Isoelectric Point (pI)

68.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	30 - 86	4e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	99, 108
AccBSI	CCGCTC	2 cut(s)	390, 606
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	2 cut(s)	106, 258
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	4 cut(s)	60, 503, 639, 871
AcoI	YGGCCR	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	5 cut(s)	170, 194, 416, 440, 647
AfeI	AGCGCT	1 cut(s)	742
AfiI	CCNNNNNNNGG	3 cut(s)	233, 392, 535
AgsI	TTSAA	4 cut(s)	64, 464, 490, 544
AjnI	CCWGG	2 cut(s)	48, 421
AluBI	AGCT	1 cut(s)	638
AluI	AGCT	1 cut(s)	638
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	4 cut(s)	60, 503, 639, 871
Ama87I	CYCGRG	1 cut(s)	385
Aor51HI	AGCGCT	1 cut(s)	742
AoxI	GGCC	5 cut(s)	378, 669, 757, 823, 848
ApaI	GGGCCC	1 cut(s)	673
AspLEI	GCGC	4 cut(s)	258, 260, 611, 743
AspS9I	GGNCC	8 cut(s)	210, 294, 360, 669, 670, 750, 757, 824
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	4 cut(s)	38, 398, 613, 766
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	4 cut(s)	210, 294, 360, 750
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	104, 673
BanI	GGYRCC	2 cut(s)	99, 108
BanII	GRGCYC	1 cut(s)	673
BccI	CCATC	5 cut(s)	319, 417, 658, 779, 835
BceAI	ACGGC	2 cut(s)	393, 469
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	2 cut(s)	50, 423
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	3 cut(s)	148, 533, 720
BfoI	RGCGCY	2 cut(s)	612, 744
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	3 cut(s)	50, 423, 861
Bme18I	GGWCC	4 cut(s)	210, 294, 360, 750
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	8 cut(s)	210, 294, 360, 669, 670, 750, 757, 824
BmiI	GGNNCC	8 cut(s)	101, 110, 211, 212, 271, 361, 671, 672
BmrFI	CCNGG	3 cut(s)	50, 423, 861
BmsI	GCATC	2 cut(s)	230, 296
BplI	GAGNNNNNCTC	4 cut(s)	198, 230, 463, 495
BpuMI	CCSGG	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 392, 535
Bse1I	ACTGG	2 cut(s)	112, 200
Bse21I	CCTNAGG	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	50, 423
BseDI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BseGI	GGATG	2 cut(s)	245, 375
BseLI	CCNNNNNNNGG	3 cut(s)	233, 392, 535
BseMII	CTCAG	7 cut(s)	173, 215, 229, 461, 494, 564, 645
BseNI	ACTGG	2 cut(s)	112, 200
BsePI	GCGCGC	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	2 cut(s)	104, 673
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	106, 258
BshFI	GGCC	5 cut(s)	380, 671, 759, 825, 850
BshNI	GGYRCC	2 cut(s)	99, 108
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	244, 861
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	233, 392, 535
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	5 cut(s)	380, 671, 759, 825, 850
BsoBI	CYCGRG	1 cut(s)	385
Bsp120I	GGGCCC	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	104, 673
Bsp143I	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
Bsp19I	CCATGG	1 cut(s)	753
BspANI	GGCC	5 cut(s)	380, 671, 759, 825, 850
BspCNI	CTCAG	7 cut(s)	172, 214, 228, 462, 493, 563, 646
BspFNI	CGCG	2 cut(s)	106, 258
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	8 cut(s)	101, 110, 211, 212, 271, 361, 671, 672
BspMAI	CTGCAG	2 cut(s)	537, 724
BspPI	GGATC	4 cut(s)	60, 503, 639, 871
BspT107I	GGYRCC	2 cut(s)	99, 108
BsrBI	CCGCTC	2 cut(s)	390, 606
BsrI	ACTGG	2 cut(s)	112, 200
BssECI	CCNNGG	8 cut(s)	104, 164, 261, 276, 363, 421, 732, 753
BssHII	GCGCGC	1 cut(s)	256
BssMI	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	261, 753
Bst2UI	CCWGG	2 cut(s)	50, 423
Bst4CI	ACNGT	4 cut(s)	152, 168, 298, 623
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	104, 258, 530
BstDEI	CTNAG	7 cut(s)	159, 201, 215, 470, 480, 550, 654
BstDSI	CCRYGG	4 cut(s)	104, 164, 363, 753
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	245, 375
BstFNI	CGCG	2 cut(s)	106, 258
BstH2I	RGCGCY	2 cut(s)	612, 744
BstHHI	GCGC	4 cut(s)	258, 260, 611, 743
BstKTI	GATC	7 cut(s)	55, 511, 634, 664, 695, 856, 866
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
BstNI	CCWGG	2 cut(s)	50, 423
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	48, 421, 859
BstSFI	CTRYAG	3 cut(s)	148, 533, 720
BstSLI	GKGCMC	2 cut(s)	104, 673
BstUI	CGCG	2 cut(s)	106, 258
BstXI	CCANNNNNNTGG	1 cut(s)	846
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	5 cut(s)	380, 671, 759, 825, 850
BtgI	CCRYGG	4 cut(s)	104, 164, 363, 753
BtsCI	GGATG	2 cut(s)	245, 375
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	1 cut(s)	851
Cac8I	GCNNGC	3 cut(s)	104, 258, 530
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	4 cut(s)	258, 260, 611, 743
Cfr13I	GGNCC	8 cut(s)	210, 294, 360, 669, 670, 750, 757, 824
Cfr42I	CCGCGG	1 cut(s)	107
CpoI	CGGWCCG	1 cut(s)	294
CseI	GACGC	3 cut(s)	270, 572, 670
Csp6I	GTAC	5 cut(s)	169, 193, 415, 439, 646
CspI	CGGWCCG	1 cut(s)	294
CviAII	CATG	7 cut(s)	118, 331, 434, 506, 523, 659, 754
CviQI	GTAC	5 cut(s)	169, 193, 415, 439, 646
DdeI	CTNAG	7 cut(s)	159, 201, 215, 470, 480, 550, 654
DpnI	GATC	7 cut(s)	54, 510, 633, 663, 694, 855, 865
DpnII	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
EaeI	YGGCCR	1 cut(s)	378
EciI	GGCGGA	2 cut(s)	86, 252
Eco130I	CCWWGG	2 cut(s)	261, 753
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	4 cut(s)	210, 294, 360, 750
Eco47III	AGCGCT	1 cut(s)	742
Eco81I	CCTNAGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	210, 670
EcoRII	CCWGG	2 cut(s)	48, 421
EcoT14I	CCWWGG	2 cut(s)	261, 753
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	261, 753
FaeI	CATG	7 cut(s)	121, 334, 437, 509, 526, 662, 757
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	7 cut(s)	117, 330, 433, 505, 522, 658, 753
FauI	CCCGC	2 cut(s)	111, 350
FauNDI	CATATG	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	374
FokI	GGATG	2 cut(s)	252, 382
FriOI	GRGCYC	1 cut(s)	673
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	4 cut(s)	257, 259, 610, 742
HaeII	RGCGCY	2 cut(s)	612, 744
HaeIII	GGCC	5 cut(s)	380, 671, 759, 825, 850
HapII	CCGG	2 cut(s)	244, 861
HgaI	GACGC	3 cut(s)	270, 572, 670
HhaI	GCGC	4 cut(s)	258, 260, 611, 743
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	7 cut(s)	121, 334, 437, 509, 526, 662, 757
Hin6I	GCGC	4 cut(s)	256, 258, 609, 741
HinP1I	GCGC	4 cut(s)	256, 258, 609, 741
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	199, 472, 703
HpaII	CCGG	2 cut(s)	244, 861
HphI	GGTGA	4 cut(s)	38, 398, 613, 766
Hpy166II	GTNNAC	3 cut(s)	375, 688, 750
Hpy188I	TCNGA	5 cut(s)	294, 471, 655, 736, 834
Hpy188III	TCNNGA	2 cut(s)	217, 506
Hpy8I	GTNNAC	3 cut(s)	375, 688, 750
Hpy99I	CGWCG	2 cut(s)	233, 686
HpyAV	CCTTC	4 cut(s)	28, 58, 241, 717
HpyCH4III	ACNGT	4 cut(s)	152, 168, 298, 623
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	8 cut(s)	4, 177, 301, 334, 455, 535, 571, 722
HpyF3I	CTNAG	7 cut(s)	159, 201, 215, 470, 480, 550, 654
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	7 cut(s)	121, 334, 437, 509, 526, 662, 757
HspAI	GCGC	4 cut(s)	256, 258, 609, 741
KflI	GGGWCCC	1 cut(s)	210
KspI	CCGCGG	1 cut(s)	107
Kzo9I	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
LmnI	GCTCC	3 cut(s)	37, 73, 615
LweI	GCATC	2 cut(s)	230, 296
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	222
MalI	GATC	7 cut(s)	54, 510, 633, 663, 694, 855, 865
MbiI	CCGCTC	2 cut(s)	390, 606
MboI	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
MboII	GAAGA	4 cut(s)	420, 702, 705, 708
MhlI	GDGCHC	2 cut(s)	104, 673
MluCI	AATT	3 cut(s)	340, 348, 880
MlyI	GAGTC	2 cut(s)	193, 481
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	13, 183, 200, 224, 283, 286, 526, 742
MspA1I	CMGCKG	3 cut(s)	58, 106, 816
MspI	CCGG	2 cut(s)	244, 861
MspR9I	CCNGG	3 cut(s)	50, 423, 861
MvaI	CCWGG	2 cut(s)	50, 423
MvnI	CGCG	2 cut(s)	106, 258
NciI	CCSGG	1 cut(s)	861
NcoI	CCATGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
NlaIII	CATG	7 cut(s)	121, 334, 437, 509, 526, 662, 757
NlaIV	GGNNCC	8 cut(s)	101, 110, 211, 212, 271, 361, 671, 672
NmeAIII	GCCGAG	1 cut(s)	257
NspI	RCATGY	1 cut(s)	334
PagI	TCATGA	1 cut(s)	505
PauI	GCGCGC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	703
PleI	GAGTC	2 cut(s)	193, 480
PpsI	GAGTC	2 cut(s)	193, 480
PpuMI	RGGWCCY	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	48, 421
PspGI	CCWGG	2 cut(s)	48, 421
PspN4I	GGNNCC	8 cut(s)	101, 110, 211, 212, 271, 361, 671, 672
PspOMI	GGGCCC	1 cut(s)	669
PspPI	GGNCC	8 cut(s)	210, 294, 360, 669, 670, 750, 757, 824
PspPPI	RGGWCCY	1 cut(s)	210
PstI	CTGCAG	2 cut(s)	537, 724
PteI	GCGCGC	1 cut(s)	256
RsaI	GTAC	5 cut(s)	170, 194, 416, 440, 647
RsaNI	GTAC	5 cut(s)	169, 193, 415, 439, 646
Rsr2I	CGGWCCG	1 cut(s)	294
RsrII	CGGWCCG	1 cut(s)	294
SacII	CCGCGG	1 cut(s)	107
Sau3AI	GATC	7 cut(s)	52, 508, 631, 661, 692, 853, 863
Sau96I	GGNCC	8 cut(s)	210, 294, 360, 669, 670, 750, 757, 824
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	2 cut(s)	193, 481
ScrFI	CCNGG	3 cut(s)	50, 423, 861
SduI	GDGCHC	2 cut(s)	104, 673
SetI	ASST	4 cut(s)	194, 225, 603, 640
SfaNI	GCATC	2 cut(s)	230, 296
SfcI	CTRYAG	3 cut(s)	148, 533, 720
Sfr303I	CCGCGG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	107
SinI	GGWCC	4 cut(s)	210, 294, 360, 750
Sse9I	AATT	3 cut(s)	340, 348, 880
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	48, 421, 859
StyI	CCWWGG	2 cut(s)	261, 753
TaaI	ACNGT	4 cut(s)	152, 168, 298, 623
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	340, 348, 880
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	703
TscAI	CASTG	1 cut(s)	851
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	851
VpaK11BI	GGWCC	4 cut(s)	210, 294, 360, 750
XagI	CCTNNNNNAGG	1 cut(s)	533
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	1 cut(s)	612
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.