Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Reverse (-)

19476156 .. 19476473

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGGCAGAATCCATAGCAATGCTACCCTACACCATCTCCTCCTCCATCCCCTTATACCACCACAGGCTCCTGCCACATGTCCTCTCCGTCTCCTCCTCCCACTCCGCCGCTTTCTCCAGAAACTGCTCCTCCTCCTCGTCGGCGGCGGCGCAATTCTCGTCGCTTTTATCGCTCCGGAAGTGCTTGCCGCCGCTAAAAGCGCTTGTGACGGCCGATACTACTCGAACCGCCAATACGACGCCGCTTGGTGTTGACGATAGAGTCGGAGTGTTGTTGCTTAACCTCGGCGAACCGGAGACTCTCGACGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

106

Amino Acids

11.09

Weight (kDa)

6.38

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	9 cut(s)	5, 108, 111, 146, 149, 191, 194, 231, 245
AcoI	YGGCCR	1 cut(s)	213
AcyI	GRCGYC	2 cut(s)	242, 312
AfeI	AGCGCT	1 cut(s)	204
AflIII	ACRYGT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	97, 293
AlwNI	CAGNNNCTG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	154, 205
BccI	CCATC	2 cut(s)	44, 56
BceAI	ACGGC	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	97, 293
BfaI	CTAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	7 cut(s)	6, 111, 147, 150, 191, 194, 245
BlsI	GCNGC	7 cut(s)	7, 112, 148, 151, 192, 195, 246
BmiI	GGNNCC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	103
BsaHI	GRCGYC	2 cut(s)	242, 312
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	2 cut(s)	177, 295
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 116, 146
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	27
BseRI	GAGGAG	7 cut(s)	31, 34, 85, 88, 121, 124, 127
BseX3I	CGGCCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	178, 296
BsmAI	GTCTC	2 cut(s)	97, 293
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	177
BspACI	CCGC	9 cut(s)	5, 108, 111, 146, 149, 191, 194, 231, 245
BspANI	GGCC	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	286
BssNI	GRCGYC	2 cut(s)	242, 312
BstACI	GRCGYC	2 cut(s)	242, 312
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	154, 205
BstMAI	GTCTC	2 cut(s)	97, 293
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 202
BstNSI	RCATGY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	154, 205
CseI	GACGC	1 cut(s)	250
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	2 cut(s)	70, 215
CviKI_1	RGCY	2 cut(s)	70, 215
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	213
EagI	CGGCCG	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	213
Eco47III	AGCGCT	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	17, 58, 81
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	7 cut(s)	6, 111, 147, 150, 191, 194, 245
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	6, 111, 147, 150, 191, 194, 245
FspBI	CTAG	1 cut(s)	316
GlaI	GCGC	2 cut(s)	153, 204
GluI	GCNGC	7 cut(s)	6, 111, 147, 150, 191, 194, 245
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	178, 296
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	154, 205
Hin1I	GRCGYC	2 cut(s)	242, 312
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	152, 203
HinP1I	GCGC	2 cut(s)	152, 203
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	11, 264, 301
HpaII	CCGG	2 cut(s)	178, 296
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	120, 178, 305
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	5 cut(s)	145, 166, 244, 311, 314
HpyCH4IV	ACGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 202
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	2 cut(s)	242, 312
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	152, 203
Kpn2I	TCCGGA	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	75, 134, 180
LpnPI	CCDG	5 cut(s)	52, 86, 133, 191, 309
MaeI	CTAG	1 cut(s)	316
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	208
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	273, 295
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	9 cut(s)	52, 55, 95, 106, 109, 142, 145, 148, 296
MroI	TCCGGA	1 cut(s)	177
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	2 cut(s)	178, 296
MwoI	GCNNNNNNNGC	2 cut(s)	172, 202
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	7 cut(s)	7, 112, 148, 151, 192, 195, 246
PleI	GAGTC	2 cut(s)	272, 295
PpsI	GAGTC	2 cut(s)	272, 295
PscI	ACATGT	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PstNI	CAGNNNCTG	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	7 cut(s)	6, 111, 147, 150, 191, 194, 245
SchI	GAGTC	2 cut(s)	273, 295
SetI	ASST	2 cut(s)	288, 315
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	9 cut(s)	5, 108, 111, 146, 149, 191, 194, 231, 245
SspMI	CTAG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	226, 306
TasI	AATT	1 cut(s)	155
TauI	GCSGC	7 cut(s)	8, 113, 149, 152, 193, 196, 247
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	311
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	316
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.