Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Reverse (-)

24098224 .. 24099513

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGTGCCACTTGCATATGTGGAAGAGGCTGGTGATCGATCCATACAAGGCGGAGATGGAGGAATGCATAGATTTGATAATGGAAGAGTTAGAAAAGAGAAAAATAACTAATGCGTACACCCTTGCCTATCAGAGCAGAGTTGGACCTGTGGAGTGGTTAAAACCCTACACAGATGAGACAATAATTGAGCTTGGACAAAAGGGAGTCAAAAGACTGCTGGCAGTCCCTATAAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATCGATGTTGAGTACAAAGAATTGGCTCTGAAATCTGGTATAGAGGTTTGGGGGCGTGTTCCCGCACTAGGATGTGAAGCCACCTTCATTTCAGATTTGGCAGATGCAGTGATTGAGAGCTTGCCATATGTTGGAGCTATGGCAGTCTCACATCTTGAAGCTCGACAGTCTTTAGTTCCACTTGGGAGTGTGGAAGAGTTGTTAGCGACATATGATTCACAGCGTAGGGAGCTACCGGCACCTGTGACTGTTTGGGAATGGGGTTGGACAAAAAGTGCCGAGACTTGGAATGGAAGAGCGGCTATGTTGGCAGTGGTGGTTCTACTGGTCCTAGAAGTCACCACCGGGGAGGGGTTTTTGCACCAATGGGGCATATTACCCTTACATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

4.92

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	14 - 130	1.6e-38	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	6, 508
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	569
AciI	CCGC	3 cut(s)	53, 333, 569
AclWI	GGATC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	119, 284
AfiI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
AgsI	TTSAA	2 cut(s)	257, 428
AluBI	AGCT	6 cut(s)	193, 237, 390, 407, 431, 502
AluI	AGCT	6 cut(s)	193, 237, 390, 407, 431, 502
Alw26I	GTCTC	3 cut(s)	173, 421, 545
AlwI	GGATC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	146, 598
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	46, 601
AvaII	GGWCC	2 cut(s)	146, 598
BanI	GGYRCC	2 cut(s)	6, 508
BccI	CCATC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	173, 421, 545
BfaI	CTAG	3 cut(s)	263, 338, 602
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	2 cut(s)	146, 598
BmgT120I	GGNCC	2 cut(s)	146, 598
BmiI	GGNNCC	2 cut(s)	8, 510
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	39, 273
BsaJI	CCNNGG	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	600
BseCI	ATCGAT	2 cut(s)	39, 273
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
BseNI	ACTGG	1 cut(s)	600
BshNI	GGYRCC	2 cut(s)	6, 508
BshVI	ATCGAT	2 cut(s)	39, 273
BsiSI	CCGG	2 cut(s)	506, 615
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
BsmAI	GTCTC	3 cut(s)	173, 421, 545
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	36, 40
BspACI	CCGC	3 cut(s)	53, 333, 569
BspDI	ATCGAT	2 cut(s)	39, 273
BspLI	GGNNCC	2 cut(s)	8, 510
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	6, 508
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	2 cut(s)	36, 40
Bst4CI	ACNGT	2 cut(s)	438, 520
Bst6I	CTCTTC	4 cut(s)	20, 81, 459, 559
BstC8I	GCNNGC	3 cut(s)	222, 248, 392
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	39, 43
BstMAI	GTCTC	3 cut(s)	173, 421, 545
BstMBI	GATC	2 cut(s)	36, 40
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
BstSCI	CCNGG	1 cut(s)	614
Bsu15I	ATCGAT	2 cut(s)	39, 273
BsuTUI	ATCGAT	2 cut(s)	39, 273
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	2 cut(s)	384, 588
BtsIMutI	CAGTG	2 cut(s)	384, 588
Cac8I	GCNNGC	3 cut(s)	222, 248, 392
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	146, 598
ClaI	ATCGAT	2 cut(s)	39, 273
Csp6I	GTAC	2 cut(s)	118, 283
CviQI	GTAC	2 cut(s)	118, 283
DpnI	GATC	2 cut(s)	38, 42
DpnII	GATC	2 cut(s)	36, 40
Eam1104I	CTCTTC	4 cut(s)	20, 81, 459, 559
EarI	CTCTTC	4 cut(s)	20, 81, 459, 559
EciI	GGCGGA	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	146, 598
EcoT22I	ATGCAT	1 cut(s)	71
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	1 cut(s)	340
FauNDI	CATATG	3 cut(s)	18, 397, 481
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	3 cut(s)	263, 338, 602
GluI	GCNGC	1 cut(s)	570
HapII	CCGG	2 cut(s)	506, 615
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	207, 485
HpaII	CCGG	2 cut(s)	506, 615
HphI	GGTGA	2 cut(s)	46, 601
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	135, 300, 364
Hpy188III	TCNNGA	2 cut(s)	263, 425
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	438, 520
HpyCH4V	TGCA	4 cut(s)	16, 69, 377, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
Kzo9I	GATC	2 cut(s)	36, 40
LguI	GCTCTTC	1 cut(s)	559
LmnI	GCTCC	2 cut(s)	404, 499
LpnPI	CCDG	8 cut(s)	17, 162, 206, 291, 519, 525, 581, 628
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	263, 338, 602
MaeIII	GTNAC	2 cut(s)	514, 607
MalI	GATC	2 cut(s)	38, 42
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	36, 40
MboII	GAAGA	5 cut(s)	37, 98, 278, 476, 576
MluCI	AATT	2 cut(s)	186, 290
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	3 cut(s)	124, 382, 515
MnlI	CCTC	4 cut(s)	21, 55, 307, 613
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	2 cut(s)	506, 615
MspR9I	CCNGG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
NciI	CCSGG	1 cut(s)	616
NdeI	CATATG	3 cut(s)	18, 397, 481
NdeII	GATC	2 cut(s)	36, 40
NlaIV	GGNNCC	2 cut(s)	8, 510
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	2 cut(s)	514, 607
NsiI	ATGCAT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	559
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	8, 510
PspPI	GGNCC	2 cut(s)	146, 598
RsaI	GTAC	2 cut(s)	119, 284
RsaNI	GTAC	2 cut(s)	118, 283
RseI	CAYNNNNRTG	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	2 cut(s)	36, 40
Sau96I	GGNCC	2 cut(s)	146, 598
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	146, 598
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	186, 290
SsiI	CCGC	3 cut(s)	53, 333, 569
SspMI	CTAG	3 cut(s)	263, 338, 602
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	438, 520
TaqI	TCGA	3 cut(s)	39, 273, 433
TasI	AATT	2 cut(s)	186, 290
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	384, 588
TseFI	GTSAC	2 cut(s)	514, 607
Tsp45I	GTSAC	2 cut(s)	514, 607
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	384, 588
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	146, 598
XbaI	TCTAGA	1 cut(s)	262
XspI	CTAG	3 cut(s)	263, 338, 602
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.