Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294957.1

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 504

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

gatatcattagactgccaaggctgttccggtttcttcagaagccattggcgcagtttatatctgttctgagggcaccgaagagcaaagaaggctatgccgcaattggcggtggctctcctctccgaacgataactgatgcacaggcggaagagttgaggaagtctctttgggagaaggatgtcccggccaaagtgtatgttggtatgcgttattggcatccatttactgaagaagctatagaacaggtaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

84

Amino Acids

9.64

Weight (kDa)

9.45

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AciI	CCGC	3 cut(s)	99, 108, 146
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	2 cut(s)	20, 249
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	127, 226
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	184, 217
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	28, 185
BslFI	GGGAC	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	76
BspACI	CCGC	3 cut(s)	99, 108, 146
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	75
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	74, 144
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	184, 217
BstHHI	GCGC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 90, 214
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	184, 217
CfoI	GCGC	1 cut(s)	52
CviJI	RGCY	6 cut(s)	22, 43, 93, 114, 188, 236
CviKI_1	RGCY	6 cut(s)	22, 43, 93, 114, 188, 236
DdeI	CTNAG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	74, 144
EarI	CTCTTC	2 cut(s)	74, 144
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	20, 249
EcoRV	GATATC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaiI	YATR	5 cut(s)	59, 96, 198, 206, 239
FaqI	GGGAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	2 cut(s)	191, 204
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	28, 185
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	28, 185
Hpy188I	TCNGA	3 cut(s)	39, 69, 125
HpyAV	CCTTC	2 cut(s)	83, 169
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 90, 214
HpyF3I	CTNAG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	50
LguI	GCTCTTC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	41, 128, 198, 230
LweI	GCATC	2 cut(s)	127, 226
MboII	GAAGA	4 cut(s)	26, 91, 161, 242
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	102, 249
MnlI	CCTC	3 cut(s)	63, 129, 150
MspI	CCGG	2 cut(s)	28, 185
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	49, 90, 214
NciI	CCSGG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	2 cut(s)	238, 249
SfaNI	GCATC	2 cut(s)	127, 226
SfcI	CTRYAG	1 cut(s)	237
SgeI	CNNG	5 cut(s)	30, 40, 155, 196, 197
Sse9I	AATT	2 cut(s)	102, 249
SsiI	CCGC	3 cut(s)	99, 108, 146
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	17
TasI	AATT	2 cut(s)	102, 249
TauI	GCSGC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.