Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Forward (+)

28361872 .. 28362246

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGACAGAATCCATAGCAATGCTACCCTACACCATCTCCTCCTCCATCCCCTTAGACCACCACAGGCTCCTGCCACGTGTCCTCTCCGTCTCCTCCTCCCACTCCGCCGCTCTCTCCAGAAACTGCTCCTCCTCCTCGTCGGCGGCGGCGCAATCCTCGCCGCTTTTATCGCTCCGGAAGTGCTTGCCGCCGCTAAAAGCGCTTGTGACGGCCGATACTACTCGAACCGCCAATACGACGCCGCTTGGTGTTGACGATAGAGTCGAAGTGTTGTTGCTTAACCTCGGCGGACCGGAGACTCTCGACGACGTCCAACCTTTCTTGTTTAACCTCTTCGCAGATCCGGTAAATTCCTCAAGCTCAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

125

Amino Acids

13.1

Weight (kDa)

6.01

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	91 - 116	6.9e-06	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	177
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	352
AcvI	CACGTG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	242, 312
AfeI	AGCGCT	1 cut(s)	204
AflIII	ACRYGT	1 cut(s)	79
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	97, 293
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	2 cut(s)	154, 205
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	80
BccI	CCATC	2 cut(s)	44, 56
BceAI	ACGGC	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	97, 293
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	7 cut(s)	111, 147, 150, 164, 191, 194, 245
BlsI	GCNGC	7 cut(s)	112, 148, 151, 165, 192, 195, 246
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	242, 312
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	3 cut(s)	177, 295, 346
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 116, 146
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	27
BseRI	GAGGAG	7 cut(s)	31, 34, 85, 88, 121, 124, 127
BseX3I	CGGCCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	178, 296, 347
BsmAI	GTCTC	2 cut(s)	97, 293
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	2 cut(s)	242, 312
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	242, 312
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	55, 364
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	154, 205
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	97, 293
BstMBI	GATC	1 cut(s)	343
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 172, 202
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	154, 205
Cfr13I	GGNCC	1 cut(s)	293
CpoI	CGGWCCG	1 cut(s)	293
CseI	GACGC	1 cut(s)	250
CspI	CGGWCCG	1 cut(s)	293
CviJI	RGCY	3 cut(s)	70, 215, 363
CviKI_1	RGCY	3 cut(s)	70, 215, 363
DdeI	CTNAG	2 cut(s)	55, 364
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	213
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	2 cut(s)	97, 306
EclXI	CGGCCG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	213
Eco72I	CACGTG	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	97
FaiI	YATR	1 cut(s)	17
Fnu4HI	GCNGC	7 cut(s)	111, 147, 150, 164, 191, 194, 245
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	111, 147, 150, 164, 191, 194, 245
GlaI	GCGC	2 cut(s)	153, 204
GluI	GCNGC	7 cut(s)	111, 147, 150, 164, 191, 194, 245
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	3 cut(s)	178, 296, 347
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	154, 205
Hin1I	GRCGYC	2 cut(s)	242, 312
Hin6I	GCGC	2 cut(s)	152, 203
HinP1I	GCGC	2 cut(s)	152, 203
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	11, 264, 301
HpaII	CCGG	3 cut(s)	178, 296, 347
Hpy166II	GTNNAC	2 cut(s)	256, 370
Hpy188III	TCNNGA	3 cut(s)	120, 178, 305
Hpy8I	GTNNAC	2 cut(s)	256, 370
Hpy99I	CGWCG	4 cut(s)	145, 244, 311, 314
HpyCH4IV	ACGT	2 cut(s)	79, 312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 172, 202
HpyF3I	CTNAG	2 cut(s)	55, 364
HpySE526I	ACGT	2 cut(s)	79, 312
Hsp92I	GRCGYC	2 cut(s)	242, 312
HspAI	GCGC	2 cut(s)	152, 203
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	75, 134, 180
LpnPI	CCDG	6 cut(s)	52, 86, 133, 191, 309, 360
MaeII	ACGT	2 cut(s)	79, 312
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	273, 295
MmeI	TCCRAC	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	177
MseI	TTAA	2 cut(s)	282, 330
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	3 cut(s)	178, 296, 347
MwoI	GCNNNNNNNGC	3 cut(s)	160, 172, 202
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	7 cut(s)	112, 148, 151, 165, 192, 195, 246
PleI	GAGTC	2 cut(s)	272, 295
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	2 cut(s)	272, 295
Ppu21I	YACGTR	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	293
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	20
Rsr2I	CGGWCCG	1 cut(s)	293
RsrII	CGGWCCG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	282, 330
SatI	GCNGC	7 cut(s)	111, 147, 150, 164, 191, 194, 245
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	273, 295
SetI	ASST	6 cut(s)	82, 288, 315, 322, 336, 365
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	82, 315
TaqI	TCGA	3 cut(s)	226, 267, 306
TasI	AATT	1 cut(s)	352
TauI	GCSGC	7 cut(s)	113, 149, 152, 166, 193, 196, 247
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	282, 330
Tru9I	TTAA	2 cut(s)	282, 330
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.