pycom04g21160

Catalyzes the ferrous insertion into protoporphyrin IX

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
22461126 .. 22464641
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21160.2

Sequence Viewer

Length: 1245 bp
ATGATAAAGTCGGAGTCTTGCTGCTTAACCTCGGTGGGCCCGAGACTCTCGACGACGTCCAGCCCTTCTTGTTTAACCTCTTCGCCGACCCGCATTAGACTGCCAAGGTTGTTTCGGTTTCTTCAGAAGCCATTGGCGCAGTTTATATCCGCACTGAGGGCGCCAAAGAGTAAAGAAGGCTACGCCTCCATTGGTGGCGGCTCTCCTCTGCGACGAATAACTGATGCACAGGCAGAAGAGTTGAGGAAGGCCCTTTATGCGAAGGATGTCTCGGCAAAAGTGTACGTGGGAATGCGTTATTGGCATCCATTTACTGAAGAAGCTATAGAAGAGATAAAAAGAGATGGAATTACAAAACTTGTTGTCCTTCCACTTTATCCGCAATTTTCAATATCGACTAGTGGTTCAAGCCTTCGGCTCTTGGAGAGTATATTCCGGGAGGATGAATATCTTGTCAACATGCAGCACACAGTTATACCATCTTGGTACCAGCGTGAAGGGTACATAACGGCAATGGCAAATTTGATTGAAAAAGAGCTTCAGCGTTTTGACAGCCCTGAGAAGGTACTGATATTCTTTAGCGCGCATGGGGTGCCACTTGCATATGTGGAAGAGGCTGGTGATCGATACAAGGCGGAGATGGAGGAATGCATAGATTTGATAATGGAAGAGTTGGAAACGAGAAAAATAACTAATGCGTACACCCTTGCCTATCAGAGCAGAGTTGGACCTGTGGAGTGGTTAAAACCTTACACGGATGAGACAATAATTGAGCTTGGGCAGAAGGGAGTTAAAAGGTTGCTGGCAGTCCCAATAAGCTTTGTCAGTGAGCATATTGAAACTCTAGAAGAAATCGATGTTGAGTACAAAGAATTGGCTCTGAAATCTGGTATAGATGTCTGGGGGCGTGTTCCTGCACTAGGATGTGAACCCACCTTCATTTCCGACTTGGCAGACGCGGTGATTGAGAGCTTGCCATATGTTGGAGCTATGGCAGTCTCACATATTGAAGCTCGACAGTCTTTAGTTCCACTTGGGAGTGTGGAAGAGTTGTTAGCGACATATGATTCACAGCGTAGGGAGCTACCGGCACCTGTGACAGTTTGGGAATGGGGTTGGACAAAAAGTGCCGAGACTTGGAACGGAAGAGCAGCTATGTTGGCAGTGGTGGTTCTTCTGGTCCTAGAAGTCACCACCGGGGAAGGGTTTCTGCACCAATGGGGCATATTGCCTTTACATCGTTAA

Protein Analysis

415

Amino Acids

46.56

Weight (kDa)

5.35

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 59
Acc65I GGTACC 1 cut(s) 486
AccB1I GGYRCC 4 cut(s) 160, 486, 592, 1090
AccB7I CCANNNNNTGG 1 cut(s) 983
AccII CGCG 2 cut(s) 584, 959
AciI CCGC 6 cut(s) 91, 150, 198, 380, 635, 959
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 3 cut(s) 107, 336, 524
AcyI GRCGYC 2 cut(s) 56, 161
AfaI GTAC 6 cut(s) 284, 488, 503, 567, 701, 866
AfiI CCNNNNNNNGG 6 cut(s) 156, 562, 920, 983, 1137, 1203
AgsI TTSAA 5 cut(s) 390, 408, 530, 839, 1010
AhlI ACTAGT 1 cut(s) 398
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 9 cut(s) 323, 538, 775, 819, 972, 989, 1013, 1084, 1154
AluI AGCT 9 cut(s) 323, 538, 775, 819, 972, 989, 1013, 1084, 1154
Alw26I GTCTC 5 cut(s) 37, 274, 755, 1003, 1127
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 2 cut(s) 37, 249
ApaI GGGCCC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 21, 463, 1151
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 1206
Asp718I GGTACC 1 cut(s) 486
AspLEI GCGC 4 cut(s) 139, 163, 584, 586
AspS9I GGNCC 5 cut(s) 37, 38, 250, 728, 1180
AsuC2I CCSGG 2 cut(s) 437, 1198
AsuHPI GGTGA 3 cut(s) 632, 973, 1183
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 728, 1180
BaeGI GKGCMC 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 478, 511
BanI GGYRCC 4 cut(s) 160, 486, 592, 1090
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 8, 475, 1163
BccI CCATC 3 cut(s) 338, 487, 634
BceAI ACGGC 1 cut(s) 525
BcnI CCSGG 2 cut(s) 437, 1198
BcoDI GTCTC 5 cut(s) 37, 274, 755, 1003, 1127
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 4 cut(s) 399, 845, 920, 1184
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 4 cut(s) 22, 199, 464, 1152
BlsI GCNGC 4 cut(s) 23, 200, 465, 1153
Bme1390I CCNGG 2 cut(s) 437, 1198
Bme18I GGWCC 2 cut(s) 728, 1180
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 5 cut(s) 37, 38, 250, 728, 1180
BmiI GGNNCC 5 cut(s) 39, 162, 488, 594, 1092
BmrFI CCNGG 2 cut(s) 437, 1198
BmsI GCATC 2 cut(s) 214, 313
BpuMI CCSGG 2 cut(s) 437, 1198
Bsa29I ATCGAT 2 cut(s) 625, 855
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 2 cut(s) 56, 161
BsaJI CCNNGG 3 cut(s) 30, 104, 1197
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 562, 920, 983, 1137, 1203
Bse118I RCCGGY 1 cut(s) 1087
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 447
BseCI ATCGAT 2 cut(s) 625, 855
BseDI CCNNGG 3 cut(s) 30, 104, 1197
BseGI GGATG 5 cut(s) 271, 304, 448, 763, 929
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 6 cut(s) 156, 562, 920, 983, 1137, 1203
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 146, 549
BsePI GCGCGC 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 3 cut(s) 8, 475, 1163
BsgI GTGCAG 2 cut(s) 900, 1196
Bsh1236I CGCG 2 cut(s) 584, 959
BshFI GGCC 2 cut(s) 39, 251
BshNI GGYRCC 4 cut(s) 160, 486, 592, 1090
BshVI ATCGAT 2 cut(s) 625, 855
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 436, 1088, 1197
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 6 cut(s) 156, 562, 920, 983, 1137, 1203
BsmAI GTCTC 5 cut(s) 37, 274, 755, 1003, 1127
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 2 cut(s) 297, 653
BsnI GGCC 2 cut(s) 39, 251
BsoBI CYCGRG 1 cut(s) 40
Bsp120I GGGCCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 622
BspACI CCGC 6 cut(s) 91, 150, 198, 380, 635, 959
BspANI GGCC 2 cut(s) 39, 251
BspCNI CTCAG 2 cut(s) 147, 550
BspDI ATCGAT 2 cut(s) 625, 855
BspFNI CGCG 2 cut(s) 584, 959
BspLI GGNNCC 5 cut(s) 39, 162, 488, 594, 1092
BspQI GCTCTTC 1 cut(s) 1141
BspT107I GGYRCC 4 cut(s) 160, 486, 592, 1090
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 1087
BssAI RCCGGY 1 cut(s) 1087
BssECI CCNNGG 3 cut(s) 30, 104, 1197
BssHII GCGCGC 1 cut(s) 582
BssMI GATC 1 cut(s) 622
BssNI GRCGYC 2 cut(s) 56, 161
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 472, 1020, 1102
Bst6I CTCTTC 7 cut(s) 85, 231, 324, 606, 663, 1041, 1141
BstACI GRCGYC 2 cut(s) 56, 161
BstAPI GCANNNNNTGC 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 584, 804, 974
BstDEI CTNAG 2 cut(s) 155, 558
BstENI CCTNNNNNAGG 1 cut(s) 918
BstF5I GGATG 5 cut(s) 271, 304, 448, 763, 929
BstFNI CGCG 2 cut(s) 584, 959
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 4 cut(s) 139, 163, 584, 586
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 5 cut(s) 37, 274, 755, 1003, 1127
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 7 cut(s) 136, 158, 257, 301, 592, 1081, 1160
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 435, 1196
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 584, 959
BstV1I GCAGC 3 cut(s) 8, 475, 1163
Bsu15I ATCGAT 2 cut(s) 625, 855
BsuRI GGCC 2 cut(s) 39, 251
BsuTUI ATCGAT 2 cut(s) 625, 855
BtsCI GGATG 5 cut(s) 271, 304, 448, 763, 929
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 3 cut(s) 152, 832, 1170
Cac8I GCNNGC 3 cut(s) 584, 804, 974
CfoI GCGC 4 cut(s) 139, 163, 584, 586
Cfr10I RCCGGY 1 cut(s) 1087
Cfr13I GGNCC 5 cut(s) 37, 38, 250, 728, 1180
ClaI ATCGAT 2 cut(s) 625, 855
CseI GACGC 1 cut(s) 965
Csp6I GTAC 6 cut(s) 283, 487, 502, 566, 700, 865
CviAII CATG 2 cut(s) 460, 587
CviQI GTAC 6 cut(s) 283, 487, 502, 566, 700, 865
DdeI CTNAG 2 cut(s) 155, 558
DinI GGCGCC 1 cut(s) 162
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
Eam1104I CTCTTC 7 cut(s) 85, 231, 324, 606, 663, 1041, 1141
EarI CTCTTC 7 cut(s) 85, 231, 324, 606, 663, 1041, 1141
EciI GGCGGA 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 728, 1180
Eco57I CTGAAG 3 cut(s) 107, 336, 524
Eco88I CYCGRG 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 162
EheI GGCGCC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 463, 590
FaqI GGGAC 1 cut(s) 794
FatI CATG 2 cut(s) 459, 586
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 3 cut(s) 604, 979, 1063
Fnu4HI GCNGC 4 cut(s) 22, 199, 464, 1152
FokI GGATG 5 cut(s) 278, 291, 455, 770, 936
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 22, 199, 464, 1152
FspBI CTAG 4 cut(s) 399, 845, 920, 1184
GlaI GCGC 4 cut(s) 138, 162, 583, 585
GluI GCNGC 4 cut(s) 22, 199, 464, 1152
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 39, 251
HapII CCGG 3 cut(s) 436, 1088, 1197
HgaI GACGC 1 cut(s) 965
HhaI GCGC 4 cut(s) 139, 163, 584, 586
Hin1I GRCGYC 2 cut(s) 56, 161
Hin1II CATG 2 cut(s) 463, 590
Hin6I GCGC 4 cut(s) 137, 161, 582, 584
HinP1I GCGC 4 cut(s) 137, 161, 582, 584
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 3 cut(s) 14, 45, 1067
HpaII CCGG 3 cut(s) 436, 1088, 1197
HphI GGTGA 3 cut(s) 632, 973, 1183
Hpy166II GTNNAC 4 cut(s) 283, 457, 702, 929
Hpy188I TCNGA 5 cut(s) 13, 126, 717, 882, 946
Hpy188III TCNNGA 2 cut(s) 49, 845
Hpy8I GTNNAC 4 cut(s) 283, 457, 702, 929
Hpy99I CGWCG 3 cut(s) 55, 58, 216
HpyCH4III ACNGT 3 cut(s) 472, 1020, 1102
HpyCH4IV ACGT 2 cut(s) 56, 285
HpyCH4V TGCA 6 cut(s) 227, 463, 602, 651, 917, 1213
HpyF10VI GCNNNNNNNGC 7 cut(s) 136, 158, 257, 301, 592, 1081, 1160
HpyF3I CTNAG 2 cut(s) 155, 558
HpySE526I ACGT 2 cut(s) 56, 285
Hsp92I GRCGYC 2 cut(s) 56, 161
Hsp92II CATG 2 cut(s) 463, 590
HspAI GCGC 4 cut(s) 137, 161, 582, 584
KasI GGCGCC 1 cut(s) 160
KpnI GGTACC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 622
LguI GCTCTTC 1 cut(s) 1141
LmnI GCTCC 2 cut(s) 986, 1081
Lsp1109I GCAGC 3 cut(s) 8, 475, 1163
LweI GCATC 2 cut(s) 214, 313
MaeI CTAG 4 cut(s) 399, 845, 920, 1184
MaeII ACGT 2 cut(s) 56, 285
MaeIII GTNAC 2 cut(s) 1096, 1189
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 5 cut(s) 348, 383, 520, 768, 872
Mly113I GGCGCC 1 cut(s) 161
MlyI GAGTC 2 cut(s) 23, 39
MmeI TCCRAC 5 cut(s) 654, 706, 964, 969, 1097
MnlI CCTC 9 cut(s) 40, 88, 150, 196, 216, 237, 433, 607, 637
Mph1103I ATGCAT 1 cut(s) 653
MroXI GAANNNNTTC 1 cut(s) 1206
MseI TTAA 5 cut(s) 26, 74, 743, 792, 1243
MslI CAYNNNNRTG 1 cut(s) 922
MspI CCGG 3 cut(s) 436, 1088, 1197
MspR9I CCNGG 2 cut(s) 437, 1198
Mva1269I GAATGC 2 cut(s) 297, 653
MvnI CGCG 2 cut(s) 584, 959
MwoI GCNNNNNNNGC 7 cut(s) 136, 158, 257, 301, 592, 1081, 1160
NarI GGCGCC 1 cut(s) 161
NciI CCSGG 2 cut(s) 437, 1198
NdeI CATATG 3 cut(s) 604, 979, 1063
NdeII GATC 1 cut(s) 622
NlaIII CATG 2 cut(s) 463, 590
NlaIV GGNNCC 5 cut(s) 39, 162, 488, 594, 1092
NmeAIII GCCGAG 2 cut(s) 251, 1156
NmuCI GTSAC 2 cut(s) 1096, 1189
NsiI ATGCAT 1 cut(s) 653
NspI RCATGY 1 cut(s) 463
PauI GCGCGC 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 1141
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 2 cut(s) 297, 653
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 1 cut(s) 1067
PflFI GACNNNGTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 983
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 4 cut(s) 23, 200, 465, 1153
PleI GAGTC 2 cut(s) 22, 39
PluTI GGCGCC 1 cut(s) 164
PpsI GAGTC 2 cut(s) 22, 39
Ppu21I YACGTR 1 cut(s) 286
PspN4I GGNNCC 5 cut(s) 39, 162, 488, 594, 1092
PspOMI GGGCCC 1 cut(s) 37
PspPI GGNCC 5 cut(s) 37, 38, 250, 728, 1180
PsyI GACNNNGTC 1 cut(s) 55
PteI GCGCGC 1 cut(s) 582
RsaI GTAC 6 cut(s) 284, 488, 503, 567, 701, 866
RsaNI GTAC 6 cut(s) 283, 487, 502, 566, 700, 865
RseI CAYNNNNRTG 1 cut(s) 922
SapI GCTCTTC 1 cut(s) 1141
SaqAI TTAA 5 cut(s) 26, 74, 743, 792, 1243
SatI GCNGC 4 cut(s) 22, 199, 464, 1152
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 5 cut(s) 37, 38, 250, 728, 1180
SchI GAGTC 2 cut(s) 23, 39
ScrFI CCNGG 2 cut(s) 437, 1198
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 2 cut(s) 214, 313
SfcI CTRYAG 1 cut(s) 324
SfoI GGCGCC 1 cut(s) 162
SinI GGWCC 2 cut(s) 728, 1180
SmiMI CAYNNNNRTG 1 cut(s) 922
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 5 cut(s) 348, 383, 520, 768, 872
SsiI CCGC 6 cut(s) 91, 150, 198, 380, 635, 959
SspDI GGCGCC 1 cut(s) 160
SspMI CTAG 4 cut(s) 399, 845, 920, 1184
StyD4I CCNGG 2 cut(s) 435, 1196
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 472, 1020, 1102
TaiI ACGT 2 cut(s) 59, 288
TaqI TCGA 5 cut(s) 50, 395, 625, 855, 1015
TasI AATT 5 cut(s) 348, 383, 520, 768, 872
TatI WGTACW 1 cut(s) 864
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 1067
Tru1I TTAA 5 cut(s) 26, 74, 743, 792, 1243
Tru9I TTAA 5 cut(s) 26, 74, 743, 792, 1243
TscAI CASTG 3 cut(s) 159, 832, 1170
TseFI GTSAC 2 cut(s) 1096, 1189
TseI GCWGC 3 cut(s) 21, 463, 1151
Tsp45I GTSAC 2 cut(s) 1096, 1189
TspDTI ATGAA 2 cut(s) 459, 928
TspGWI ACGGA 2 cut(s) 770, 1158
TspRI CASTG 3 cut(s) 159, 832, 1170
Tth111I GACNNNGTC 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 983
VpaK11BI GGWCC 2 cut(s) 728, 1180
XagI CCTNNNNNAGG 1 cut(s) 918
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 4 cut(s) 399, 845, 920, 1184
ZraI GACGTC 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.