Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484981.1

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Reverse (-)

546 .. 2155

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgatattcttcagcgcccatggagtgccacttgcatatgtggaagaggctggtgatccgtacaaggcagaaatggaggaatgtatagatttgattatggaagaattagaaaagagaaatataactaatgcatacacccttgcctatcagagcagagtcggacctgtggaatggttaagaccttatacggatgagacaataattgagcttgggcaaaagggagttaaaaggctgttggcagtccctataagctttgtcagtgagcatattgaaactctagaagaaattgatgtggagtacaaagaattggctctaaaatctggaatagagatttgggggcgtgttcctgcacttggatgtgaggccacattcatttcagatctagcagacgctgtgattgagagcctgccatatgttggagctatggcagtctcaaatcttgaagctcgacagtctttagttccacttgggagtgtagaagagttgttagcagcatatgattcacagcggagggagctaccaccgcctgtgacagtttgggaatggggctggaccaaaagtgccgagacttggaatggaagagcagctatgttggcagtggttgttctattggtcctagaagtcaccactggggaggggtttctgcaccaatggggcatattacccttgcatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

225

Amino Acids

25.08

Weight (kDa)

4.5

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	2 cut(s)	508, 524
AclWI	GGATC	1 cut(s)	50
AfaI	GTAC	2 cut(s)	62, 299
AfiI	CCNNNNNNNGG	3 cut(s)	353, 416, 570
AgsI	TTSAA	2 cut(s)	272, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
AluBI	AGCT	6 cut(s)	208, 252, 422, 446, 517, 587
AluI	AGCT	6 cut(s)	208, 252, 422, 446, 517, 587
Alw26I	GTCTC	3 cut(s)	188, 436, 560
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	491, 584
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	161, 552, 613
AsuHPI	GGTGA	2 cut(s)	65, 616
AvaII	GGWCC	3 cut(s)	161, 552, 613
BbvI	GCAGC	2 cut(s)	503, 596
BcoDI	GTCTC	3 cut(s)	188, 436, 560
BfaI	CTAG	3 cut(s)	278, 383, 617
BfoI	RGCGCY	1 cut(s)	18
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	2 cut(s)	492, 585
BlsI	GCNGC	2 cut(s)	493, 586
Bme18I	GGWCC	3 cut(s)	161, 552, 613
BmgT120I	GGNCC	3 cut(s)	161, 552, 613
BmrI	ACTGGG	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 416, 570
Bse1I	ACTGG	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	196, 362, 670
BseLI	CCNNNNNNNGG	3 cut(s)	353, 416, 570
BseNI	ACTGG	1 cut(s)	634
BseXI	GCAGC	2 cut(s)	503, 596
BsgI	GTGCAG	2 cut(s)	333, 629
BshFI	GGCC	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	353, 416, 570
BsmAI	GTCTC	3 cut(s)	188, 436, 560
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	55, 379
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	2 cut(s)	508, 524
BspANI	GGCC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	55, 379
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	453, 535
Bst6I	CTCTTC	3 cut(s)	39, 474, 574
BstC8I	GCNNGC	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	196, 362, 670
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	58, 382
BstMAI	GTCTC	3 cut(s)	188, 436, 560
BstMBI	GATC	2 cut(s)	55, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	514, 523, 593
BstV1I	GCAGC	2 cut(s)	503, 596
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	196, 362, 670
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	265, 603, 627
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	161, 552, 613
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	61, 298
CviAII	CATG	2 cut(s)	20, 675
CviQI	GTAC	2 cut(s)	61, 298
DpnI	GATC	2 cut(s)	57, 381
DpnII	GATC	2 cut(s)	55, 379
Eam1104I	CTCTTC	3 cut(s)	39, 474, 574
EarI	CTCTTC	3 cut(s)	39, 474, 574
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	161, 552, 613
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	23, 678
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	19, 674
FauNDI	CATATG	3 cut(s)	37, 412, 496
Fnu4HI	GCNGC	2 cut(s)	492, 585
FokI	GGATG	3 cut(s)	203, 369, 657
Fsp4HI	GCNGC	2 cut(s)	492, 585
FspBI	CTAG	3 cut(s)	278, 383, 617
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	492, 585
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	365
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	23, 678
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	2 cut(s)	156, 500
HphI	GGTGA	2 cut(s)	65, 616
Hpy188I	TCNGA	3 cut(s)	150, 161, 379
Hpy188III	TCNNGA	3 cut(s)	278, 321, 440
HpyCH4III	ACNGT	2 cut(s)	453, 535
HpyCH4V	TGCA	5 cut(s)	35, 131, 350, 646, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	514, 523, 593
Hsp92II	CATG	2 cut(s)	23, 678
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	55, 379
LguI	GCTCTTC	1 cut(s)	574
LmnI	GCTCC	2 cut(s)	419, 514
LpnPI	CCDG	8 cut(s)	36, 177, 306, 360, 419, 535, 540, 615
Lsp1109I	GCAGC	2 cut(s)	503, 596
MaeI	CTAG	3 cut(s)	278, 383, 617
MaeIII	GTNAC	2 cut(s)	529, 622
MalI	GATC	2 cut(s)	57, 381
MboI	GATC	2 cut(s)	55, 379
MboII	GAAGA	5 cut(s)	56, 113, 293, 491, 591
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	4 cut(s)	104, 201, 285, 305
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	2 cut(s)	139, 397
MnlI	CCTC	5 cut(s)	40, 70, 355, 504, 628
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	2 cut(s)	176, 225
MslI	CAYNNNNRTG	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	514, 523, 593
NcoI	CCATGG	1 cut(s)	19
NdeI	CATATG	3 cut(s)	37, 412, 496
NdeII	GATC	2 cut(s)	55, 379
NlaIII	CATG	2 cut(s)	23, 678
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	2 cut(s)	529, 622
NsiI	ATGCAT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	493, 586
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	161, 552, 613
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	62, 299
RsaNI	GTAC	2 cut(s)	61, 298
RseI	CAYNNNNRTG	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	176, 225
SatI	GCNGC	2 cut(s)	492, 585
Sau3AI	GATC	2 cut(s)	55, 379
Sau96I	GGNCC	3 cut(s)	161, 552, 613
SchI	GAGTC	1 cut(s)	165
SetI	ASST	8 cut(s)	166, 184, 210, 254, 424, 448, 519, 589
SinI	GGWCC	3 cut(s)	161, 552, 613
SmiMI	CAYNNNNRTG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	104, 201, 285, 305
SsiI	CCGC	2 cut(s)	508, 524
SspMI	CTAG	3 cut(s)	278, 383, 617
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	453, 535
TaqI	TCGA	1 cut(s)	448
TasI	AATT	4 cut(s)	104, 201, 285, 305
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	176, 225
Tru9I	TTAA	2 cut(s)	176, 225
TscAI	CASTG	3 cut(s)	265, 603, 634
TseFI	GTSAC	2 cut(s)	529, 622
TseI	GCWGC	2 cut(s)	491, 584
Tsp45I	GTSAC	2 cut(s)	529, 622
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	48, 203
TspRI	CASTG	3 cut(s)	265, 603, 634
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	3 cut(s)	161, 552, 613
XbaI	TCTAGA	1 cut(s)	277
XspI	CTAG	3 cut(s)	278, 383, 617
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.