Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Reverse (-)

1298132 .. 1298446

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02572.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGCAGAATCCATAGCAATGCTACCCTACACCATCTCCTCCTCCATCCCCTTAGACCACCACAGGCTCCTGCCACGTGTCCTCTCCGTCTCCTCCTCCCACTCCGCCGCTCACTCCAGAAACTGCTCCTCGTCGTCCGCGACGGCGCAATCCTCACCGCTTTTATCGCTCCGGAAGTGCTTGCCGCCGCTAAAAGCGCTTGTGACGGCCGATACTGCTCGAACCGCCAATACGACGCCGCTTGGTGTTGACGATAGAGTCGGAGTGTTGTTGCTTAACCTCGGCGAACCGGAGACTCTCGACGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

105

Amino Acids

10.92

Weight (kDa)

6.38

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	9 cut(s)	5, 108, 111, 141, 161, 188, 191, 228, 242
AcoI	YGGCCR	1 cut(s)	210
AcvI	CACGTG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	239, 309
AfeI	AGCGCT	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	97, 290
AlwNI	CAGNNNCTG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	174
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	151, 202
AsuHPI	GGTGA	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	80
BccI	CCATC	2 cut(s)	44, 56
BceAI	ACGGC	2 cut(s)	162, 225
BcoDI	GTCTC	2 cut(s)	97, 290
BfaI	CTAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	5 cut(s)	6, 111, 188, 191, 242
BlsI	GCNGC	5 cut(s)	7, 112, 189, 192, 243
BmiI	GGNNCC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	239, 309
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	2 cut(s)	174, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	27
BseRI	GAGGAG	5 cut(s)	31, 34, 85, 88, 121
BseX3I	CGGCCG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	175, 293
BsmAI	GTCTC	2 cut(s)	97, 290
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	212
Bsp13I	TCCGGA	1 cut(s)	174
BspACI	CCGC	9 cut(s)	5, 108, 111, 141, 161, 188, 191, 228, 242
BspANI	GGCC	1 cut(s)	212
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	283
BssNI	GRCGYC	2 cut(s)	239, 309
BstACI	GRCGYC	2 cut(s)	239, 309
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	151, 202
BstMAI	GTCTC	2 cut(s)	97, 290
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 199, 218, 227
BstUI	CGCG	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	151, 202
CseI	GACGC	1 cut(s)	247
CviJI	RGCY	2 cut(s)	70, 212
CviKI_1	RGCY	2 cut(s)	70, 212
DdeI	CTNAG	1 cut(s)	55
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	210
Eco47III	AGCGCT	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	210
Eco72I	CACGTG	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	97
FaiI	YATR	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	6, 111, 188, 191, 242
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	6, 111, 188, 191, 242
FspBI	CTAG	1 cut(s)	313
GlaI	GCGC	2 cut(s)	150, 201
GluI	GCNGC	5 cut(s)	6, 111, 188, 191, 242
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	175, 293
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	151, 202
Hin1I	GRCGYC	2 cut(s)	239, 309
Hin6I	GCGC	2 cut(s)	149, 200
HinP1I	GCGC	2 cut(s)	149, 200
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	11, 261, 298
HpaII	CCGG	2 cut(s)	175, 293
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	120, 175, 302
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	5 cut(s)	139, 148, 241, 308, 311
HpyCH4IV	ACGT	2 cut(s)	79, 309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 199, 218, 227
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	2 cut(s)	79, 309
Hsp92I	GRCGYC	2 cut(s)	239, 309
HspAI	GCGC	2 cut(s)	149, 200
Kpn2I	TCCGGA	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	75, 134, 177
LpnPI	CCDG	5 cut(s)	52, 86, 133, 188, 306
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	2 cut(s)	79, 309
MaeIII	GTNAC	1 cut(s)	205
MbiI	CCGCTC	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	270, 292
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	8 cut(s)	52, 55, 95, 106, 109, 142, 166, 293
MroI	TCCGGA	1 cut(s)	174
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	2 cut(s)	175, 293
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	169, 199, 218, 227
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	7, 112, 189, 192, 243
PleI	GAGTC	2 cut(s)	269, 292
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	2 cut(s)	269, 292
Ppu21I	YACGTR	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PstNI	CAGNNNCTG	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	5 cut(s)	6, 111, 188, 191, 242
SchI	GAGTC	2 cut(s)	270, 292
SetI	ASST	3 cut(s)	82, 285, 312
SmiMI	CAYNNNNRTG	1 cut(s)	20
SsiI	CCGC	9 cut(s)	5, 108, 111, 141, 161, 188, 191, 228, 242
SspMI	CTAG	1 cut(s)	313
TaiI	ACGT	2 cut(s)	82, 312
TaqI	TCGA	2 cut(s)	223, 303
TauI	GCSGC	5 cut(s)	8, 113, 190, 193, 244
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	308
XspI	CTAG	1 cut(s)	313
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.