Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Reverse (-)

22310821 .. 22313160

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAGGAAACGGCGGCTGCTTTTCAAGTTTCATTCAGAGTTCAAAGCCATACATAGCTATGATTTCTCTGCAATTCGGCTATGCCGGAATGAACATCATCACTAAGGTTTCGCTCAATCGTGGAATGAGCCACTATGTGCTTGTTGTTTACAGGCACGCCTTCGCCACTGCAGCTATTGCTCCATTTGCTCTTGTTCTTGAGAGGAAAATAAGACCCAAGATTACATTTCCCGTTTTCATGAAACTTTTTGTACTGGGTCTTCTTGGGCCAGTGATTGATCAAAACTTCTACTATGCCGGACTGAAGTTCACATCCCCCACCTTCTCTTGTGCCATGAGTAACATGCTCCCAGCAATGACATTTGTCATGGCCGTCCTTTGCAGGATGGAAAAGCTGGAGATGAAGAAGGTTAGATGTCAAGCGAAGCTGATAGGCACTATAGTGACAGTGGCCGGAGCCATGTTGATGACGTTGTACAAAGGAAACATCATTAGCTTTCCCTGGTCGGCTCACTCGAACAACACCAATAATGCCTCTAGTGCAACTAATAATGAGGACAAGGACTGGCTCAAGGGATCCATTCTGCTCATCTTGGCCACCTTTGCCTGGGCGTCTTTCTTTATCATTCAGGCAGTGACACAGAAGAGGTACCAGGCTCCTCTATCCCTCACCGCAATCGTCTGCTTCTTGGGCACTCTCCAGTCCATAGCGGTTACTTTCGTCATGGAACACAAGCCGGCAGCTTGGACCATTGGTTGGGACATGAACCTTCTTGCTGCTGCATATGCTGGCATAGTTTCATCGAGCCTTGCATACTACATTCAAGGGCTGGTGATGCAGAAAACAGGTCCGGTTTTTGTCACCGCTTTCAGCCCTCTTATGATGATCATTGTTGCTGTCATGGGTTCTTTCATCCTTGCTGAGAAGATATATCTGGGAGGAGTTCTGGGTGCTGTATTGATTGTCATGGGACTCTACTCGGTTCTCTGGGGCAAGTACAAGGAGTACAAAGAAAAAGAAGCTGAGAGCTTTAAAATTCCTCAAGCAATAAAGGGTAGCACAGCTACTACAGGAGATATCACTGCTAGCTTACAAGACATTGAAATTCAAAAGAGCACCCAACCTAACCCCAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

381

Amino Acids

41.67

Weight (kDa)

9.42

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 158	2.6e-12	EamA-like transporter family
EamA	PF00892	192 - 330	1.6e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	4 cut(s)	15, 675, 713, 867
AclWI	GGATC	2 cut(s)	573, 586
AcoI	YGGCCR	3 cut(s)	372, 453, 597
AcsI	RAATTY	2 cut(s)	1038, 1107
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	614
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	5 cut(s)	255, 479, 653, 1001, 1010
AfiI	CCNNNNNNNGG	2 cut(s)	609, 759
AgsI	TTSAA	5 cut(s)	27, 45, 827, 1106, 1112
AjnI	CCWGG	3 cut(s)	503, 608, 654
AleI	CACNNNNGTG	1 cut(s)	443
Alw21I	GWGCWC	1 cut(s)	1121
AlwI	GGATC	2 cut(s)	573, 586
AoxI	GGCC	4 cut(s)	269, 372, 453, 597
ApeKI	GCWGC	5 cut(s)	18, 173, 743, 779, 782
ApoI	RAATTY	2 cut(s)	1038, 1107
Asp718I	GGTACC	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	269, 750, 851
AsuHPI	GGTGA	3 cut(s)	664, 847, 856
AsuNHI	GCTAGC	1 cut(s)	1088
AvaII	GGWCC	2 cut(s)	750, 851
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	651
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	1121
BbvI	GCAGC	5 cut(s)	5, 185, 755, 766, 769
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	28, 359
BciT130I	CCWGG	3 cut(s)	505, 610, 656
BclI	TGATCA	2 cut(s)	280, 888
BfaI	CTAG	2 cut(s)	540, 1089
BfmI	CTRYAG	3 cut(s)	171, 441, 1071
BisI	GCNGC	6 cut(s)	16, 19, 174, 744, 780, 783
BlsI	GCNGC	6 cut(s)	17, 20, 175, 745, 781, 784
Bme1390I	CCNGG	3 cut(s)	505, 610, 656
Bme18I	GGWCC	2 cut(s)	750, 851
BmgT120I	GGNCC	3 cut(s)	269, 750, 851
BmiI	GGNNCC	4 cut(s)	460, 580, 653, 660
BmrFI	CCNGG	3 cut(s)	505, 610, 656
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	828
BmtI	GCTAGC	1 cut(s)	1092
BmuI	ACTGGG	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	2 cut(s)	419, 686
BpuEI	CTTGAG	3 cut(s)	221, 557, 1029
BsaHI	GRCGYC	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	503, 609, 1134
BsaWI	WCCGGW	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	2 cut(s)	609, 759
Bse118I	RCCGGY	1 cut(s)	739
Bse1I	ACTGG	4 cut(s)	261, 272, 572, 703
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	505, 610, 656
BseDI	CCNNGG	3 cut(s)	503, 609, 1134
BseGI	GGATG	3 cut(s)	314, 393, 915
BseLI	CCNNNNNNNGG	2 cut(s)	609, 759
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	915, 1017
BseNI	ACTGG	4 cut(s)	261, 272, 572, 703
BseRI	GAGGAG	2 cut(s)	651, 957
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	5 cut(s)	5, 185, 755, 766, 769
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	4 cut(s)	271, 374, 455, 599
BshNI	GGYRCC	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	1121
BsiSI	CCGG	5 cut(s)	87, 300, 456, 740, 854
BslFI	GGGAC	2 cut(s)	776, 987
BslI	CCNNNNNNNGG	2 cut(s)	609, 759
BsmFI	GGGAC	2 cut(s)	776, 987
BsnI	GGCC	4 cut(s)	271, 374, 455, 599
Bsp1286I	GDGCHC	2 cut(s)	698, 1121
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	280, 578, 888
BspACI	CCGC	4 cut(s)	15, 675, 713, 867
BspANI	GGCC	4 cut(s)	271, 374, 455, 599
BspCNI	CTCAG	2 cut(s)	916, 1018
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	460, 580, 653, 660
BspMAI	CTGCAG	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	1092
BspPI	GGATC	2 cut(s)	573, 586
BspT107I	GGYRCC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	739
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	4 cut(s)	261, 272, 572, 703
BssAI	RCCGGY	1 cut(s)	739
BssECI	CCNNGG	3 cut(s)	503, 609, 1134
BssMI	GATC	3 cut(s)	280, 578, 888
BssNI	GRCGYC	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	1134
Bst2UI	CCWGG	3 cut(s)	505, 610, 656
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	4 cut(s)	159, 741, 793, 1090
BstDEI	CTNAG	3 cut(s)	105, 924, 1026
BstF5I	GGATG	3 cut(s)	314, 393, 915
BstKTI	GATC	3 cut(s)	283, 581, 891
BstMBI	GATC	3 cut(s)	280, 578, 888
BstMWI	GCNNNNNNNGC	8 cut(s)	173, 179, 188, 542, 605, 693, 788, 838
BstNI	CCWGG	3 cut(s)	505, 610, 656
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	503, 608, 654
BstSFI	CTRYAG	3 cut(s)	171, 441, 1071
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	5 cut(s)	5, 185, 755, 766, 769
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	4 cut(s)	271, 374, 455, 599
BtsCI	GGATG	3 cut(s)	314, 393, 915
BtsI	GCAGTG	3 cut(s)	168, 642, 1083
BtsIMutI	CAGTG	5 cut(s)	168, 279, 456, 642, 1083
Cac8I	GCNNGC	4 cut(s)	159, 741, 793, 1090
CciI	TCATGA	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	269, 750, 851
CseI	GACGC	1 cut(s)	603
Csp6I	GTAC	5 cut(s)	254, 478, 652, 1000, 1009
CviAII	CATG	9 cut(s)	241, 337, 346, 370, 463, 727, 766, 904, 970
CviQI	GTAC	5 cut(s)	254, 478, 652, 1000, 1009
DdeI	CTNAG	3 cut(s)	105, 924, 1026
DpnI	GATC	3 cut(s)	282, 580, 890
DpnII	GATC	3 cut(s)	280, 578, 888
DraI	TTTAAA	1 cut(s)	1036
DraIII	CACNNNGTG	1 cut(s)	139
EaeI	YGGCCR	3 cut(s)	372, 453, 597
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	1134
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	2 cut(s)	750, 851
Eco57I	CTGAAG	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	503, 608, 654
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	1 cut(s)	1134
ErhI	CCWWGG	1 cut(s)	1134
FaeI	CATG	9 cut(s)	244, 340, 349, 373, 466, 730, 769, 907, 973
FaqI	GGGAC	2 cut(s)	776, 987
FatI	CATG	9 cut(s)	240, 336, 345, 369, 462, 726, 765, 903, 969
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	2 cut(s)	280, 888
Fnu4HI	GCNGC	6 cut(s)	16, 19, 174, 744, 780, 783
FokI	GGATG	3 cut(s)	301, 400, 902
Fsp4HI	GCNGC	6 cut(s)	16, 19, 174, 744, 780, 783
FspBI	CTAG	2 cut(s)	540, 1089
GluI	GCNGC	6 cut(s)	16, 19, 174, 744, 780, 783
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	2 cut(s)	419, 686
HaeIII	GGCC	4 cut(s)	271, 374, 455, 599
HapII	CCGG	5 cut(s)	87, 300, 456, 740, 854
HgaI	GACGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	614
Hin1II	CATG	9 cut(s)	244, 340, 349, 373, 466, 730, 769, 907, 973
HinfI	GANTC	1 cut(s)	975
HpaII	CCGG	5 cut(s)	87, 300, 456, 740, 854
HphI	GGTGA	3 cut(s)	664, 847, 856
Hpy166II	GTNNAC	2 cut(s)	151, 312
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	2 cut(s)	200, 241
Hpy8I	GTNNAC	2 cut(s)	151, 312
HpyAV	CCTTC	4 cut(s)	172, 334, 403, 782
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	7 cut(s)	73, 173, 384, 545, 785, 815, 841
HpyF10VI	GCNNNNNNNGC	8 cut(s)	173, 179, 188, 542, 605, 693, 788, 838
HpyF3I	CTNAG	3 cut(s)	105, 924, 1026
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	614
Hsp92II	CATG	9 cut(s)	244, 340, 349, 373, 466, 730, 769, 907, 973
KpnI	GGTACC	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Ksp22I	TGATCA	2 cut(s)	280, 888
Kzo9I	GATC	3 cut(s)	280, 578, 888
LmnI	GCTCC	4 cut(s)	187, 354, 458, 664
Lsp1109I	GCAGC	5 cut(s)	5, 185, 755, 766, 769
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	2 cut(s)	540, 1089
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	5 cut(s)	341, 445, 637, 715, 862
MalI	GATC	3 cut(s)	282, 580, 890
MboI	GATC	3 cut(s)	280, 578, 888
MboII	GAAGA	4 cut(s)	254, 418, 658, 940
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	698, 1121
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	3 cut(s)	74, 1038, 1107
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	969
MnlI	CCTC	9 cut(s)	198, 547, 550, 642, 672, 680, 888, 935, 1053
Mox20I	TGGCCA	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	3 cut(s)	59, 443, 467
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	5 cut(s)	87, 300, 456, 740, 854
MspR9I	CCNGG	3 cut(s)	505, 610, 656
MvaI	CCWGG	3 cut(s)	505, 610, 656
MwoI	GCNNNNNNNGC	8 cut(s)	173, 179, 188, 542, 605, 693, 788, 838
NaeI	GCCGGC	1 cut(s)	741
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	3 cut(s)	280, 578, 888
NgoMIV	GCCGGC	1 cut(s)	739
NheI	GCTAGC	1 cut(s)	1088
NlaIII	CATG	9 cut(s)	244, 340, 349, 373, 466, 730, 769, 907, 973
NlaIV	GGNNCC	4 cut(s)	460, 580, 653, 660
NmuCI	GTSAC	3 cut(s)	445, 637, 862
NspI	RCATGY	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	443
PagI	TCATGA	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	741
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	6 cut(s)	17, 20, 175, 745, 781, 784
PleI	GAGTC	1 cut(s)	969
PpsI	GAGTC	1 cut(s)	969
PshAI	GACNNNNGTC	1 cut(s)	365
Psp6I	CCWGG	3 cut(s)	503, 608, 654
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	3 cut(s)	503, 608, 654
PspN4I	GGNNCC	4 cut(s)	460, 580, 653, 660
PspPI	GGNCC	3 cut(s)	269, 750, 851
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	5 cut(s)	255, 479, 653, 1001, 1010
RsaNI	GTAC	5 cut(s)	254, 478, 652, 1000, 1009
RseI	CAYNNNNRTG	3 cut(s)	59, 443, 467
SaqAI	TTAA	1 cut(s)	1035
SatI	GCNGC	6 cut(s)	16, 19, 174, 744, 780, 783
Sau3AI	GATC	3 cut(s)	280, 578, 888
Sau96I	GGNCC	3 cut(s)	269, 750, 851
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	3 cut(s)	505, 610, 656
SduI	GDGCHC	2 cut(s)	698, 1121
SfaNI	GCATC	1 cut(s)	828
SfcI	CTRYAG	3 cut(s)	171, 441, 1071
SinI	GGWCC	2 cut(s)	750, 851
SmiMI	CAYNNNNRTG	3 cut(s)	59, 443, 467
SmlI	CTYRAG	3 cut(s)	200, 572, 1044
SmoI	CTYRAG	3 cut(s)	200, 572, 1044
Sse9I	AATT	3 cut(s)	74, 1038, 1107
SsiI	CCGC	4 cut(s)	15, 675, 713, 867
SspMI	CTAG	2 cut(s)	540, 1089
StyD4I	CCNGG	3 cut(s)	503, 608, 654
StyI	CCWWGG	1 cut(s)	1134
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	518, 806
TasI	AATT	3 cut(s)	74, 1038, 1107
TatI	WGTACW	4 cut(s)	253, 477, 999, 1008
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	5 cut(s)	175, 279, 456, 642, 1090
TseFI	GTSAC	3 cut(s)	445, 637, 862
TseI	GCWGC	5 cut(s)	18, 173, 743, 779, 782
Tsp45I	GTSAC	3 cut(s)	445, 637, 862
TspDTI	ATGAA	8 cut(s)	22, 107, 229, 257, 419, 782, 792, 904
TspRI	CASTG	5 cut(s)	175, 279, 456, 642, 1090
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	750, 851
XapI	RAATTY	2 cut(s)	1038, 1107
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	2 cut(s)	540, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.