Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Forward (+)

18132377 .. 18135244

Gene Structure 2868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGAAGCCAACTTGCTTCAGCAACTTCCTTGAGAATTCAAAACCCTACTTTGCAATGATCTCTTTGCAATTCGGCTACGCCGGAATGAACATCATCACCAAAGTTTCTCTGAACCGAGGAATGAGCCACTATGTGCTCGTGGTTTACCGCCACGCCTTCGCCACCGCCATTATAGCCCCCTTTGCATTCTTTTTTGAGAGGAAAGCACAACCAAAGATAACATTCCCAGTTTTCATGCAAATATTCATCCTCGCTCTTCTTGGGCCGGTGATCGACCAAAACTTTTACTATGCGGGGTTGAAGTTTACGTCTCCAACATTCTCTTGTGCCATGAGCAACATGCTCCCAGCCATGACGTTTGTCATGGCTGTCATATGCCGGATGGAAAAGCTAGACATGAAGACAGTGAGATGCCAAGCAAAGGTCGCAGGAACCGTAGTGACAGTGGCTGGGGCCATGTTAATGACCTTGTACAAAGGCCCCATTGTTGAGATGTTGTGGTCTAAATACATTCATCCCAAATCATCCTATGTCACCGATACCACAGGAACCGGCGACAAACACTGGTTCTTAGGCTCCGTACTCCTCACCATCGCCACTCTTGCCTGGGCTTCTTTGTTTGTATTGCAAAACAAAGCTTTGAAGACGTACAAGGATCATCAGCTGTCTCTGACATCGCTAGTGTGTTTCATCGGAACTCTCCAGGCCATTGCTGTCACCTTTGTGATGGAGCACAAACCCTCTGTCTGGAAAATCGGGTTCGACATGAACCTCCTTGCTGCTGCCTATGCTGTATGTAAATCGACCGATCAATCTCTCTCCATTACTCTCTCACACGGTCTCTCTCAATTAGTGACATTTTTGAATTTTTTTTATATGCAGGGGATTGTGACATCAAGCATTTCATACTATGTACAAGGGATAGTGATGAAGAAAAAAGGTCCCGTATTTGCAACCGCTTTTAGCCCTCTGATGATGATCATTGTGGCTATCATGGGCTCCTTCATCTTGGCCGAAAAAATATTTCTTGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

346

Amino Acids

38.56

Weight (kDa)

9.53

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 157	4.2e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	151, 168, 296, 960
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	2 cut(s)	37, 868
AcuI	CTGAAG	1 cut(s)	4
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	4 cut(s)	476, 585, 653, 918
AfiI	CCNNNNNNNGG	2 cut(s)	424, 750
AgsI	TTSAA	4 cut(s)	42, 304, 646, 868
AjnI	CCWGG	2 cut(s)	608, 705
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	3 cut(s)	394, 641, 667
AluI	AGCT	3 cut(s)	394, 641, 667
Alw21I	GWGCWC	2 cut(s)	141, 738
Alw26I	GTCTC	3 cut(s)	318, 675, 848
AlwI	GGATC	1 cut(s)	666
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	5 cut(s)	266, 456, 481, 708, 1014
ApeKI	GCWGC	2 cut(s)	782, 785
ApoI	RAATTY	2 cut(s)	37, 868
ArsI	GACNNNNNNTTYG	2 cut(s)	732, 764
AspS9I	GGNCC	4 cut(s)	266, 456, 482, 944
AsuHPI	GGTGA	5 cut(s)	91, 283, 529, 583, 712
AvaII	GGWCC	1 cut(s)	944
BanII	GRGCYC	1 cut(s)	1004
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	410, 653
Bbv12I	GWGCWC	2 cut(s)	141, 738
BbvI	GCAGC	2 cut(s)	769, 772
BccI	CCATC	3 cut(s)	379, 602, 724
BciT130I	CCWGG	2 cut(s)	610, 707
BclI	TGATCA	1 cut(s)	981
BcoDI	GTCTC	3 cut(s)	318, 675, 848
BfaI	CTAG	2 cut(s)	395, 683
BisI	GCNGC	2 cut(s)	783, 786
BlsI	GCNGC	2 cut(s)	784, 787
Bme1390I	CCNGG	2 cut(s)	610, 707
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	4 cut(s)	266, 456, 482, 944
BmiI	GGNNCC	7 cut(s)	436, 457, 484, 553, 580, 946, 1003
BmrFI	CCNGG	2 cut(s)	610, 707
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	224
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	410, 653
BpmI	CTGGAG	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	980
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	2 cut(s)	118, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 750
Bse118I	RCCGGY	2 cut(s)	268, 554
Bse1I	ACTGG	2 cut(s)	230, 572
Bse3DI	GCAATG	2 cut(s)	63, 711
Bse8I	GATNNNNATC	1 cut(s)	980
BseBI	CCWGG	2 cut(s)	610, 707
BseDI	CCNNGG	2 cut(s)	118, 609
BseGI	GGATG	4 cut(s)	249, 390, 517, 527
BseJI	GATNNNNATC	1 cut(s)	980
BseLI	CCNNNNNNNGG	2 cut(s)	424, 750
BseMI	GCAATG	2 cut(s)	63, 711
BseNI	ACTGG	2 cut(s)	230, 572
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	769, 772
BseYI	CCCAGC	2 cut(s)	349, 452
Bsh1285I	CGRYCG	1 cut(s)	810
BshFI	GGCC	5 cut(s)	268, 458, 483, 710, 1016
BsiEI	CGRYCG	1 cut(s)	810
BsiHKAI	GWGCWC	2 cut(s)	141, 738
BsiSI	CCGG	4 cut(s)	84, 269, 382, 555
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	2 cut(s)	424, 750
BsmAI	GTCTC	3 cut(s)	318, 675, 848
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	930
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	5 cut(s)	268, 458, 483, 710, 1016
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	3 cut(s)	141, 738, 1004
Bsp1407I	TGTACA	2 cut(s)	474, 916
Bsp143I	GATC	5 cut(s)	60, 273, 658, 811, 981
BspACI	CCGC	4 cut(s)	151, 168, 296, 960
BspANI	GGCC	5 cut(s)	268, 458, 483, 710, 1016
BspLI	GGNNCC	7 cut(s)	436, 457, 484, 553, 580, 946, 1003
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	63, 711
BsrFI	RCCGGY	2 cut(s)	268, 554
BsrGI	TGTACA	2 cut(s)	474, 916
BsrI	ACTGG	2 cut(s)	230, 572
BssAI	RCCGGY	2 cut(s)	268, 554
BssECI	CCNNGG	2 cut(s)	118, 609
BssMI	GATC	5 cut(s)	60, 273, 658, 811, 981
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	610, 707
Bst4CI	ACNGT	4 cut(s)	409, 439, 448, 842
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	2 cut(s)	474, 916
BstDEI	CTNAG	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	249, 390, 517, 527
BstKTI	GATC	5 cut(s)	63, 276, 661, 814, 984
BstMAI	GTCTC	3 cut(s)	318, 675, 848
BstMBI	GATC	5 cut(s)	60, 273, 658, 811, 981
BstMCI	CGRYCG	1 cut(s)	810
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
BstNI	CCWGG	2 cut(s)	610, 707
BstNSI	RCATGY	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	608, 705
BstV1I	GCAGC	2 cut(s)	769, 772
BstV2I	GAAGAC	2 cut(s)	410, 653
BsuRI	GGCC	5 cut(s)	268, 458, 483, 710, 1016
BtgZI	GCGATG	2 cut(s)	580, 663
BtsCI	GGATG	4 cut(s)	249, 390, 517, 527
BtsIMutI	CAGTG	3 cut(s)	414, 453, 565
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr10I	RCCGGY	2 cut(s)	268, 554
Cfr13I	GGNCC	4 cut(s)	266, 456, 482, 944
Csp6I	GTAC	4 cut(s)	475, 584, 652, 917
CviAII	CATG	9 cut(s)	238, 334, 343, 355, 367, 400, 460, 769, 997
CviQI	GTAC	4 cut(s)	475, 584, 652, 917
DdeI	CTNAG	1 cut(s)	574
DpnI	GATC	5 cut(s)	62, 275, 660, 813, 983
DpnII	GATC	5 cut(s)	60, 273, 658, 811, 981
DraIII	CACNNNGTG	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	1004
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	4
EcoO109I	RGGNCCY	2 cut(s)	482, 944
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	608, 705
EcoT38I	GRGCYC	1 cut(s)	1004
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	9 cut(s)	241, 337, 346, 358, 370, 403, 463, 772, 1000
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	9 cut(s)	237, 333, 342, 354, 366, 399, 459, 768, 996
FauI	CCCGC	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	2 cut(s)	783, 786
FokI	GGATG	4 cut(s)	236, 397, 504, 514
FriOI	GRGCYC	1 cut(s)	1004
Fsp4HI	GCNGC	2 cut(s)	783, 786
FspBI	CTAG	2 cut(s)	395, 683
GluI	GCNGC	2 cut(s)	783, 786
GsaI	CCCAGC	2 cut(s)	353, 456
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	5 cut(s)	268, 458, 483, 710, 1016
HapII	CCGG	4 cut(s)	84, 269, 382, 555
Hin1II	CATG	9 cut(s)	241, 337, 346, 358, 370, 403, 463, 772, 1000
HindIII	AAGCTT	1 cut(s)	639
HpaII	CCGG	4 cut(s)	84, 269, 382, 555
HphI	GGTGA	5 cut(s)	91, 283, 529, 583, 712
Hpy166II	GTNNAC	2 cut(s)	148, 309
Hpy188I	TCNGA	4 cut(s)	114, 675, 698, 975
Hpy188III	TCNNGA	1 cut(s)	751
Hpy8I	GTNNAC	2 cut(s)	148, 309
HpyAV	CCTTC	3 cut(s)	169, 1015, 1029
HpyCH4III	ACNGT	4 cut(s)	409, 439, 448, 842
HpyCH4IV	ACGT	3 cut(s)	311, 359, 650
HpyCH4V	TGCA	7 cut(s)	56, 70, 188, 241, 631, 883, 956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
HpyF3I	CTNAG	1 cut(s)	574
HpySE526I	ACGT	3 cut(s)	311, 359, 650
Hsp92II	CATG	9 cut(s)	241, 337, 346, 358, 370, 403, 463, 772, 1000
Ksp22I	TGATCA	1 cut(s)	981
Kzo9I	GATC	5 cut(s)	60, 273, 658, 811, 981
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	351, 584, 733, 1007
Lsp1109I	GCAGC	2 cut(s)	769, 772
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	395, 683
MaeII	ACGT	3 cut(s)	311, 359, 650
MaeIII	GTNAC	5 cut(s)	442, 535, 718, 856, 892
MalI	GATC	5 cut(s)	62, 275, 660, 813, 983
MboI	GATC	5 cut(s)	60, 273, 658, 811, 981
MboII	GAAGA	4 cut(s)	251, 415, 658, 946
MhlI	GDGCHC	3 cut(s)	141, 738, 1004
MluCI	AATT	4 cut(s)	37, 71, 851, 868
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	7 cut(s)	113, 195, 263, 599, 754, 785, 981
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	2 cut(s)	464, 725
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	4 cut(s)	84, 269, 382, 555
MspR9I	CCNGG	2 cut(s)	610, 707
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	2 cut(s)	610, 707
MwoI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	5 cut(s)	60, 273, 658, 811, 981
NlaIII	CATG	9 cut(s)	241, 337, 346, 358, 370, 403, 463, 772, 1000
NlaIV	GGNNCC	7 cut(s)	436, 457, 484, 553, 580, 946, 1003
NmuCI	GTSAC	5 cut(s)	442, 535, 718, 856, 892
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	784, 787
PpuMI	RGGWCCY	1 cut(s)	944
PshAI	GACNNNNGTC	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	608, 705
PspFI	CCCAGC	2 cut(s)	349, 452
PspGI	CCWGG	2 cut(s)	608, 705
PspN4I	GGNNCC	7 cut(s)	436, 457, 484, 553, 580, 946, 1003
PspPI	GGNCC	4 cut(s)	266, 456, 482, 944
PspPPI	RGGWCCY	1 cut(s)	944
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	4 cut(s)	476, 585, 653, 918
RsaNI	GTAC	4 cut(s)	475, 584, 652, 917
RseI	CAYNNNNRTG	2 cut(s)	464, 725
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	2 cut(s)	783, 786
Sau3AI	GATC	5 cut(s)	60, 273, 658, 811, 981
Sau96I	GGNCC	4 cut(s)	266, 456, 482, 944
ScrFI	CCNGG	2 cut(s)	610, 707
SduI	GDGCHC	3 cut(s)	141, 738, 1004
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	2 cut(s)	464, 725
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	37, 71, 851, 868
SsiI	CCGC	4 cut(s)	151, 168, 296, 960
SspI	AATATT	2 cut(s)	246, 1026
SspMI	CTAG	2 cut(s)	395, 683
StyD4I	CCNGG	2 cut(s)	608, 705
TaaI	ACNGT	4 cut(s)	409, 439, 448, 842
TaiI	ACGT	3 cut(s)	314, 362, 653
TaqI	TCGA	3 cut(s)	276, 765, 806
TaqII	GACCGA	1 cut(s)	824
TasI	AATT	4 cut(s)	37, 71, 851, 868
TatI	WGTACW	2 cut(s)	474, 916
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	3 cut(s)	414, 453, 572
TseFI	GTSAC	5 cut(s)	442, 535, 718, 856, 892
TseI	GCWGC	2 cut(s)	782, 785
Tsp45I	GTSAC	5 cut(s)	442, 535, 718, 856, 892
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	3 cut(s)	414, 453, 572
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	37, 868
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	395, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.