Rorug03G0268300

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
26327974 .. 26328588
615 bp
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UTR
Exon/CDS
Intron
Rorug03G0268300.1

Sequence Viewer

Length: 252 bp
ATGTCGATTCAGCGAAAGGGTGCAGGTATTGAAAACTTCGGATATGCTATTGCAGACCTTGTCCATTTACATTATGTTGATATTTTAGATGTTTGTGAACCTAAAGTTCAATTCTCAAAAGCTTGCAATGCTCTTAAAAACCTTGGTTTCACTGATTCAAGGATTGTTGAGGTTGAAGGCTTCTCTAGTGGTGTTTGGTCCTTGTGGAATAAAAATAAGGTTCAAGTTGACTTCATTGATGATAACTTCTAG

Protein Analysis

83

Amino Acids

9.35

Weight (kDa)

5.13

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AgsI TTSAA 5 cut(s) 32, 110, 159, 176, 224
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BfaI CTAG 2 cut(s) 186, 250
BfuAI ACCTGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 198
CviJI RGCY 2 cut(s) 122, 180
CviKI_1 RGCY 2 cut(s) 122, 180
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaiI YATR 2 cut(s) 45, 75
FspBI CTAG 2 cut(s) 186, 250
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 2 cut(s) 7, 155
Hpy166II GTNNAC 2 cut(s) 98, 229
Hpy188I TCNGA 1 cut(s) 41
Hpy8I GTNNAC 2 cut(s) 98, 229
HpyAV CCTTC 1 cut(s) 170
HpyCH4V TGCA 3 cut(s) 23, 53, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
LpnPI CCDG 1 cut(s) 9
MaeI CTAG 2 cut(s) 186, 250
MluCI AATT 1 cut(s) 110
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 7, 155
PflFI GACNNNGTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 198
PsyI GACNNNGTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 198
SetI ASST 7 cut(s) 28, 60, 103, 124, 144, 174, 222
SgeI CNNG 8 cut(s) 36, 71, 135, 155, 171, 198, 214, 236
SinI GGWCC 1 cut(s) 198
Sse9I AATT 1 cut(s) 110
SspMI CTAG 2 cut(s) 186, 250
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 110
TfiI GAWTC 2 cut(s) 7, 155
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 198
XspI CTAG 2 cut(s) 186, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.