Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000198.1

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Reverse (-)

54910 .. 56606

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000198.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggagggaaatggcgggtgttgtcgaagtttcattcagagttcaaagccatacatagctatgatttctctgcaattcggctatgcgggaatgaacatcatcactaaggtttcgctcaaccgtggaatgagccactatgtgcttgttgtttacaggcacgcctttgccactgcagctattgcaccatttgctcttgttcttgagagaaaaataagaccaaagattacattccccattttcatgcaactttttgtactgggtcttcttgggccggtcattgatcaaaacttctactatgccggattgaagtttacatccccgaccttctcttgtgccatgagtaacatgcttccggcaatgacattcgtcatggctgtcctttgcaggatggagaagctggacatgaagaaggttagatgccaagcgaagctgataggaacaattgtgacagtggccggagccatgttgatgacgttgtacaaaggaaacatcattaactttccatggtcgggtcacttggcaaactccaataatgcccctagtgcaaataataatgaggacaaggactggctcaagggatccattctgctcatcttggccacccttgcctgggcttctttcttcatcattcaggcagtgacacagaagaggtaccaagctccgttatccctcacagcaatcgtctgcttcttgggaacactgcagtccatagctgttacctttgtcatggaacacaagccggcggcttggaccattggttgggacatgaaccttcttgctgctgcatatgctggcatagtttcatcgagccttgcatactacgttcaagggctggtgatggagaaaacaggtcctgtttttgtcaccgctttcagccctcttatgatgattattgtggctgtcatgggttctttcatccttgctgagaagatctatcttggaggtattcttggtgctgtactaattgtcatgggactctactcggttctctggggtaagtataaagagtacaaagaaaaagaagctgagagctttaatattcctcaagcaataaagggttctacagctactactggagacatcactactgatttacaagacattgaaatacaaaagagcagccaacctaaccccaaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

380

Amino Acids

41.7

Weight (kDa)

9.21

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	4 cut(s)	15, 86, 743, 867
AclWI	GGATC	2 cut(s)	573, 586
AcoI	YGGCCR	2 cut(s)	453, 597
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	5 cut(s)	255, 479, 653, 960, 1010
AfiI	CCNNNNNNNGG	4 cut(s)	509, 609, 610, 759
AgsI	TTSAA	4 cut(s)	45, 307, 827, 1106
AjnI	CCWGG	1 cut(s)	608
AluBI	AGCT	9 cut(s)	59, 176, 397, 430, 659, 713, 1025, 1032, 1067
AluI	AGCT	9 cut(s)	59, 176, 397, 430, 659, 713, 1025, 1032, 1067
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	2 cut(s)	573, 586
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	3 cut(s)	269, 453, 597
ApeKI	GCWGC	4 cut(s)	173, 779, 782, 1119
Asp718I	GGTACC	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	269, 750, 851
AsuHPI	GGTGA	2 cut(s)	847, 856
AvaII	GGWCC	2 cut(s)	750, 851
BalI	TGGCCA	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	651
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	4 cut(s)	185, 766, 769, 1131
BccI	CCATC	2 cut(s)	382, 832
BciT130I	CCWGG	1 cut(s)	610
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	3 cut(s)	171, 701, 1062
BglII	AGATCT	1 cut(s)	930
BisI	GCNGC	5 cut(s)	174, 744, 780, 783, 1120
BlsI	GCNGC	5 cut(s)	175, 745, 781, 784, 1121
Bme1390I	CCNGG	1 cut(s)	610
Bme18I	GGWCC	2 cut(s)	750, 851
BmgT120I	GGNCC	3 cut(s)	269, 750, 851
BmiI	GGNNCC	3 cut(s)	460, 580, 653
BmrFI	CCNGG	1 cut(s)	610
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	1095
BpuEI	CTTGAG	3 cut(s)	221, 557, 1029
BsaJI	CCNNGG	4 cut(s)	121, 503, 609, 1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 609, 610, 759
Bse118I	RCCGGY	2 cut(s)	271, 739
Bse1I	ACTGG	3 cut(s)	261, 572, 1078
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	610
BseDI	CCNNGG	4 cut(s)	121, 503, 609, 1134
BseGI	GGATG	3 cut(s)	314, 393, 915
BseLI	CCNNNNNNNGG	4 cut(s)	509, 609, 610, 759
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	915, 1017
BseNI	ACTGG	3 cut(s)	261, 572, 1078
BseXI	GCAGC	4 cut(s)	185, 766, 769, 1131
BshFI	GGCC	3 cut(s)	271, 455, 599
BshNI	GGYRCC	1 cut(s)	651
BsiSI	CCGG	5 cut(s)	272, 300, 353, 456, 740
BslFI	GGGAC	2 cut(s)	776, 987
BslI	CCNNNNNNNGG	4 cut(s)	509, 609, 610, 759
BsmAI	GTCTC	1 cut(s)	1071
BsmFI	GGGAC	2 cut(s)	776, 987
BsnI	GGCC	3 cut(s)	271, 455, 599
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	280, 578, 930
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	4 cut(s)	15, 86, 743, 867
BspANI	GGCC	3 cut(s)	271, 455, 599
BspCNI	CTCAG	2 cut(s)	916, 1018
BspLI	GGNNCC	3 cut(s)	460, 580, 653
BspMAI	CTGCAG	2 cut(s)	175, 705
BspPI	GGATC	2 cut(s)	573, 586
BspT107I	GGYRCC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	2 cut(s)	271, 739
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	261, 572, 1078
BssAI	RCCGGY	2 cut(s)	271, 739
BssECI	CCNNGG	4 cut(s)	121, 503, 609, 1134
BssMI	GATC	3 cut(s)	280, 578, 930
BssT1I	CCWWGG	2 cut(s)	503, 1134
Bst2UI	CCWGG	1 cut(s)	610
Bst4CI	ACNGT	2 cut(s)	122, 451
Bst6I	CTCTTC	1 cut(s)	641
BstAPI	GCANNNNNTGC	2 cut(s)	179, 188
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	159, 741, 793
BstDEI	CTNAG	3 cut(s)	105, 924, 1026
BstDSI	CCRYGG	2 cut(s)	121, 503
BstF5I	GGATG	3 cut(s)	314, 393, 915
BstKTI	GATC	3 cut(s)	283, 581, 933
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	3 cut(s)	280, 578, 930
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 179, 188, 542, 605, 788
BstNI	CCWGG	1 cut(s)	610
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	608
BstSFI	CTRYAG	3 cut(s)	171, 701, 1062
BstV1I	GCAGC	4 cut(s)	185, 766, 769, 1131
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	578, 930
BstYI	RGATCY	2 cut(s)	578, 930
BsuRI	GGCC	3 cut(s)	271, 455, 599
BtgI	CCRYGG	2 cut(s)	121, 503
BtsCI	GGATG	3 cut(s)	314, 393, 915
BtsI	GCAGTG	3 cut(s)	168, 642, 698
BtsIMutI	CAGTG	4 cut(s)	168, 456, 642, 698
Cac8I	GCNNGC	3 cut(s)	159, 741, 793
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr10I	RCCGGY	2 cut(s)	271, 739
Cfr13I	GGNCC	3 cut(s)	269, 750, 851
Csp6I	GTAC	5 cut(s)	254, 478, 652, 959, 1009
CviQI	GTAC	5 cut(s)	254, 478, 652, 959, 1009
DdeI	CTNAG	3 cut(s)	105, 924, 1026
DpnI	GATC	3 cut(s)	282, 580, 932
DpnII	GATC	3 cut(s)	280, 578, 930
DraIII	CACNNNGTG	1 cut(s)	139
EaeI	YGGCCR	2 cut(s)	453, 597
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	2 cut(s)	503, 1134
Eco47I	GGWCC	2 cut(s)	750, 851
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	608
EcoT14I	CCWWGG	2 cut(s)	503, 1134
ErhI	CCWWGG	2 cut(s)	503, 1134
FaqI	GGGAC	2 cut(s)	776, 987
FauI	CCCGC	2 cut(s)	8, 79
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	5 cut(s)	174, 744, 780, 783, 1120
FokI	GGATG	3 cut(s)	301, 400, 902
Fsp4HI	GCNGC	5 cut(s)	174, 744, 780, 783, 1120
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	5 cut(s)	174, 744, 780, 783, 1120
GsuI	CTGGAG	1 cut(s)	1095
HaeIII	GGCC	3 cut(s)	271, 455, 599
HapII	CCGG	5 cut(s)	272, 300, 353, 456, 740
HinfI	GANTC	1 cut(s)	975
HpaII	CCGG	5 cut(s)	272, 300, 353, 456, 740
HphI	GGTGA	2 cut(s)	847, 856
Hpy166II	GTNNAC	2 cut(s)	151, 312
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	151, 312
HpyAV	CCTTC	3 cut(s)	334, 403, 782
HpyCH4III	ACNGT	2 cut(s)	122, 451
HpyCH4IV	ACGT	2 cut(s)	473, 822
HpyCH4V	TGCA	9 cut(s)	73, 173, 182, 244, 384, 545, 703, 785, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 179, 188, 542, 605, 788
HpyF3I	CTNAG	3 cut(s)	105, 924, 1026
HpySE526I	ACGT	2 cut(s)	473, 822
KpnI	GGTACC	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	280, 578, 930
LmnI	GCTCC	2 cut(s)	458, 664
Lsp1109I	GCAGC	4 cut(s)	185, 766, 769, 1131
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	473, 822
MaeIII	GTNAC	6 cut(s)	341, 445, 512, 637, 715, 862
MalI	GATC	3 cut(s)	282, 580, 932
MboI	GATC	3 cut(s)	280, 578, 930
MboII	GAAGA	5 cut(s)	254, 418, 613, 658, 940
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	2 cut(s)	578, 930
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	3 cut(s)	74, 441, 963
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	969
MnlI	CCTC	6 cut(s)	550, 642, 680, 888, 935, 1053
Mox20I	TGGCCA	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	2 cut(s)	495, 1035
MslI	CAYNNNNRTG	3 cut(s)	59, 239, 467
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	5 cut(s)	272, 300, 353, 456, 740
MspR9I	CCNGG	1 cut(s)	610
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	610
MwoI	GCNNNNNNNGC	6 cut(s)	173, 179, 188, 542, 605, 788
NaeI	GCCGGC	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	3 cut(s)	280, 578, 930
NgoMIV	GCCGGC	1 cut(s)	739
NlaIV	GGNNCC	3 cut(s)	460, 580, 653
NmuCI	GTSAC	4 cut(s)	445, 512, 637, 862
NspI	RCATGY	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	741
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	5 cut(s)	175, 745, 781, 784, 1121
PleI	GAGTC	1 cut(s)	969
PpsI	GAGTC	1 cut(s)	969
PpuMI	RGGWCCY	1 cut(s)	851
PshAI	GACNNNNGTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	3 cut(s)	460, 580, 653
PspPI	GGNCC	3 cut(s)	269, 750, 851
PspPPI	RGGWCCY	1 cut(s)	851
PstI	CTGCAG	2 cut(s)	175, 705
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	578, 930
RsaI	GTAC	5 cut(s)	255, 479, 653, 960, 1010
RsaNI	GTAC	5 cut(s)	254, 478, 652, 959, 1009
RseI	CAYNNNNRTG	3 cut(s)	59, 239, 467
SaqAI	TTAA	2 cut(s)	495, 1035
SatI	GCNGC	5 cut(s)	174, 744, 780, 783, 1120
Sau3AI	GATC	3 cut(s)	280, 578, 930
Sau96I	GGNCC	3 cut(s)	269, 750, 851
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	3 cut(s)	171, 701, 1062
SinI	GGWCC	2 cut(s)	750, 851
SmiMI	CAYNNNNRTG	3 cut(s)	59, 239, 467
SmlI	CTYRAG	3 cut(s)	200, 572, 1044
SmoI	CTYRAG	3 cut(s)	200, 572, 1044
Sse9I	AATT	3 cut(s)	74, 441, 963
SsiI	CCGC	4 cut(s)	15, 86, 743, 867
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	608
StyI	CCWWGG	2 cut(s)	503, 1134
TaaI	ACNGT	2 cut(s)	122, 451
TaiI	ACGT	2 cut(s)	476, 825
TaqI	TCGA	2 cut(s)	25, 806
TasI	AATT	3 cut(s)	74, 441, 963
TatI	WGTACW	4 cut(s)	253, 477, 958, 1008
TauI	GCSGC	1 cut(s)	746
Tru1I	TTAA	2 cut(s)	495, 1035
Tru9I	TTAA	2 cut(s)	495, 1035
TscAI	CASTG	4 cut(s)	175, 456, 642, 705
TseFI	GTSAC	4 cut(s)	445, 512, 637, 862
TseI	GCWGC	4 cut(s)	173, 779, 782, 1119
Tsp45I	GTSAC	4 cut(s)	445, 512, 637, 862
TspDTI	ATGAA	8 cut(s)	22, 107, 229, 419, 613, 782, 792, 904
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	4 cut(s)	175, 456, 642, 705
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	750, 851
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.