Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Reverse (-)

21622757 .. 21624684

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGAAGGCTGGTTGCTTCGGCAGCTTTCTTGAGAGCTCAAAACCCTACTTTGCTATGATCTCTCTACAATTTGGCTACGCCGGTATGAACATCATTACCAAAGTTTCTCTCAACAGAGGAATGAGTCACTATGTGCTTGTGGTTTATCGACATGCCTTTGCTACTGCTATTATAGCCCCATTTGCCTTCTTTTTTGAGAGGAAGAAGCAACCAAAAATGACATTCTCAATGTTCATTCAAATATTTATCCTCGGTCTTCTCGGTCCGGTGATTGACCAGAACTTCTACTATGCCGGGTTGAAGTTTACGTCTCCAACGTTCTCTTGTGCCATGAGCAACATGCTTCCGGCTATGACTTTTGTCCTGGCCGTCATATTCCGGATGGAAGTGCTAGACATCAAGAAAGTAAGGTGTCAAGCAAAGGTTCTCGGAACCGTATTGACAGTTGCGGGGGCCATGCTGATGACCTTGTACAGGGGGCCTATTGTAGAGATGTTGTGGTCTAAGTATATTCATCCACGAACATCATATATCACAGATACCACTGGAACTGGTGACAAACACTGGCTTTTGGGATCCATTATGCTAACCATTGCTACTCTTGCCTGGGCTTCTTTGTTTGTGTTGCAAAACAACGCGTTGAAGACCTACAAGAACCATCAGCTGTCTCTCACTTCAATGATATGCGGCATAGGAACTCTTCAGGCTATTGCTGTTACCCTTGTGATGGAACACGAACCCTCCGTCTGGAAAATTGGGTTTGACATGAACCTCCTAGCTGCTGCCTATGCTGGAATTGTCACATCAAGCATTTCATACTATGTACAAGGGCTAGTGATGAAGACAAGAGGTCCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATCATTGTAGCAATCATGGGTTCCTTCATCCTGGCAGAAAAAATATTTCTTGGAAGTGTACTAGGAGCCGTGTTGATCATGTTCGGGCTTTATGCAGTCCTGTGGGGTAAACACAAAGAAGGACTGGAGAAGAAAGAGGAGGAGATCCCGGAAGCAATAAAGGGTTCTCAAGTTAACCGCGTGTCGATGTCCACCATTAACGGAGATGTTGGAGCTCACAACAAGCTCTCCTCCGTTGCTATTTCAATGCCTATCACGGAGCCCCCCATGAAAGCCAACCCAAAGCCAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

396

Amino Acids

43.48

Weight (kDa)

9.48

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 157	6.9e-14	EamA-like transporter family
EamA	PF00892	192 - 331	1.8e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	641, 1071
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	3 cut(s)	452, 690, 1069
AclI	AACGTT	1 cut(s)	320
AclWI	GGATC	3 cut(s)	573, 586, 1030
AcoI	YGGCCR	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	689
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	3 cut(s)	476, 828, 951
AfiI	CCNNNNNNNGG	3 cut(s)	477, 730, 750
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	242, 304, 646, 681, 1137
AhdI	GACNNNNNGTC	1 cut(s)	852
AjnI	CCWGG	3 cut(s)	366, 608, 921
AluBI	AGCT	6 cut(s)	27, 39, 667, 782, 1106, 1117
AluI	AGCT	6 cut(s)	27, 39, 667, 782, 1106, 1117
Alw21I	GWGCWC	2 cut(s)	41, 1108
Alw26I	GTCTC	2 cut(s)	318, 675
AlwI	GGATC	3 cut(s)	573, 586, 1030
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	3 cut(s)	369, 456, 482
ApeKI	GCWGC	3 cut(s)	24, 782, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	732, 764
AspS9I	GGNCC	4 cut(s)	266, 456, 482, 854
AsuC2I	CCSGG	2 cut(s)	298, 1040
AsuHPI	GGTGA	2 cut(s)	283, 569
AvaII	GGWCC	2 cut(s)	266, 854
BamHI	GGATCC	1 cut(s)	578
BanII	GRGCYC	3 cut(s)	41, 1108, 1155
BbsI	GAAGAC	3 cut(s)	251, 653, 851
Bbv12I	GWGCWC	2 cut(s)	41, 1108
BbvI	GCAGC	3 cut(s)	36, 769, 772
BccI	CCATC	3 cut(s)	379, 669, 724
BceAI	ACGGC	2 cut(s)	356, 944
BciT130I	CCWGG	3 cut(s)	368, 610, 923
BclI	TGATCA	2 cut(s)	891, 966
BcnI	CCSGG	2 cut(s)	298, 1040
BcoDI	GTCTC	2 cut(s)	318, 675
BfaI	CTAG	4 cut(s)	395, 779, 836, 953
BisI	GCNGC	4 cut(s)	25, 691, 783, 786
BlsI	GCNGC	4 cut(s)	26, 692, 784, 787
Bme1390I	CCNGG	5 cut(s)	298, 368, 610, 923, 1040
Bme18I	GGWCC	2 cut(s)	266, 854
BmeRI	GACNNNNNGTC	1 cut(s)	852
BmgT120I	GGNCC	4 cut(s)	266, 456, 482, 854
BmiI	GGNNCC	7 cut(s)	436, 457, 483, 580, 913, 958, 1152
BmrFI	CCNGG	5 cut(s)	298, 368, 610, 923, 1040
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	3 cut(s)	251, 653, 851
BpmI	CTGGAG	1 cut(s)	1037
BpuEI	CTTGAG	2 cut(s)	53, 1044
BpuMI	CCSGG	2 cut(s)	298, 1040
BsaBI	GATNNNNATC	1 cut(s)	890
BsaJI	CCNNGG	2 cut(s)	253, 609
BsaWI	WCCGGW	2 cut(s)	268, 381
BsaXI	ACNNNNNCTCC	4 cut(s)	728, 758, 1103, 1133
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 730, 750
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	553, 559, 572, 1020
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	890
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	3 cut(s)	368, 610, 923
BseDI	CCNNGG	2 cut(s)	253, 609
BseGI	GGATG	3 cut(s)	390, 517, 918
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	3 cut(s)	477, 730, 750
BseMI	GCAATG	1 cut(s)	594
BseNI	ACTGG	4 cut(s)	553, 559, 572, 1020
BseRI	GAGGAG	3 cut(s)	1043, 1046, 1111
BseXI	GCAGC	3 cut(s)	36, 769, 772
Bsh1236I	CGCG	2 cut(s)	641, 1071
BshFI	GGCC	3 cut(s)	371, 458, 484
BsiHKAI	GWGCWC	2 cut(s)	41, 1108
BsiSI	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1040
BslI	CCNNNNNNNGG	3 cut(s)	477, 730, 750
BsmAI	GTCTC	2 cut(s)	318, 675
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	371, 458, 484
Bsp1286I	GDGCHC	3 cut(s)	41, 1108, 1155
Bsp13I	TCCGGA	1 cut(s)	381
Bsp1407I	TGTACA	2 cut(s)	474, 826
Bsp143I	GATC	5 cut(s)	60, 578, 891, 966, 1035
BspACI	CCGC	3 cut(s)	452, 690, 1069
BspANI	GGCC	3 cut(s)	371, 458, 484
BspEI	TCCGGA	1 cut(s)	381
BspFNI	CGCG	2 cut(s)	641, 1071
BspLI	GGNNCC	7 cut(s)	436, 457, 483, 580, 913, 958, 1152
BspPI	GGATC	3 cut(s)	573, 586, 1030
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	2 cut(s)	474, 826
BsrI	ACTGG	4 cut(s)	553, 559, 572, 1020
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	253, 609
BssMI	GATC	5 cut(s)	60, 578, 891, 966, 1035
Bst2UI	CCWGG	3 cut(s)	368, 610, 923
Bst4CI	ACNGT	2 cut(s)	439, 448
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	2 cut(s)	474, 826
BstDEI	CTNAG	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	3 cut(s)	390, 517, 918
BstFNI	CGCG	2 cut(s)	641, 1071
BstKTI	GATC	5 cut(s)	63, 581, 894, 969, 1038
BstMAI	GTCTC	2 cut(s)	318, 675
BstMBI	GATC	5 cut(s)	60, 578, 891, 966, 1035
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
BstNI	CCWGG	3 cut(s)	368, 610, 923
BstNSI	RCATGY	2 cut(s)	158, 346
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	5 cut(s)	296, 366, 608, 921, 1038
BstUI	CGCG	2 cut(s)	641, 1071
BstV1I	GCAGC	3 cut(s)	36, 769, 772
BstV2I	GAAGAC	3 cut(s)	251, 653, 851
BstX2I	RGATCY	2 cut(s)	578, 1035
BstYI	RGATCY	2 cut(s)	578, 1035
BsuRI	GGCC	3 cut(s)	371, 458, 484
BtsCI	GGATG	3 cut(s)	390, 517, 918
BtsIMutI	CAGTG	2 cut(s)	546, 565
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	4 cut(s)	266, 456, 482, 854
CpoI	CGGWCCG	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	475, 827, 950
CspI	CGGWCCG	1 cut(s)	266
CviAII	CATG	8 cut(s)	155, 334, 343, 460, 769, 907, 970, 1159
CviQI	GTAC	3 cut(s)	475, 827, 950
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	5 cut(s)	62, 580, 893, 968, 1037
DpnII	GATC	5 cut(s)	60, 578, 891, 966, 1035
DraIII	CACNNNGTG	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	708
Eam1105I	GACNNNNNGTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	2 cut(s)	39, 1106
Eco24I	GRGCYC	3 cut(s)	41, 1108, 1155
Eco47I	GGWCC	2 cut(s)	266, 854
Eco53kI	GAGCTC	2 cut(s)	39, 1106
Eco57I	CTGAAG	1 cut(s)	689
EcoICRI	GAGCTC	2 cut(s)	39, 1106
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoO109I	RGGNCCY	2 cut(s)	482, 854
EcoRII	CCWGG	3 cut(s)	366, 608, 921
EcoT38I	GRGCYC	3 cut(s)	41, 1108, 1155
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	8 cut(s)	158, 337, 346, 463, 772, 910, 973, 1162
FatI	CATG	8 cut(s)	154, 333, 342, 459, 768, 906, 969, 1158
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	891, 966
Fnu4HI	GCNGC	4 cut(s)	25, 691, 783, 786
FokI	GGATG	3 cut(s)	397, 504, 905
FriOI	GRGCYC	3 cut(s)	41, 1108, 1155
Fsp4HI	GCNGC	4 cut(s)	25, 691, 783, 786
FspBI	CTAG	4 cut(s)	395, 779, 836, 953
GluI	GCNGC	4 cut(s)	25, 691, 783, 786
GsuI	CTGGAG	1 cut(s)	1037
HaeIII	GGCC	3 cut(s)	371, 458, 484
HapII	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1040
Hin1II	CATG	8 cut(s)	158, 337, 346, 463, 772, 910, 973, 1162
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HinfI	GANTC	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	1066
HpaII	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1040
HphI	GGTGA	2 cut(s)	283, 569
Hpy166II	GTNNAC	5 cut(s)	309, 950, 1001, 1066, 1083
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	4 cut(s)	32, 382, 403, 751
Hpy8I	GTNNAC	5 cut(s)	309, 950, 1001, 1066, 1083
HpyAV	CCTTC	3 cut(s)	199, 925, 1004
HpyCH4III	ACNGT	2 cut(s)	439, 448
HpyCH4IV	ACGT	2 cut(s)	311, 320
HpyCH4V	TGCA	4 cut(s)	631, 866, 872, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	311, 320
Hsp92II	CATG	8 cut(s)	158, 337, 346, 463, 772, 910, 973, 1162
Kpn2I	TCCGGA	1 cut(s)	381
Ksp22I	TGATCA	2 cut(s)	891, 966
KspAI	GTTAAC	1 cut(s)	1066
Kzo9I	GATC	5 cut(s)	60, 578, 891, 966, 1035
LmnI	GCTCC	3 cut(s)	956, 1103, 1150
Lsp1109I	GCAGC	3 cut(s)	36, 769, 772
MaeI	CTAG	4 cut(s)	395, 779, 836, 953
MaeII	ACGT	2 cut(s)	311, 320
MaeIII	GTNAC	4 cut(s)	128, 557, 718, 802
MalI	GATC	5 cut(s)	62, 580, 893, 968, 1037
MboI	GATC	5 cut(s)	60, 578, 891, 966, 1035
MboII	GAAGA	6 cut(s)	217, 251, 658, 695, 856, 1033
MflI	RGATCY	2 cut(s)	578, 1035
MhlI	GDGCHC	3 cut(s)	41, 1108, 1155
MluCI	AATT	3 cut(s)	71, 756, 798
MluI	ACGCGT	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	341, 1081
MnlI	CCTC	9 cut(s)	113, 195, 263, 754, 785, 845, 1021, 1024, 1132
MroI	TCCGGA	1 cut(s)	381
MseI	TTAA	2 cut(s)	1065, 1089
MslI	CAYNNNNRTG	2 cut(s)	464, 680
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1040
MspR9I	CCNGG	5 cut(s)	298, 368, 610, 923, 1040
MvaI	CCWGG	3 cut(s)	368, 610, 923
MvnI	CGCG	2 cut(s)	641, 1071
MwoI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
NciI	CCSGG	2 cut(s)	298, 1040
NdeII	GATC	5 cut(s)	60, 578, 891, 966, 1035
NlaIII	CATG	8 cut(s)	158, 337, 346, 463, 772, 910, 973, 1162
NlaIV	GGNNCC	7 cut(s)	436, 457, 483, 580, 913, 958, 1152
NmuCI	GTSAC	3 cut(s)	128, 557, 802
NspI	RCATGY	2 cut(s)	158, 346
PcsI	WCGNNNNNNNCGW	2 cut(s)	317, 744
PfoI	TCCNGGA	1 cut(s)	1038
PkrI	GCNGC	4 cut(s)	26, 692, 784, 787
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	854
PshAI	GACNNNNGTC	1 cut(s)	362
Psp124BI	GAGCTC	2 cut(s)	41, 1108
Psp1406I	AACGTT	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	3 cut(s)	366, 608, 921
PspGI	CCWGG	3 cut(s)	366, 608, 921
PspN4I	GGNNCC	7 cut(s)	436, 457, 483, 580, 913, 958, 1152
PspPI	GGNCC	4 cut(s)	266, 456, 482, 854
PspPPI	RGGWCCY	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	578, 1035
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	3 cut(s)	476, 828, 951
RsaNI	GTAC	3 cut(s)	475, 827, 950
RseI	CAYNNNNRTG	2 cut(s)	464, 680
Rsr2I	CGGWCCG	1 cut(s)	266
RsrII	CGGWCCG	1 cut(s)	266
SacI	GAGCTC	2 cut(s)	41, 1108
SaqAI	TTAA	2 cut(s)	1065, 1089
SatI	GCNGC	4 cut(s)	25, 691, 783, 786
Sau3AI	GATC	5 cut(s)	60, 578, 891, 966, 1035
Sau96I	GGNCC	4 cut(s)	266, 456, 482, 854
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	5 cut(s)	298, 368, 610, 923, 1040
SduI	GDGCHC	3 cut(s)	41, 1108, 1155
SinI	GGWCC	2 cut(s)	266, 854
SmiMI	CAYNNNNRTG	2 cut(s)	464, 680
SmlI	CTYRAG	2 cut(s)	32, 1059
SmoI	CTYRAG	2 cut(s)	32, 1059
Sse9I	AATT	3 cut(s)	71, 756, 798
SsiI	CCGC	3 cut(s)	452, 690, 1069
SspI	AATATT	2 cut(s)	246, 936
SspMI	CTAG	4 cut(s)	395, 779, 836, 953
SstI	GAGCTC	2 cut(s)	41, 1108
StyD4I	CCNGG	5 cut(s)	296, 366, 608, 921, 1038
TaaI	ACNGT	2 cut(s)	439, 448
TaiI	ACGT	2 cut(s)	314, 323
TaqI	TCGA	2 cut(s)	151, 1076
TaqII	GACCGA	2 cut(s)	245, 254
TasI	AATT	3 cut(s)	71, 756, 798
TatI	WGTACW	3 cut(s)	474, 826, 949
TauI	GCSGC	1 cut(s)	693
Tru1I	TTAA	2 cut(s)	1065, 1089
Tru9I	TTAA	2 cut(s)	1065, 1089
TscAI	CASTG	2 cut(s)	553, 572
TseFI	GTSAC	3 cut(s)	128, 557, 802
TseI	GCWGC	3 cut(s)	24, 782, 785
Tsp45I	GTSAC	3 cut(s)	128, 557, 802
TspDTI	ATGAA	8 cut(s)	104, 226, 506, 785, 807, 857, 907, 1175
TspGWI	ACGGA	4 cut(s)	736, 1107, 1114, 1163
TspRI	CASTG	2 cut(s)	553, 572
VpaK11BI	GGWCC	2 cut(s)	266, 854
XagI	CCTNNNNNAGG	1 cut(s)	475
XceI	RCATGY	2 cut(s)	158, 346
XspI	CTAG	4 cut(s)	395, 779, 836, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.