Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Forward (+)

10841531 .. 10843612

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGAAGCCAACTTGCTTCAGCAACTTCCTTGAGAATTCAAAACCCTACTTTGCAATGATCTCGTTGCAATTCGGCTACGCTGGAATGAACATCATCACCAAAGTTTCTCTGAACCGAGGAATGAGCCACTATGTTCTCGTGGTTTACCGCCACGCCTTTGCCACCGCCGTTATAGCCCCCTTTGCATTCTTTTTTGAGAGGAAAGCACAACCAAAGATAACATTCCCAGTTTTCATGCAAATATTCATCCTCGCTCTTCTTGGGCCGGTGATCGACCAAAACTTTTACTATGCGGGGTTGAAGTTTACGTCTCCAACATTCTCTTGTGCCATGAGCAACATGCTCCCAGCCATGACGTTTGTCATGGCTGTCATATGCCGGATGGAAAAGCTAGACATGAAGACGGTGAGATGCCAAGCAAAGGTCGCAGGAACCGTAGTGACAGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGACCCATTGTTGAGATGTTGTGGTCTAAATACATTCATCCCAAATCATCCTATGTCACCGATACCACTGGAACGGGCGACAAACACTGGTTCTTAGGCTCCGTACTCCTCACCATCGCCACTCTTGCCTGGGCTTCTTTGTTTGTATTGCAAAACAAAGCTTTGAAGACGTACAAGGATCATCAGCTGTCTCTGACAGCGCTAGTGTGTTTCATTGGAACTCTCCAGGCCATTGCTGTCACCTTTGTGATGGAGCACAAACCCTCTGTCTGGAAAATCGGGTTTGACATGAACCTCCTTGCTGCTGCCTATGCTGGGATTGTGACATCAAGCATTTCATACTATGTACAAGGGATAGTGATGAAGAAAAGAGGTCCCGTATTTGCAACTGCTTTTAGCCCTTTGATGATGATCATAGTGGCTGTCATGGGCTCCTTCATCTTGGCCGAAAAAATATTTCTTGGAAGTGTACTGGGATCGGTGTTAATTGTGGCCGGCCTATACTCAGTCCTTTGGGGAAAGCACAAAGAAGTACTGGAGAACAAAGACGATGAGATACCGGAGGCAATAAAGGGATCTCATGTAAACGGCATGTCGGTGGTGTCAGCCATGGATGGAGACATTGAAGCTAATGAAGTGAAGAAAGCAGGACCTAACAAGCTCTCCTCAGTCGCTATTTGTATGCCCATCTCAGAACTTCCCATGAAAGCCAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

399

Amino Acids

43.82

Weight (kDa)

9.23

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 157	6.4e-12	EamA-like transporter family
EamA	PF00892	193 - 331	1e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	151, 168, 296
AclWI	GGATC	3 cut(s)	666, 964, 1063
AcoI	YGGCCR	2 cut(s)	924, 972
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	6 cut(s)	476, 585, 653, 828, 951, 1014
AfeI	AGCGCT	1 cut(s)	681
AfiI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
AgsI	TTSAA	4 cut(s)	42, 304, 646, 1106
AjnI	CCWGG	2 cut(s)	608, 705
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	5 cut(s)	394, 641, 667, 1109, 1141
AluI	AGCT	5 cut(s)	394, 641, 667, 1109, 1141
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	3 cut(s)	318, 675, 1092
AlwI	GGATC	3 cut(s)	666, 964, 1063
AlwNI	CAGNNNCTG	1 cut(s)	452
Aor51HI	AGCGCT	1 cut(s)	681
AoxI	GGCC	6 cut(s)	266, 456, 708, 924, 972, 976
ApeKI	GCWGC	2 cut(s)	782, 785
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	732, 764
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	5 cut(s)	266, 456, 482, 854, 1130
AsuHPI	GGTGA	6 cut(s)	91, 283, 421, 529, 583, 712
AvaII	GGWCC	3 cut(s)	482, 854, 1130
BanII	GRGCYC	1 cut(s)	914
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	410, 653
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	2 cut(s)	769, 772
BccI	CCATC	5 cut(s)	379, 602, 724, 1088, 1175
BceAI	ACGGC	2 cut(s)	155, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	2 cut(s)	610, 707
BclI	TGATCA	1 cut(s)	891
BcoDI	GTCTC	3 cut(s)	318, 675, 1092
BfaI	CTAG	2 cut(s)	395, 683
BfoI	RGCGCY	1 cut(s)	683
BisI	GCNGC	2 cut(s)	783, 786
BlsI	GCNGC	2 cut(s)	784, 787
BmcAI	AGTACT	1 cut(s)	1014
Bme1390I	CCNGG	2 cut(s)	610, 707
Bme18I	GGWCC	3 cut(s)	482, 854, 1130
BmgT120I	GGNCC	5 cut(s)	266, 456, 482, 854, 1130
BmiI	GGNNCC	6 cut(s)	436, 457, 484, 580, 856, 913
BmrFI	CCNGG	2 cut(s)	610, 707
BmrI	ACTGGG	2 cut(s)	224, 962
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	2 cut(s)	224, 962
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	410, 653
BpmI	CTGGAG	2 cut(s)	689, 1037
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	118, 609, 1089
BsaWI	WCCGGW	1 cut(s)	1039
BsaXI	ACNNNNNCTCC	2 cut(s)	1127, 1157
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 750, 795
Bse118I	RCCGGY	2 cut(s)	268, 974
Bse1I	ACTGG	5 cut(s)	230, 553, 572, 957, 1020
Bse3DI	GCAATG	2 cut(s)	63, 711
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	610, 707
BseDI	CCNNGG	3 cut(s)	118, 609, 1089
BseGI	GGATG	5 cut(s)	249, 390, 517, 527, 1099
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
BseMI	GCAATG	2 cut(s)	63, 711
BseMII	CTCAG	3 cut(s)	999, 1161, 1185
BseNI	ACTGG	5 cut(s)	230, 553, 572, 957, 1020
BseRI	GAGGAG	2 cut(s)	578, 1135
BseXI	GCAGC	2 cut(s)	769, 772
BseYI	CCCAGC	3 cut(s)	349, 452, 794
BshFI	GGCC	6 cut(s)	268, 458, 710, 926, 974, 978
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	4 cut(s)	269, 382, 975, 1040
BslFI	GGGAC	1 cut(s)	840
BslI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
BsmAI	GTCTC	3 cut(s)	318, 675, 1092
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	840
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	6 cut(s)	268, 458, 710, 926, 974, 978
Bsp1286I	GDGCHC	2 cut(s)	738, 914
Bsp1407I	TGTACA	2 cut(s)	474, 826
Bsp143I	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
Bsp19I	CCATGG	1 cut(s)	1089
BspACI	CCGC	3 cut(s)	151, 168, 296
BspANI	GGCC	6 cut(s)	268, 458, 710, 926, 974, 978
BspCNI	CTCAG	3 cut(s)	998, 1160, 1184
BspLI	GGNNCC	6 cut(s)	436, 457, 484, 580, 856, 913
BspPI	GGATC	3 cut(s)	666, 964, 1063
BspQI	GCTCTTC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	63, 711
BsrFI	RCCGGY	2 cut(s)	268, 974
BsrGI	TGTACA	2 cut(s)	474, 826
BsrI	ACTGG	5 cut(s)	230, 553, 572, 957, 1020
BssAI	RCCGGY	2 cut(s)	268, 974
BssECI	CCNNGG	3 cut(s)	118, 609, 1089
BssMI	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	1089
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	610, 707
Bst4CI	ACNGT	3 cut(s)	409, 439, 448
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	2 cut(s)	474, 826
BstC8I	GCNNGC	2 cut(s)	976, 1192
BstDEI	CTNAG	4 cut(s)	574, 985, 1147, 1171
BstDSI	CCRYGG	1 cut(s)	1089
BstF5I	GGATG	5 cut(s)	249, 390, 517, 527, 1099
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	6 cut(s)	63, 276, 661, 894, 959, 1058
BstMAI	GTCTC	3 cut(s)	318, 675, 1092
BstMBI	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
BstNI	CCWGG	2 cut(s)	610, 707
BstNSI	RCATGY	2 cut(s)	346, 1075
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	608, 705
BstV1I	GCAGC	2 cut(s)	769, 772
BstV2I	GAAGAC	2 cut(s)	410, 653
BstX2I	RGATCY	1 cut(s)	1055
BstYI	RGATCY	1 cut(s)	1055
BsuRI	GGCC	6 cut(s)	268, 458, 710, 926, 974, 978
BtgI	CCRYGG	1 cut(s)	1089
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	5 cut(s)	249, 390, 517, 527, 1099
BtsIMutI	CAGTG	3 cut(s)	453, 546, 565
Cac8I	GCNNGC	2 cut(s)	976, 1192
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	682
Cfr10I	RCCGGY	2 cut(s)	268, 974
Cfr13I	GGNCC	5 cut(s)	266, 456, 482, 854, 1130
Csp6I	GTAC	6 cut(s)	475, 584, 652, 827, 950, 1013
CviQI	GTAC	6 cut(s)	475, 584, 652, 827, 950, 1013
DdeI	CTNAG	4 cut(s)	574, 985, 1147, 1171
DpnI	GATC	6 cut(s)	62, 275, 660, 893, 958, 1057
DpnII	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
EaeI	YGGCCR	2 cut(s)	924, 972
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	1089
Eco24I	GRGCYC	1 cut(s)	914
Eco47I	GGWCC	3 cut(s)	482, 854, 1130
Eco47III	AGCGCT	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	4
EcoO109I	RGGNCCY	3 cut(s)	482, 854, 1130
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	608, 705
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT38I	GRGCYC	1 cut(s)	914
ErhI	CCWWGG	1 cut(s)	1089
Esp3I	CGTCTC	1 cut(s)	318
FaqI	GGGAC	1 cut(s)	840
FauI	CCCGC	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	2 cut(s)	783, 786
FokI	GGATG	5 cut(s)	236, 397, 504, 514, 1106
FriOI	GRGCYC	1 cut(s)	914
FseI	GGCCGGCC	1 cut(s)	978
Fsp4HI	GCNGC	2 cut(s)	783, 786
FspBI	CTAG	2 cut(s)	395, 683
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	2 cut(s)	783, 786
GsaI	CCCAGC	3 cut(s)	353, 456, 798
GsuI	CTGGAG	2 cut(s)	689, 1037
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	6 cut(s)	268, 458, 710, 926, 974, 978
HapII	CCGG	4 cut(s)	269, 382, 975, 1040
HhaI	GCGC	1 cut(s)	682
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	639
HpaII	CCGG	4 cut(s)	269, 382, 975, 1040
HphI	GGTGA	6 cut(s)	91, 283, 421, 529, 583, 712
Hpy166II	GTNNAC	4 cut(s)	148, 309, 950, 1066
Hpy188I	TCNGA	3 cut(s)	114, 675, 1174
Hpy188III	TCNNGA	1 cut(s)	751
Hpy8I	GTNNAC	4 cut(s)	148, 309, 950, 1066
HpyAV	CCTTC	1 cut(s)	925
HpyCH4III	ACNGT	3 cut(s)	409, 439, 448
HpyCH4IV	ACGT	3 cut(s)	311, 359, 650
HpyCH4V	TGCA	6 cut(s)	56, 70, 188, 241, 631, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
HpyF3I	CTNAG	4 cut(s)	574, 985, 1147, 1171
HpySE526I	ACGT	3 cut(s)	311, 359, 650
HspAI	GCGC	1 cut(s)	680
KroI	GCCGGC	1 cut(s)	974
KroNI	GCCGGC	1 cut(s)	976
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	351, 584, 733, 917
Lsp1109I	GCAGC	2 cut(s)	769, 772
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	395, 683
MaeII	ACGT	3 cut(s)	311, 359, 650
MaeIII	GTNAC	4 cut(s)	442, 535, 718, 802
MalI	GATC	6 cut(s)	62, 275, 660, 893, 958, 1057
MboI	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
MboII	GAAGA	5 cut(s)	251, 415, 658, 856, 1132
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	2 cut(s)	738, 914
MluCI	AATT	4 cut(s)	37, 71, 966, 1195
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	9 cut(s)	113, 195, 263, 599, 754, 785, 845, 1036, 1156
MroNI	GCCGGC	1 cut(s)	974
MseI	TTAA	2 cut(s)	965, 1198
MslI	CAYNNNNRTG	3 cut(s)	464, 725, 1076
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	4 cut(s)	269, 382, 975, 1040
MspR9I	CCNGG	2 cut(s)	610, 707
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	2 cut(s)	610, 707
MwoI	GCNNNNNNNGC	5 cut(s)	176, 185, 428, 605, 791
NaeI	GCCGGC	1 cut(s)	976
NcoI	CCATGG	1 cut(s)	1089
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
NgoMIV	GCCGGC	1 cut(s)	974
NlaIV	GGNNCC	6 cut(s)	436, 457, 484, 580, 856, 913
NmuCI	GTSAC	4 cut(s)	442, 535, 718, 802
NspI	RCATGY	2 cut(s)	346, 1075
OliI	CACNNNNGTG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	976
PkrI	GCNGC	2 cut(s)	784, 787
PpuMI	RGGWCCY	3 cut(s)	482, 854, 1130
PshAI	GACNNNNGTC	1 cut(s)	362
Psp5II	RGGWCCY	3 cut(s)	482, 854, 1130
Psp6I	CCWGG	2 cut(s)	608, 705
PspFI	CCCAGC	3 cut(s)	349, 452, 794
PspGI	CCWGG	2 cut(s)	608, 705
PspN4I	GGNNCC	6 cut(s)	436, 457, 484, 580, 856, 913
PspPI	GGNCC	5 cut(s)	266, 456, 482, 854, 1130
PspPPI	RGGWCCY	3 cut(s)	482, 854, 1130
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	1055
PvuII	CAGCTG	1 cut(s)	667
RigI	GGCCGGCC	1 cut(s)	978
RsaI	GTAC	6 cut(s)	476, 585, 653, 828, 951, 1014
RsaNI	GTAC	6 cut(s)	475, 584, 652, 827, 950, 1013
RseI	CAYNNNNRTG	3 cut(s)	464, 725, 1076
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	965, 1198
SatI	GCNGC	2 cut(s)	783, 786
Sau3AI	GATC	6 cut(s)	60, 273, 658, 891, 956, 1055
Sau96I	GGNCC	5 cut(s)	266, 456, 482, 854, 1130
ScaI	AGTACT	1 cut(s)	1014
ScrFI	CCNGG	2 cut(s)	610, 707
SduI	GDGCHC	2 cut(s)	738, 914
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	3 cut(s)	482, 854, 1130
SmiMI	CAYNNNNRTG	3 cut(s)	464, 725, 1076
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	37, 71, 966, 1195
SsiI	CCGC	3 cut(s)	151, 168, 296
SspI	AATATT	2 cut(s)	246, 936
SspMI	CTAG	2 cut(s)	395, 683
StyD4I	CCNGG	2 cut(s)	608, 705
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	3 cut(s)	409, 439, 448
TaiI	ACGT	3 cut(s)	314, 362, 653
TaqI	TCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	37, 71, 966, 1195
TatI	WGTACW	4 cut(s)	474, 826, 949, 1012
Tru1I	TTAA	2 cut(s)	965, 1198
Tru9I	TTAA	2 cut(s)	965, 1198
TscAI	CASTG	3 cut(s)	453, 553, 572
TseFI	GTSAC	4 cut(s)	442, 535, 718, 802
TseI	GCWGC	2 cut(s)	782, 785
Tsp45I	GTSAC	4 cut(s)	442, 535, 718, 802
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	3 cut(s)	453, 553, 572
VpaK11BI	GGWCC	3 cut(s)	482, 854, 1130
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	2 cut(s)	346, 1075
XspI	CTAG	2 cut(s)	395, 683
ZrmI	AGTACT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.