Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Reverse (-)

2521515 .. 2523377

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGAAGGCTGGTTGCTTCGGCAGCTTCCTTGAGAGCTCGAAACCCTACTTTGCAATGATCTCCCTACAATTTGGCTACGCCGGAATGAACATCATCACCAAAGTTTCTCTCAACAGAGGAATGAGTCACTATGTGCTTGTGGTTTATCGCCATGCCATTGCTACTGCTATTATAGCCCCATTTGCCTTCTTTTTTGAGAGGAAGAAGCAACCAAAAATGACATTCTCAATGTTCATGCAAATATTTATCCTCGGCCTTCTTGGTCCGGTGATTGACCAGAACTTCTACTATGCCGGGTTGAAGTTTACGTCTCCAACGTTCTCTTGTGCCATGAGCAACATGCTTCCGGCTATGACTTTTGTCCTGGCCGTCATATGCCGGATGGAAGTGCTAGACATCAAGAAAGTAAGGTGCCAAGCAAAGGTAATCGGAACGGTATTGACAGTGGCGGGGGCCATGCTGATGACCTTGTACAGGGGGCCAATTGTAGAGATGTTGTGGTCTAAGTATATTCACCCACGAAAATCATATGTCACAGATACCACTGGGACTGGCGACAAACACTGGTTTTTGGGATCCATTATGCTAACCATTGCTACTCTTGCCTGGGCTTCTTTATTTGTGTTACAAAACAACGCGTTGAAGACCTACAAGAACCATCAGCTGTCTCTCACATCAATGATATGCGGCATAGGAACTCTGCAGGCTATTGCTGTTACCTTTGTGATGGAACGCAAACCCTCTGTCTGGAGAATTGGTTTTGACATGAACCTCTTAGCTGCTGCCTATGCTGGAATTGTCACATCAAGCATTTCGTACTATGTACAAGGGCTAGTGATGAAGATGAGAGGTCCCGTATTTGCAACTGCTTTTAGCCCTTTGATGATGATCATTGTGGCAATCATGGGATCCTTCATCCTTGCAGAAAAAATATTTCTTGGAAGTGTACTAGGAGCAGTATTGATCGTGTTCGGGCTTTATGCAGTCCTGTGGGGAAAACACAAAGAAGTATTGGAGAAGGAGGAGATCCCGGAAGCAATAAAGGGTTCTCAAGTAAACGGCGTGTCGATATTAACCGTTAACGGAGATGTTGGAGCTAATAACAAGCTCTCCTCGGTTGCTATTTCAATGCCTATCACAGAACCCCCCATGAAAACCAACCCAATGCCATGCCTAATCAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

397

Amino Acids

43.61

Weight (kDa)

9.55

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccII	CGCG	1 cut(s)	641
AciI	CCGC	2 cut(s)	452, 690
AclI	AACGTT	1 cut(s)	320
AclWI	GGATC	5 cut(s)	573, 586, 906, 919, 1024
AcoI	YGGCCR	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	4 cut(s)	476, 821, 828, 951
AfiI	CCNNNNNNNGG	3 cut(s)	424, 477, 750
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	304, 646, 1131
AjnI	CCWGG	2 cut(s)	366, 608
AluBI	AGCT	6 cut(s)	27, 39, 667, 782, 1100, 1111
AluI	AGCT	6 cut(s)	27, 39, 667, 782, 1100, 1111
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	318, 675
AlwI	GGATC	5 cut(s)	573, 586, 906, 919, 1024
AoxI	GGCC	4 cut(s)	256, 369, 456, 482
ApeKI	GCWGC	3 cut(s)	24, 782, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	732, 764
AspS9I	GGNCC	4 cut(s)	266, 456, 482, 854
AsuC2I	CCSGG	2 cut(s)	298, 1034
AsuHPI	GGTGA	3 cut(s)	91, 283, 509
AvaII	GGWCC	2 cut(s)	266, 854
BamHI	GGATCC	2 cut(s)	578, 911
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	36, 769, 772
BccI	CCATC	3 cut(s)	379, 669, 724
BceAI	ACGGC	2 cut(s)	356, 1078
BciT130I	CCWGG	2 cut(s)	368, 610
BclI	TGATCA	1 cut(s)	891
BcnI	CCSGG	2 cut(s)	298, 1034
BcoDI	GTCTC	2 cut(s)	318, 675
BfaI	CTAG	3 cut(s)	395, 836, 953
BfmI	CTRYAG	1 cut(s)	704
BisI	GCNGC	4 cut(s)	25, 691, 783, 786
BlsI	GCNGC	4 cut(s)	26, 692, 784, 787
Bme1390I	CCNGG	4 cut(s)	298, 368, 610, 1034
Bme18I	GGWCC	2 cut(s)	266, 854
BmgT120I	GGNCC	4 cut(s)	266, 456, 482, 854
BmiI	GGNNCC	6 cut(s)	416, 457, 483, 580, 856, 913
BmrFI	CCNGG	4 cut(s)	298, 368, 610, 1034
BmrI	ACTGGG	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	558
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	772
BpuEI	CTTGAG	2 cut(s)	53, 1038
BpuMI	CCSGG	2 cut(s)	298, 1034
BsaBI	GATNNNNATC	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	253, 609, 1116
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	4 cut(s)	745, 775, 1097, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 477, 750
Bse1I	ACTGG	3 cut(s)	553, 559, 572
Bse3DI	GCAATG	3 cut(s)	63, 159, 594
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	368, 610
BseDI	CCNNGG	3 cut(s)	253, 609, 1116
BseGI	GGATG	2 cut(s)	390, 918
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	3 cut(s)	424, 477, 750
BseMI	GCAATG	3 cut(s)	63, 159, 594
BseNI	ACTGG	3 cut(s)	553, 559, 572
BseRI	GAGGAG	2 cut(s)	1040, 1105
BseXI	GCAGC	3 cut(s)	36, 769, 772
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	4 cut(s)	258, 371, 458, 484
BshNI	GGYRCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1034
BslFI	GGGAC	2 cut(s)	565, 840
BslI	CCNNNNNNNGG	3 cut(s)	424, 477, 750
BsmAI	GTCTC	2 cut(s)	318, 675
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	2 cut(s)	565, 840
BsnI	GGCC	4 cut(s)	258, 371, 458, 484
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	2 cut(s)	474, 826
Bsp143I	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
BspACI	CCGC	2 cut(s)	452, 690
BspANI	GGCC	4 cut(s)	258, 371, 458, 484
BspFNI	CGCG	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	1187
BspLI	GGNNCC	6 cut(s)	416, 457, 483, 580, 856, 913
BspMAI	CTGCAG	1 cut(s)	708
BspPI	GGATC	5 cut(s)	573, 586, 906, 919, 1024
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	3 cut(s)	63, 159, 594
BsrGI	TGTACA	2 cut(s)	474, 826
BsrI	ACTGG	3 cut(s)	553, 559, 572
BssECI	CCNNGG	3 cut(s)	253, 609, 1116
BssMI	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
Bst2UI	CCWGG	2 cut(s)	368, 610
Bst4CI	ACNGT	3 cut(s)	439, 448, 1081
BstAUI	TGTACA	2 cut(s)	474, 826
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	507, 778
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	390, 918
BstFNI	CGCG	1 cut(s)	641
BstKTI	GATC	6 cut(s)	63, 581, 894, 914, 969, 1032
BstMAI	GTCTC	2 cut(s)	318, 675
BstMBI	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
BstNI	CCWGG	2 cut(s)	368, 610
BstNSI	RCATGY	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	4 cut(s)	296, 366, 608, 1032
BstSFI	CTRYAG	1 cut(s)	704
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	36, 769, 772
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	3 cut(s)	578, 911, 1029
BstYI	RGATCY	3 cut(s)	578, 911, 1029
BsuRI	GGCC	4 cut(s)	258, 371, 458, 484
BtsCI	GGATG	2 cut(s)	390, 918
BtsIMutI	CAGTG	3 cut(s)	453, 546, 565
Cac8I	GCNNGC	1 cut(s)	708
CciI	TCATGA	1 cut(s)	1187
Cfr13I	GGNCC	4 cut(s)	266, 456, 482, 854
Csp6I	GTAC	4 cut(s)	475, 820, 827, 950
CviQI	GTAC	4 cut(s)	475, 820, 827, 950
DdeI	CTNAG	2 cut(s)	507, 778
DpnI	GATC	6 cut(s)	62, 580, 893, 913, 968, 1031
DpnII	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
DraIII	CACNNNGTG	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	266, 854
Eco53kI	GAGCTC	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	366, 608
EcoT38I	GRGCYC	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	318
FaqI	GGGAC	2 cut(s)	565, 840
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	2 cut(s)	377, 532
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	4 cut(s)	25, 691, 783, 786
FokI	GGATG	2 cut(s)	397, 905
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	4 cut(s)	25, 691, 783, 786
FspBI	CTAG	3 cut(s)	395, 836, 953
GluI	GCNGC	4 cut(s)	25, 691, 783, 786
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	4 cut(s)	258, 371, 458, 484
HapII	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1034
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	1084
HpaII	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1034
HphI	GGTGA	3 cut(s)	91, 283, 509
Hpy166II	GTNNAC	4 cut(s)	309, 950, 1060, 1084
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	3 cut(s)	403, 751, 1188
Hpy8I	GTNNAC	4 cut(s)	309, 950, 1060, 1084
HpyAV	CCTTC	4 cut(s)	199, 269, 925, 1015
HpyCH4III	ACNGT	3 cut(s)	439, 448, 1081
HpyCH4IV	ACGT	2 cut(s)	311, 320
HpyCH4V	TGCA	6 cut(s)	56, 241, 706, 866, 926, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
HpyF3I	CTNAG	2 cut(s)	507, 778
HpySE526I	ACGT	2 cut(s)	311, 320
Ksp22I	TGATCA	1 cut(s)	891
KspAI	GTTAAC	1 cut(s)	1084
Kzo9I	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
LmnI	GCTCC	2 cut(s)	956, 1097
Lsp1109I	GCAGC	3 cut(s)	36, 769, 772
MaeI	CTAG	3 cut(s)	395, 836, 953
MaeII	ACGT	2 cut(s)	311, 320
MaeIII	GTNAC	5 cut(s)	128, 535, 627, 718, 802
MalI	GATC	6 cut(s)	62, 580, 893, 913, 968, 1031
MboI	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
MboII	GAAGA	3 cut(s)	217, 658, 856
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	3 cut(s)	578, 911, 1029
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	4 cut(s)	71, 486, 756, 798
MluI	ACGCGT	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	341, 1075
MnlI	CCTC	8 cut(s)	113, 195, 263, 754, 785, 845, 1018, 1126
MseI	TTAA	2 cut(s)	1076, 1083
MslI	CAYNNNNRTG	2 cut(s)	464, 680
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	6 cut(s)	84, 269, 297, 350, 382, 1034
MspR9I	CCNGG	4 cut(s)	298, 368, 610, 1034
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	368, 610
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	5 cut(s)	24, 176, 185, 605, 791
NciI	CCSGG	2 cut(s)	298, 1034
NdeI	CATATG	2 cut(s)	377, 532
NdeII	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
NlaIV	GGNNCC	6 cut(s)	416, 457, 483, 580, 856, 913
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	128, 535, 802
NspI	RCATGY	1 cut(s)	346
PagI	TCATGA	1 cut(s)	1187
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	1032
PkrI	GCNGC	4 cut(s)	26, 692, 784, 787
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	854
PshAI	GACNNNNGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	41
Psp1406I	AACGTT	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	366, 608
PspGI	CCWGG	2 cut(s)	366, 608
PspN4I	GGNNCC	6 cut(s)	416, 457, 483, 580, 856, 913
PspPI	GGNCC	4 cut(s)	266, 456, 482, 854
PspPPI	RGGWCCY	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	708
PsuI	RGATCY	3 cut(s)	578, 911, 1029
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	4 cut(s)	476, 821, 828, 951
RsaNI	GTAC	4 cut(s)	475, 820, 827, 950
RseI	CAYNNNNRTG	2 cut(s)	464, 680
SacI	GAGCTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	1076, 1083
SatI	GCNGC	4 cut(s)	25, 691, 783, 786
Sau3AI	GATC	6 cut(s)	60, 578, 891, 911, 966, 1029
Sau96I	GGNCC	4 cut(s)	266, 456, 482, 854
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	4 cut(s)	298, 368, 610, 1034
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	704
SinI	GGWCC	2 cut(s)	266, 854
SmiMI	CAYNNNNRTG	2 cut(s)	464, 680
SmlI	CTYRAG	2 cut(s)	32, 1053
SmoI	CTYRAG	2 cut(s)	32, 1053
Sse9I	AATT	4 cut(s)	71, 486, 756, 798
SsiI	CCGC	2 cut(s)	452, 690
SspI	AATATT	2 cut(s)	246, 936
SspMI	CTAG	3 cut(s)	395, 836, 953
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	4 cut(s)	296, 366, 608, 1032
TaaI	ACNGT	3 cut(s)	439, 448, 1081
TaiI	ACGT	2 cut(s)	314, 323
TaqI	TCGA	2 cut(s)	41, 1070
TasI	AATT	4 cut(s)	71, 486, 756, 798
TatI	WGTACW	3 cut(s)	474, 826, 949
TauI	GCSGC	1 cut(s)	693
Tru1I	TTAA	2 cut(s)	1076, 1083
Tru9I	TTAA	2 cut(s)	1076, 1083
TscAI	CASTG	3 cut(s)	453, 553, 572
TseFI	GTSAC	3 cut(s)	128, 535, 802
TseI	GCWGC	3 cut(s)	24, 782, 785
Tsp45I	GTSAC	3 cut(s)	128, 535, 802
TspDTI	ATGAA	6 cut(s)	104, 226, 785, 857, 907, 1169
TspGWI	ACGGA	1 cut(s)	1101
TspRI	CASTG	3 cut(s)	453, 553, 572
VpaK11BI	GGWCC	2 cut(s)	266, 854
XagI	CCTNNNNNAGG	1 cut(s)	475
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	3 cut(s)	395, 836, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.