Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Forward (+)

4675626 .. 4678090

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04090.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGAAGCCAACTTGTTTCAGCAACTTCCTTGAGAACTCAAAACCCTACTTTGCAATGATCTCGTTGCAATTCGGCTACGCCGGGATGAATATCATCACCAAAGTTTCTCTGAACCGGGGAATGAGCCACTATGTGCTCGTGGTTTACCGCCACGCCTTTGCCACCGCCGTTATAGCCCCCTTTGCTTTCTTTTTTGAGAGGAAAAAACAACCGAAGATAACATTCCCGGTTTTCATGCAAATATTTATCCTCGCTCTTCTTGGGCCGGTGATCGACCAAAACTTCTACTATGCAGGGTTGAAATTTACGTCTCCAACATTCTCTTGTGCCATGAGCAACATGCTCCCAGCCATGACGTTTGTCATGGCTGTCATATGCCGAATGGAAAAGCTAGACATGAAGACAGTGAGATGCCAAGCAAAGGTGGCAGGAACCGTAGTGACAGTGGCCGGGGCCATGTTGATGACCTTGTACAAAGGCCCCATCGTTCAGATGTTGTGGTCTAAATACATTCATCCCAAATCATCCTATGTCACCGATACCACCGGCACCGGCGACAAACGCTGGTTCTTAGGCTCCGTACTCCTCACCATCGCCACTCTTGCCTGGGCTTCTTTGTTTGTATTGCAAAACAAGGCTTTGAAGACGTACAAGGATCATCAGCTGTCTCTGACATCGCTAGTGTGTTTCATCGGAACTCTCCAAGCCATTGCGGTCACCTTTGTGATGGAGCACAAACCCTCTGTCTGGAAAATCGGGTTCGACATGAACCTCCTTGCTGCTGCCTATGCTGGGATTGTGACATCAAGTATTTCATACTATGTACAAGGACTAGTGATGAAGAAGAGAGGTCCGGTGTTTGCAACTGCTTTTAGCCCTTTGATGATGATCATTGTTGCTATCATGGGATCCTTCATCTTGGCAGAAAAAATATTTCTTGGAAGTGTTCTGGGAGCGGTGTTGATTGTGGCCGGCCTATACTCAGTCCTGTGGGGAAAGCACAAAGAAGGATTGGAGAACAGAGACGATGAGATACCGGAGGCAATAAAGGGATGTCATGTAAATGGCACGGCGGTGGTGTCAGTCATGGATGGAAACGACGTTGAAGCTAATCAAGTGAAGAATGCAGAAGCTAACAAGCTCTCCTCAGTGGCTATTTGTATGCCCATATCAGAACTTCCCGTAGTGAAACCTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

402

Amino Acids

44.1

Weight (kDa)

9.37

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 157	9.7e-13	EamA-like transporter family
EamA	PF00892	193 - 312	4.5e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	959
AciI	CCGC	5 cut(s)	151, 168, 716, 959, 1076
AclWI	GGATC	3 cut(s)	666, 906, 919
AcoI	YGGCCR	2 cut(s)	450, 972
AcsI	RAATTY	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	4 cut(s)	476, 585, 653, 828
AfiI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
AgsI	TTSAA	3 cut(s)	304, 646, 1109
AhlI	ACTAGT	1 cut(s)	835
AjnI	CCWGG	2 cut(s)	608, 1195
AleI	CACNNNNGTG	2 cut(s)	725, 1076
AluBI	AGCT	5 cut(s)	394, 667, 1112, 1136, 1144
AluI	AGCT	5 cut(s)	394, 667, 1112, 1136, 1144
Alw21I	GWGCWC	2 cut(s)	141, 738
Alw26I	GTCTC	3 cut(s)	318, 675, 1020
AlwI	GGATC	3 cut(s)	666, 906, 919
AoxI	GGCC	6 cut(s)	266, 450, 456, 481, 972, 976
ApeKI	GCWGC	2 cut(s)	782, 785
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	732, 764
AspS9I	GGNCC	4 cut(s)	266, 456, 482, 854
AsuC2I	CCSGG	4 cut(s)	85, 119, 230, 454
AsuHPI	GGTGA	5 cut(s)	91, 283, 529, 583, 712
AvaII	GGWCC	1 cut(s)	854
BamHI	GGATCC	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	410, 653
Bbv12I	GWGCWC	2 cut(s)	141, 738
BbvI	GCAGC	2 cut(s)	769, 772
BccI	CCATC	4 cut(s)	494, 602, 724, 1088
BceAI	ACGGC	2 cut(s)	155, 1089
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	2 cut(s)	610, 1197
BclI	TGATCA	1 cut(s)	891
BcnI	CCSGG	4 cut(s)	85, 119, 230, 454
BcoDI	GTCTC	3 cut(s)	318, 675, 1020
BcuI	ACTAGT	1 cut(s)	835
BfaI	CTAG	3 cut(s)	395, 683, 836
BisI	GCNGC	2 cut(s)	783, 786
BlsI	GCNGC	2 cut(s)	784, 787
Bme1390I	CCNGG	6 cut(s)	85, 119, 230, 454, 610, 1197
Bme18I	GGWCC	1 cut(s)	854
BmgT120I	GGNCC	4 cut(s)	266, 456, 482, 854
BmiI	GGNNCC	6 cut(s)	436, 457, 484, 553, 580, 913
BmrFI	CCNGG	6 cut(s)	85, 119, 230, 454, 610, 1197
BmsI	GCATC	1 cut(s)	404
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	410, 653
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	4 cut(s)	85, 119, 230, 454
BsaBI	GATNNNNATC	2 cut(s)	92, 890
BsaJI	CCNNGG	4 cut(s)	118, 453, 609, 1196
BsaWI	WCCGGW	2 cut(s)	856, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	1130, 1160
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 750, 795
Bse118I	RCCGGY	4 cut(s)	268, 548, 554, 974
Bse3DI	GCAATG	2 cut(s)	63, 711
Bse8I	GATNNNNATC	2 cut(s)	92, 890
BseBI	CCWGG	2 cut(s)	610, 1197
BseDI	CCNNGG	4 cut(s)	118, 453, 609, 1196
BseGI	GGATG	5 cut(s)	93, 517, 527, 1061, 1099
BseJI	GATNNNNATC	2 cut(s)	92, 890
BseLI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
BseMI	GCAATG	2 cut(s)	63, 711
BseMII	CTCAG	2 cut(s)	999, 1164
BseRI	GAGGAG	2 cut(s)	578, 1138
BseXI	GCAGC	2 cut(s)	769, 772
BseYI	CCCAGC	2 cut(s)	349, 794
BshFI	GGCC	6 cut(s)	268, 452, 458, 483, 974, 978
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	141, 738
BslI	CCNNNNNNNGG	3 cut(s)	424, 750, 795
BsmAI	GTCTC	3 cut(s)	318, 675, 1020
BsmBI	CGTCTC	2 cut(s)	318, 1020
BsmI	GAATGC	1 cut(s)	1132
BsnI	GGCC	6 cut(s)	268, 452, 458, 483, 974, 978
Bsp1286I	GDGCHC	2 cut(s)	141, 738
Bsp1407I	TGTACA	2 cut(s)	474, 826
Bsp143I	GATC	5 cut(s)	60, 273, 658, 891, 911
BspACI	CCGC	5 cut(s)	151, 168, 716, 959, 1076
BspANI	GGCC	6 cut(s)	268, 452, 458, 483, 974, 978
BspCNI	CTCAG	2 cut(s)	998, 1163
BspLI	GGNNCC	6 cut(s)	436, 457, 484, 553, 580, 913
BspPI	GGATC	3 cut(s)	666, 906, 919
BspQI	GCTCTTC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	959
BsrDI	GCAATG	2 cut(s)	63, 711
BsrFI	RCCGGY	4 cut(s)	268, 548, 554, 974
BsrGI	TGTACA	2 cut(s)	474, 826
BssAI	RCCGGY	4 cut(s)	268, 548, 554, 974
BssECI	CCNNGG	4 cut(s)	118, 453, 609, 1196
BssMI	GATC	5 cut(s)	60, 273, 658, 891, 911
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	610, 1197
Bst4CI	ACNGT	3 cut(s)	409, 439, 448
Bst6I	CTCTTC	2 cut(s)	264, 842
BstAUI	TGTACA	2 cut(s)	474, 826
BstC8I	GCNNGC	1 cut(s)	976
BstDEI	CTNAG	3 cut(s)	574, 985, 1150
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	5 cut(s)	93, 517, 527, 1061, 1099
BstKTI	GATC	5 cut(s)	63, 276, 661, 894, 914
BstMAI	GTCTC	3 cut(s)	318, 675, 1020
BstMBI	GATC	5 cut(s)	60, 273, 658, 891, 911
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 185, 428, 564, 605, 791
BstNI	CCWGG	2 cut(s)	610, 1197
BstNSI	RCATGY	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	6 cut(s)	83, 117, 228, 452, 608, 1195
BstV1I	GCAGC	2 cut(s)	769, 772
BstV2I	GAAGAC	2 cut(s)	410, 653
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BsuRI	GGCC	6 cut(s)	268, 452, 458, 483, 974, 978
BtgZI	GCGATG	2 cut(s)	580, 663
BtsCI	GGATG	5 cut(s)	93, 517, 527, 1061, 1099
BtsIMutI	CAGTG	3 cut(s)	414, 453, 1158
Cac8I	GCNNGC	1 cut(s)	976
Cfr10I	RCCGGY	4 cut(s)	268, 548, 554, 974
Cfr13I	GGNCC	4 cut(s)	266, 456, 482, 854
Csp6I	GTAC	4 cut(s)	475, 584, 652, 827
CviQI	GTAC	4 cut(s)	475, 584, 652, 827
DdeI	CTNAG	3 cut(s)	574, 985, 1150
DpnI	GATC	5 cut(s)	62, 275, 660, 893, 913
DpnII	GATC	5 cut(s)	60, 273, 658, 891, 911
DraIII	CACNNNGTG	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	450, 972
Eam1104I	CTCTTC	2 cut(s)	264, 842
EarI	CTCTTC	2 cut(s)	264, 842
Eco47I	GGWCC	1 cut(s)	854
Eco91I	GGTNACC	1 cut(s)	718
EcoO109I	RGGNCCY	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	608, 1195
Esp3I	CGTCTC	2 cut(s)	318, 1020
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	2 cut(s)	783, 786
FokI	GGATG	5 cut(s)	100, 504, 514, 1068, 1106
FseI	GGCCGGCC	1 cut(s)	978
Fsp4HI	GCNGC	2 cut(s)	783, 786
FspBI	CTAG	3 cut(s)	395, 683, 836
GluI	GCNGC	2 cut(s)	783, 786
GsaI	CCCAGC	2 cut(s)	353, 798
HaeIII	GGCC	6 cut(s)	268, 452, 458, 483, 974, 978
HphI	GGTGA	5 cut(s)	91, 283, 529, 583, 712
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	114, 495, 675, 698, 1177
Hpy188III	TCNNGA	1 cut(s)	751
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	1106
HpyAV	CCTTC	2 cut(s)	925, 1004
HpyCH4III	ACNGT	3 cut(s)	409, 439, 448
HpyCH4IV	ACGT	4 cut(s)	311, 359, 650, 1104
HpyCH4V	TGCA	7 cut(s)	56, 70, 241, 296, 631, 866, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 185, 428, 564, 605, 791
HpyF3I	CTNAG	3 cut(s)	574, 985, 1150
HpySE526I	ACGT	4 cut(s)	311, 359, 650, 1104
KroI	GCCGGC	1 cut(s)	974
KroNI	GCCGGC	1 cut(s)	976
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	5 cut(s)	60, 273, 658, 891, 911
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	351, 584, 733, 956
Lsp1109I	GCAGC	2 cut(s)	769, 772
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	3 cut(s)	395, 683, 836
MaeII	ACGT	4 cut(s)	311, 359, 650, 1104
MaeIII	GTNAC	4 cut(s)	442, 535, 718, 802
MalI	GATC	5 cut(s)	62, 275, 660, 893, 913
MbiI	CCGCTC	1 cut(s)	959
MboI	GATC	5 cut(s)	60, 273, 658, 891, 911
MboII	GAAGA	7 cut(s)	229, 251, 415, 658, 856, 859, 1135
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	2 cut(s)	141, 738
MluCI	AATT	2 cut(s)	71, 305
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	8 cut(s)	195, 263, 599, 754, 785, 845, 1036, 1159
MroNI	GCCGGC	1 cut(s)	974
MslI	CAYNNNNRTG	4 cut(s)	464, 725, 1065, 1076
MspA1I	CMGCKG	1 cut(s)	667
MspR9I	CCNGG	6 cut(s)	85, 119, 230, 454, 610, 1197
Mva1269I	GAATGC	1 cut(s)	1132
MvaI	CCWGG	2 cut(s)	610, 1197
MwoI	GCNNNNNNNGC	6 cut(s)	176, 185, 428, 564, 605, 791
NaeI	GCCGGC	1 cut(s)	976
NciI	CCSGG	4 cut(s)	85, 119, 230, 454
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	5 cut(s)	60, 273, 658, 891, 911
NgoMIV	GCCGGC	1 cut(s)	974
NlaIV	GGNNCC	6 cut(s)	436, 457, 484, 553, 580, 913
NmuCI	GTSAC	4 cut(s)	442, 535, 718, 802
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	2 cut(s)	725, 1076
PciSI	GCTCTTC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	1132
PdiI	GCCGGC	1 cut(s)	976
PkrI	GCNGC	2 cut(s)	784, 787
PshAI	GACNNNNGTC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	608, 1195
PspEI	GGTNACC	1 cut(s)	718
PspFI	CCCAGC	2 cut(s)	349, 794
PspGI	CCWGG	2 cut(s)	608, 1195
PspN4I	GGNNCC	6 cut(s)	436, 457, 484, 553, 580, 913
PspPI	GGNCC	4 cut(s)	266, 456, 482, 854
PsuI	RGATCY	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	667
RigI	GGCCGGCC	1 cut(s)	978
RsaI	GTAC	4 cut(s)	476, 585, 653, 828
RsaNI	GTAC	4 cut(s)	475, 584, 652, 827
RseI	CAYNNNNRTG	4 cut(s)	464, 725, 1065, 1076
SapI	GCTCTTC	1 cut(s)	264
SatI	GCNGC	2 cut(s)	783, 786
Sau3AI	GATC	5 cut(s)	60, 273, 658, 891, 911
Sau96I	GGNCC	4 cut(s)	266, 456, 482, 854
ScrFI	CCNGG	6 cut(s)	85, 119, 230, 454, 610, 1197
SduI	GDGCHC	2 cut(s)	141, 738
SfaNI	GCATC	1 cut(s)	404
SgrAI	CRCCGGYG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	854
SmiMI	CAYNNNNRTG	4 cut(s)	464, 725, 1065, 1076
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	835
Sse9I	AATT	2 cut(s)	71, 305
SsiI	CCGC	5 cut(s)	151, 168, 716, 959, 1076
SspI	AATATT	2 cut(s)	246, 936
SspMI	CTAG	3 cut(s)	395, 683, 836
StyD4I	CCNGG	6 cut(s)	83, 117, 228, 452, 608, 1195
TaaI	ACNGT	3 cut(s)	409, 439, 448
TaiI	ACGT	4 cut(s)	314, 362, 653, 1107
TaqI	TCGA	2 cut(s)	276, 765
TasI	AATT	2 cut(s)	71, 305
TatI	WGTACW	2 cut(s)	474, 826
TscAI	CASTG	3 cut(s)	414, 453, 1158
TseFI	GTSAC	4 cut(s)	442, 535, 718, 802
TseI	GCWGC	2 cut(s)	782, 785
Tsp45I	GTSAC	4 cut(s)	442, 535, 718, 802
TspDTI	ATGAA	9 cut(s)	104, 226, 416, 506, 682, 785, 807, 857, 907
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	3 cut(s)	414, 453, 1158
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	3 cut(s)	395, 683, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.