Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006721

Physical Location & Seq

Genomic Coordinates Reverse (-)

52095955 .. 52098179

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATCTCTTTGCAATTCGGCTACGCCGGAATGAACATCATCACCAAAGTTTCTCTGAACCGAGGAATGAGCCACTATGTGCTCGTGGTTTACCGCCACGCCTTTGCCACCGCCGTTATAGCCCCCTTTGCATTCTTTTTTGAGAGGAAAGCACAACCAAAGATAACATTCCCAGTTTTCATGCAAATATTCATCCTCGCTCTTCTTGGGCCGGTGATCGACCAAAACTTTTACTATGCGGGGTTGAAGTTTACGTCTCCAACATTCTCTTGTGCCATGAGCAACATGCTCCCAGCCATGACGTTTGTCATGGCTGTCATATGCCGGATGGAAAAGCTAGACATGAAAACAGTGAGATGCCAAGCCAAGGTCACAGGAACCGTAGTGACAGTGGCTGGGGCCATGTTAATGACCTTGTACAAAGGCCCCATTGTTGAGATGTTGTGGTCTAAATACATTCATCCCAAATCATCCTATGTCACCGATACCACTGGAACCGGCGACAAACACTGGTTCTTAGGCTCCGTACTCCTCACCATCGCCACTCTTGCCTGGGCATCTTTGTTTGTATTGCAAAACAAAGCTTTGAAGACGTACAAGGATCATCAGCTGTCTCTGACATCGCTAGTGTGTTTCATCGGAACTCTCCAGGCCATTGCTGTCACCTTTGTGATGGAGCACAAACCCTCTGTCTGGAAAATCGGGTTCGACATGAACCTCCTTGCTGCTGCTTATGCTGGGATTGTGACATCAAGCATTTCATACTATGTACAAGGGATAGTGATGAAGAAAAGAGGTCCCGTATTTGCAACCGCTTTTAGCCCTTTGATGATGATCATTGTGGCTATCATGGGCTCCTTCATCTTGGCCGAAAAAATATTTCTTGGAAGTGTACTGGGATCGGTGTTAATTGTGGCCGGCCTATACTCAGTCCTTTGGGGAAAACACAAAGAAGGATTGGAGAACAAAGACGATGAGATACCGGAGGCAATAAAGGGATCTCATGTAAACGGCATGTCGGTGGTGTTAACCATGGATGGAGACATTGAAGCTAATGAAGTGAAGAAAGCAGAAGCTAACAAGCTCTCCTCAGTCGCTATTTGTATGCCCATCTCAGAACTTCCCATGAAAGCCGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

380

Amino Acids

41.68

Weight (kDa)

9.23

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	6 - 138	4.7e-11	EamA-like transporter family
EamA	PF00892	174 - 312	1.5e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07050
fragaria_vesca	FvH4_1g29310 FvH4_1g29310 FvH4_7g04090 FvH4_7g04090
malus_domestica	MD02G1275400.v1.1 MD07G1043300.v1.1
prunus_persica	Prupe.2G045500_v2.0.a1 Prupe.2G045500_v2.0.a1
pyrus_communis	pycom02g23550 pycom07g03070
rosa_chinensis	RchiOBHm_Chr1g0327951 RchiOBHm_Chr3g0494821
rosa_laevigata	RLG00000022660 RLG00000029957
rosa_multiflora	Rmu_sc0000198.1_g000011 Rmu_ssc0000467.1_g000050
rosa_roxburghii	Rroxscaffold_4G00322120 Rroxscaffold_6G00390890
rosa_rugosa	Rorug01G0072500 Rorug03G0268300
rosa_samantha	Rh1BG071100 Rh1CG086600 Rh3DG351800
rosa_wichuraiana	Rw1G006880 Rw3G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	94, 111, 239, 813
AclWI	GGATC	3 cut(s)	609, 907, 1006
AcoI	YGGCCR	2 cut(s)	867, 915
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	5 cut(s)	419, 528, 596, 771, 894
AfiI	CCNNNNNNNGG	2 cut(s)	367, 693
AgsI	TTSAA	3 cut(s)	247, 589, 1049
AjnI	CCWGG	2 cut(s)	551, 648
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	6 cut(s)	337, 584, 610, 1052, 1076, 1084
AluI	AGCT	6 cut(s)	337, 584, 610, 1052, 1076, 1084
Alw21I	GWGCWC	2 cut(s)	84, 681
Alw26I	GTCTC	3 cut(s)	261, 618, 1035
AlwI	GGATC	3 cut(s)	609, 907, 1006
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	7 cut(s)	209, 399, 424, 651, 867, 915, 919
ApeKI	GCWGC	2 cut(s)	725, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	675, 707
AspS9I	GGNCC	4 cut(s)	209, 399, 425, 797
AsuHPI	GGTGA	5 cut(s)	34, 226, 472, 526, 655
AvaII	GGWCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	84, 681
BbvI	GCAGC	2 cut(s)	712, 715
BccI	CCATC	5 cut(s)	322, 545, 667, 1031, 1118
BceAI	ACGGC	2 cut(s)	98, 1027
BciT130I	CCWGG	2 cut(s)	553, 650
BclI	TGATCA	1 cut(s)	834
BcoDI	GTCTC	3 cut(s)	261, 618, 1035
BfaI	CTAG	2 cut(s)	338, 626
BisI	GCNGC	2 cut(s)	726, 729
BlsI	GCNGC	2 cut(s)	727, 730
Bme1390I	CCNGG	2 cut(s)	553, 650
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	4 cut(s)	209, 399, 425, 797
BmiI	GGNNCC	7 cut(s)	379, 400, 427, 496, 523, 799, 856
BmrFI	CCNGG	2 cut(s)	553, 650
BmrI	ACTGGG	2 cut(s)	167, 905
BmsI	GCATC	2 cut(s)	347, 566
BmuI	ACTGGG	2 cut(s)	167, 905
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	833
BsaJI	CCNNGG	4 cut(s)	61, 366, 552, 1032
BsaWI	WCCGGW	1 cut(s)	982
BsaXI	ACNNNNNCTCC	2 cut(s)	1070, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 693
Bse118I	RCCGGY	4 cut(s)	211, 497, 917, 1133
Bse1I	ACTGG	4 cut(s)	173, 496, 515, 900
Bse3DI	GCAATG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	2 cut(s)	553, 650
BseDI	CCNNGG	4 cut(s)	61, 366, 552, 1032
BseGI	GGATG	5 cut(s)	192, 333, 460, 470, 1042
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	367, 693
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	3 cut(s)	942, 1104, 1128
BseNI	ACTGG	4 cut(s)	173, 496, 515, 900
BseRI	GAGGAG	2 cut(s)	521, 1078
BseXI	GCAGC	2 cut(s)	712, 715
BseYI	CCCAGC	3 cut(s)	292, 395, 737
BshFI	GGCC	7 cut(s)	211, 401, 426, 653, 869, 917, 921
BsiHKAI	GWGCWC	2 cut(s)	84, 681
BsiSI	CCGG	7 cut(s)	27, 212, 325, 498, 918, 983, 1134
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	2 cut(s)	367, 693
BsmAI	GTCTC	3 cut(s)	261, 618, 1035
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	7 cut(s)	211, 401, 426, 653, 869, 917, 921
Bsp1286I	GDGCHC	3 cut(s)	84, 681, 857
Bsp1407I	TGTACA	2 cut(s)	417, 769
Bsp143I	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
Bsp19I	CCATGG	1 cut(s)	1032
BspACI	CCGC	4 cut(s)	94, 111, 239, 813
BspANI	GGCC	7 cut(s)	211, 401, 426, 653, 869, 917, 921
BspCNI	CTCAG	3 cut(s)	941, 1103, 1127
BspLI	GGNNCC	7 cut(s)	379, 400, 427, 496, 523, 799, 856
BspPI	GGATC	3 cut(s)	609, 907, 1006
BspQI	GCTCTTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	4 cut(s)	211, 497, 917, 1133
BsrGI	TGTACA	2 cut(s)	417, 769
BsrI	ACTGG	4 cut(s)	173, 496, 515, 900
BssAI	RCCGGY	4 cut(s)	211, 497, 917, 1133
BssECI	CCNNGG	4 cut(s)	61, 366, 552, 1032
BssMI	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	2 cut(s)	366, 1032
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	553, 650
Bst4CI	ACNGT	3 cut(s)	352, 382, 391
Bst6I	CTCTTC	1 cut(s)	207
BstAUI	TGTACA	2 cut(s)	417, 769
BstC8I	GCNNGC	2 cut(s)	919, 1135
BstDEI	CTNAG	4 cut(s)	517, 928, 1090, 1114
BstDSI	CCRYGG	1 cut(s)	1032
BstF5I	GGATG	5 cut(s)	192, 333, 460, 470, 1042
BstKTI	GATC	6 cut(s)	6, 219, 604, 837, 902, 1001
BstMAI	GTCTC	3 cut(s)	261, 618, 1035
BstMBI	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 548, 734
BstNI	CCWGG	2 cut(s)	553, 650
BstNSI	RCATGY	2 cut(s)	289, 1018
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	551, 648
BstV1I	GCAGC	2 cut(s)	712, 715
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	998
BstYI	RGATCY	1 cut(s)	998
BsuRI	GGCC	7 cut(s)	211, 401, 426, 653, 869, 917, 921
BtgI	CCRYGG	1 cut(s)	1032
BtgZI	GCGATG	2 cut(s)	523, 606
BtsCI	GGATG	5 cut(s)	192, 333, 460, 470, 1042
BtsIMutI	CAGTG	4 cut(s)	357, 396, 489, 508
Cac8I	GCNNGC	2 cut(s)	919, 1135
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr10I	RCCGGY	4 cut(s)	211, 497, 917, 1133
Cfr13I	GGNCC	4 cut(s)	209, 399, 425, 797
Csp6I	GTAC	5 cut(s)	418, 527, 595, 770, 893
CviQI	GTAC	5 cut(s)	418, 527, 595, 770, 893
DdeI	CTNAG	4 cut(s)	517, 928, 1090, 1114
DpnI	GATC	6 cut(s)	5, 218, 603, 836, 901, 1000
DpnII	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
DraIII	CACNNNGTG	1 cut(s)	79
EaeI	YGGCCR	2 cut(s)	867, 915
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	366, 1032
Eco24I	GRGCYC	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	797
EcoO109I	RGGNCCY	2 cut(s)	425, 797
EcoRII	CCWGG	2 cut(s)	551, 648
EcoT14I	CCWWGG	2 cut(s)	366, 1032
EcoT38I	GRGCYC	1 cut(s)	857
ErhI	CCWWGG	2 cut(s)	366, 1032
Esp3I	CGTCTC	1 cut(s)	261
FaqI	GGGAC	1 cut(s)	783
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	834
Fnu4HI	GCNGC	2 cut(s)	726, 729
FokI	GGATG	5 cut(s)	179, 340, 447, 457, 1049
FriOI	GRGCYC	1 cut(s)	857
FseI	GGCCGGCC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	726, 729
FspBI	CTAG	2 cut(s)	338, 626
GluI	GCNGC	2 cut(s)	726, 729
GsaI	CCCAGC	3 cut(s)	296, 399, 741
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	7 cut(s)	211, 401, 426, 653, 869, 917, 921
HapII	CCGG	7 cut(s)	27, 212, 325, 498, 918, 983, 1134
HincII	GTYRAC	1 cut(s)	1029
HindII	GTYRAC	1 cut(s)	1029
HindIII	AAGCTT	1 cut(s)	582
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	7 cut(s)	27, 212, 325, 498, 918, 983, 1134
HphI	GGTGA	5 cut(s)	34, 226, 472, 526, 655
Hpy166II	GTNNAC	5 cut(s)	91, 252, 893, 1009, 1029
Hpy188I	TCNGA	4 cut(s)	57, 618, 641, 1117
Hpy188III	TCNNGA	1 cut(s)	694
Hpy8I	GTNNAC	5 cut(s)	91, 252, 893, 1009, 1029
HpyAV	CCTTC	2 cut(s)	868, 947
HpyCH4III	ACNGT	3 cut(s)	352, 382, 391
HpyCH4IV	ACGT	3 cut(s)	254, 302, 593
HpyCH4V	TGCA	5 cut(s)	13, 131, 184, 574, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 548, 734
HpyF3I	CTNAG	4 cut(s)	517, 928, 1090, 1114
HpySE526I	ACGT	3 cut(s)	254, 302, 593
KroI	GCCGGC	2 cut(s)	917, 1133
KroNI	GCCGGC	2 cut(s)	919, 1135
Ksp22I	TGATCA	1 cut(s)	834
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	294, 527, 676, 860
Lsp1109I	GCAGC	2 cut(s)	712, 715
LweI	GCATC	2 cut(s)	347, 566
MaeI	CTAG	2 cut(s)	338, 626
MaeII	ACGT	3 cut(s)	254, 302, 593
MaeIII	GTNAC	5 cut(s)	370, 385, 478, 661, 745
MalI	GATC	6 cut(s)	5, 218, 603, 836, 901, 1000
MboI	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
MboII	GAAGA	4 cut(s)	194, 601, 799, 1075
MflI	RGATCY	1 cut(s)	998
MhlI	GDGCHC	3 cut(s)	84, 681, 857
MluCI	AATT	3 cut(s)	14, 909, 1138
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	9 cut(s)	56, 138, 206, 542, 697, 728, 788, 979, 1099
MroNI	GCCGGC	2 cut(s)	917, 1133
MseI	TTAA	4 cut(s)	407, 908, 1028, 1141
MslI	CAYNNNNRTG	3 cut(s)	407, 668, 1019
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	7 cut(s)	27, 212, 325, 498, 918, 983, 1134
MspR9I	CCNGG	2 cut(s)	553, 650
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	553, 650
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 548, 734
NaeI	GCCGGC	2 cut(s)	919, 1135
NcoI	CCATGG	1 cut(s)	1032
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
NgoMIV	GCCGGC	2 cut(s)	917, 1133
NlaIV	GGNNCC	7 cut(s)	379, 400, 427, 496, 523, 799, 856
NmuCI	GTSAC	5 cut(s)	370, 385, 478, 661, 745
NspI	RCATGY	2 cut(s)	289, 1018
OliI	CACNNNNGTG	1 cut(s)	668
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	131
PdiI	GCCGGC	2 cut(s)	919, 1135
PkrI	GCNGC	2 cut(s)	727, 730
PpuMI	RGGWCCY	1 cut(s)	797
PshAI	GACNNNNGTC	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	2 cut(s)	551, 648
PspFI	CCCAGC	3 cut(s)	292, 395, 737
PspGI	CCWGG	2 cut(s)	551, 648
PspN4I	GGNNCC	7 cut(s)	379, 400, 427, 496, 523, 799, 856
PspPI	GGNCC	4 cut(s)	209, 399, 425, 797
PspPPI	RGGWCCY	1 cut(s)	797
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	998
PvuII	CAGCTG	1 cut(s)	610
RigI	GGCCGGCC	1 cut(s)	921
RsaI	GTAC	5 cut(s)	419, 528, 596, 771, 894
RsaNI	GTAC	5 cut(s)	418, 527, 595, 770, 893
RseI	CAYNNNNRTG	3 cut(s)	407, 668, 1019
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	407, 908, 1028, 1141
SatI	GCNGC	2 cut(s)	726, 729
Sau3AI	GATC	6 cut(s)	3, 216, 601, 834, 899, 998
Sau96I	GGNCC	4 cut(s)	209, 399, 425, 797
ScrFI	CCNGG	2 cut(s)	553, 650
SduI	GDGCHC	3 cut(s)	84, 681, 857
SfaNI	GCATC	2 cut(s)	347, 566
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	3 cut(s)	407, 668, 1019
Sse9I	AATT	3 cut(s)	14, 909, 1138
SsiI	CCGC	4 cut(s)	94, 111, 239, 813
SspI	AATATT	2 cut(s)	189, 879
SspMI	CTAG	2 cut(s)	338, 626
StyD4I	CCNGG	2 cut(s)	551, 648
StyI	CCWWGG	2 cut(s)	366, 1032
TaaI	ACNGT	3 cut(s)	352, 382, 391
TaiI	ACGT	3 cut(s)	257, 305, 596
TaqI	TCGA	2 cut(s)	219, 708
TasI	AATT	3 cut(s)	14, 909, 1138
TatI	WGTACW	3 cut(s)	417, 769, 892
Tru1I	TTAA	4 cut(s)	407, 908, 1028, 1141
Tru9I	TTAA	4 cut(s)	407, 908, 1028, 1141
TscAI	CASTG	4 cut(s)	357, 396, 496, 515
TseFI	GTSAC	5 cut(s)	370, 385, 478, 661, 745
TseI	GCWGC	2 cut(s)	725, 728
Tsp45I	GTSAC	5 cut(s)	370, 385, 478, 661, 745
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	4 cut(s)	357, 396, 496, 515
VpaK11BI	GGWCC	1 cut(s)	797
XceI	RCATGY	2 cut(s)	289, 1018
XspI	CTAG	2 cut(s)	338, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.